RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 GALR2O43603 387 aaPredicted RBP7.49□□□□□ -1.21
USP40-203ENST00000427112 LILRA1O75019 489 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 DEDDO75618 318 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 PET100P0DJ07 73 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 BCL3P20749 454 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 ATP6V0CP27449 155 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 GDF1P27539 372 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 DYNLT3P51808 116 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 SUCLG1P53597 346 aaKnown RBP7.49□□□□□ -1.21
USP40-203ENST00000427112 SCAND1P57086 179 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 SHBQ15464 509 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 ZNF611Q8N823 705 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 OR5L2Q8NGL0 311 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 MRGPRX4Q96LA9 322 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 TMEM204Q9BSN7 226 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 GAR1Q9NY12 217 aaKnown RBP7.49□□□□□ -1.21
USP40-203ENST00000427112 MTCH2Q9Y6C9 303 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 TMEM131Q92545 1883 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 ABCA4P78363 2273 aa7.49□□□□□ -1.21
USP40-203ENST00000427112 CPAMD8Q8IZJ3 1885 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 NSG1A0A0A6YYJ2 146 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 BORCS7-ASMTA0A0B4J1R7 106 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 IGSF23A1L1A6 192 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 EGR1P18146 543 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 CEBPDP49716 269 aaPredicted RBP7.48□□□□□ -1.21
USP40-203ENST00000427112 RBP2P50120 134 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 DVL1P1P54792 670 aaPredicted RBP7.48□□□□□ -1.21
USP40-203ENST00000427112 EIF5AL1Q6IS14 154 aaKnown RBP7.48□□□□□ -1.21
USP40-203ENST00000427112 RHBDD2Q6NTF9 364 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 OR56B2PQ8NGI1 322 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 MAFAQ8NHW3 353 aaPredicted RBP7.48□□□□□ -1.21
USP40-203ENST00000427112 PRRG4Q9BZD6 226 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 VSIRQ9H7M9 311 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 OR14J1Q9UGF5 321 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 WDR1O75083 606 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 METTL15P1P0C7V9 234 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 RAB5AP20339 215 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 GLP1RP43220 463 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 ZNF84P51523 738 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 CARD18P57730 90 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 TGFBR3Q03167 851 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 SPNS3Q6ZMD2 512 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 Q6ZPA2 131 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 ZNF808Q8N4W9 903 aaPredicted RBP7.48□□□□□ -1.21
USP40-203ENST00000427112 TPRX1Q8N7U7 411 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 AQP10Q96PS8 301 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 GPR61Q9BZJ8 451 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 FZR1Q9UM11 496 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 ZNF816-ZNF321PA0A0X1KG74 233 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 ST8SIA3O43173 380 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 SULT1A2P50226 295 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 PSG4Q00888 419 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 BTNL8Q6UX41 500 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 TBC1D26Q86UD7 250 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 TMEM171Q8WVE6 324 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 HAS2Q92819 552 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 SPTSSAQ969W0 71 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 SCGB3A2Q96PL1 93 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 CCNL2Q96S94 520 aaPredicted RBP7.48□□□□□ -1.21
USP40-203ENST00000427112 NAA60Q9H7X0 242 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 LUZP4Q9P127 313 aa7.48□□□□□ -1.21
USP40-203ENST00000427112 TRAV34A0A0B4J273 112 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 SYNGR1O43759 233 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 CHST1O43916 411 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 JTBO76095 146 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 CXCL1P09341 107 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 NKX2-1P43699 371 aaPredicted RBP7.47□□□□□ -1.21
USP40-203ENST00000427112 SLC35A1P78382 337 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 EWSR1Q01844 656 aaKnown RBP eCLIP7.47□□□□□ -1.21
USP40-203ENST00000427112 MALLQ13021 153 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 PRR31Q5SQ13 230 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 VAX1Q5SQQ9 334 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 DEGS2Q6QHC5 323 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 UQCC3Q6UW78 93 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 RPS19BP1Q86WX3 136 aaKnown RBP7.47□□□□□ -1.21
USP40-203ENST00000427112 SKA3Q8IX90 412 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 OR6X1Q8NH79 312 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 PBDC1Q9BVG4 233 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 NECAP2Q9NVZ3 263 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 CHCHD2Q9Y6H1 151 aaPredicted RBP7.47□□□□□ -1.21
USP40-203ENST00000427112 AQP7P3A6NL99 342 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 SIRPB1O00241 398 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 GATCO43716 136 aaKnown RBP7.47□□□□□ -1.21
USP40-203ENST00000427112 TRGC2P03986 189 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 PMP22Q01453 160 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 ZNF818PQ6ZRF7 136 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 OSR2Q8N2R0 312 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 KDF1Q8NAX2 398 aaPredicted RBP7.47□□□□□ -1.21
USP40-203ENST00000427112 EXTL1Q92935 676 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 CPNE4Q96A23 557 aaPredicted RBP7.47□□□□□ -1.21
USP40-203ENST00000427112 NSG2Q9Y328 171 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 SPENQ96T58 3664 aaKnown RBP7.47□□□□□ -1.21
USP40-203ENST00000427112 TP53I11O14683 189 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 TMEM50AO95807 157 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 SNCAP37840 140 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 RPL23AP62750 156 aaKnown RBP7.47□□□□□ -1.21
USP40-203ENST00000427112 CST9LP1Q5W188 147 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 UNQ6494/PRO21346Q6UXR6 183 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 LGI3Q8N145 548 aa7.47□□□□□ -1.21
USP40-203ENST00000427112 RAB39BQ96DA2 213 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 103.2 ms