RNA–Protein interactions for RNA: ENST00000640499.1

VEGFA-231, Transcript of vascular endothelial growth factor A, human

APPRIS P3 TSL 1 (best) BASIC

Gene VEGFA, Length 1,188 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-231	ENST00000640499	SURF6	O75683	361 aa	Known RBP	33.08	■■■□□ 2.89
VEGFA-231	ENST00000640499	HSPA6	P17066	643 aa		33.07	■■■□□ 2.88
VEGFA-231	ENST00000640499	RBM26	Q5T8P6	1007 aa	Known RBP	33.07	■■■□□ 2.88
VEGFA-231	ENST00000640499	RPAP2	Q8IXW5	612 aa	Predicted RBP	33.07	■■■□□ 2.88
VEGFA-231	ENST00000640499	ARAP2	Q8WZ64	1704 aa		33.07	■■■□□ 2.88
VEGFA-231	ENST00000640499	MYO3B	Q8WXR4	1341 aa		33.06	■■■□□ 2.88
VEGFA-231	ENST00000640499	FKBP1A	P62942	108 aa	Known RBP	33.06	■■■□□ 2.88
VEGFA-231	ENST00000640499		A0A1B0GUL7	405 aa		33.05	■■■□□ 2.88
VEGFA-231	ENST00000640499	VPS37D	Q86XT2	251 aa		33.05	■■■□□ 2.88
VEGFA-231	ENST00000640499	KIAA0825	Q8IV33	1275 aa		33.05	■■■□□ 2.88
VEGFA-231	ENST00000640499	CNTROB	Q8N137	903 aa		33.05	■■■□□ 2.88
VEGFA-231	ENST00000640499	CHMP4B	Q9H444	224 aa	Known RBP	33.05	■■■□□ 2.88
VEGFA-231	ENST00000640499	PASK	Q96RG2	1323 aa		33.04	■■■□□ 2.88
VEGFA-231	ENST00000640499	KIF4B	Q2VIQ3	1234 aa		33.04	■■■□□ 2.88
VEGFA-231	ENST00000640499	ASTN2	O75129	1339 aa	Predicted RBP	33.03	■■■□□ 2.88
VEGFA-231	ENST00000640499	PHKA1	P46020	1223 aa		33.03	■■■□□ 2.88
VEGFA-231	ENST00000640499	GRIK5	Q16478	980 aa		33.03	■■■□□ 2.88
VEGFA-231	ENST00000640499	ZC3H15	Q8WU90	426 aa	Known RBP	33.03	■■■□□ 2.88
VEGFA-231	ENST00000640499	XAGE2	Q96GT9	111 aa		33.03	■■■□□ 2.88
VEGFA-231	ENST00000640499	MYOZ2	Q9NPC6	264 aa		33.03	■■■□□ 2.88
VEGFA-231	ENST00000640499	COL1A1	P02452	1464 aa	Predicted RBP	33.03	■■■□□ 2.88
VEGFA-231	ENST00000640499	AKAP2	Q9Y2D5	859 aa		33.02	■■■□□ 2.88
VEGFA-231	ENST00000640499	FMR1	Q06787	632 aa	Known RBP eCLIP	33.01	■■■□□ 2.87
VEGFA-231	ENST00000640499	EXOC6B	Q9Y2D4	811 aa		33.01	■■■□□ 2.87
VEGFA-231	ENST00000640499	POLR2A	P24928	1970 aa	Known RBP	33	■■■□□ 2.87
VEGFA-231	ENST00000640499	CHAF1A	Q13111	956 aa	Predicted RBP	33	■■■□□ 2.87
VEGFA-231	ENST00000640499	MFSD14B	Q5SR56	506 aa		33	■■■□□ 2.87
VEGFA-231	ENST00000640499	CCDC102B	Q68D86	513 aa		33	■■■□□ 2.87
VEGFA-231	ENST00000640499	CRBN	Q96SW2	442 aa		33	■■■□□ 2.87
VEGFA-231	ENST00000640499	GPR108	Q9NPR9	543 aa		32.99	■■■□□ 2.87
VEGFA-231	ENST00000640499	ZBED3	Q96IU2	234 aa	Predicted RBP	32.98	■■■□□ 2.87
VEGFA-231	ENST00000640499	PCDHAC2	Q9Y5I4	1007 aa		32.98	■■■□□ 2.87
VEGFA-231	ENST00000640499		F8W031	263 aa	Predicted RBP	32.97	■■■□□ 2.87
VEGFA-231	ENST00000640499	TRAF5	O00463	557 aa		32.97	■■■□□ 2.87
VEGFA-231	ENST00000640499	ZBTB22	O15209	634 aa		32.97	■■■□□ 2.87
VEGFA-231	ENST00000640499	HTRA3	P83110	453 aa		32.97	■■■□□ 2.87
VEGFA-231	ENST00000640499	OS9	Q13438	667 aa	Predicted RBP	32.97	■■■□□ 2.87
VEGFA-231	ENST00000640499	SCARF1	Q14162	830 aa		32.97	■■■□□ 2.87
VEGFA-231	ENST00000640499	NBPF9	Q3BBW0	867 aa		32.97	■■■□□ 2.87
VEGFA-231	ENST00000640499	TNNI3K	Q59H18	835 aa		32.97	■■■□□ 2.87
VEGFA-231	ENST00000640499	DLK2	Q6UY11	383 aa		32.97	■■■□□ 2.87
VEGFA-231	ENST00000640499	NEUROD6	Q96NK8	337 aa		32.97	■■■□□ 2.87
VEGFA-231	ENST00000640499	FPGT-TNNI3K	V9GXZ4	949 aa		32.97	■■■□□ 2.87
VEGFA-231	ENST00000640499	APLP1	P51693	650 aa		32.96	■■■□□ 2.87
VEGFA-231	ENST00000640499	OGFOD1	Q8N543	542 aa		32.96	■■■□□ 2.87
VEGFA-231	ENST00000640499	GLIS2	Q9BZE0	524 aa	Predicted RBP	32.96	■■■□□ 2.87
VEGFA-231	ENST00000640499	MYH13	Q9UKX3	1938 aa		32.95	■■■□□ 2.87
VEGFA-231	ENST00000640499	WNT10B	O00744	389 aa		32.95	■■■□□ 2.87
VEGFA-231	ENST00000640499	FRAT2	O75474	233 aa	Predicted RBP	32.95	■■■□□ 2.87
VEGFA-231	ENST00000640499	PCDHB15	Q9Y5E8	787 aa		32.95	■■■□□ 2.87
VEGFA-231	ENST00000640499	MMP14	P50281	582 aa		32.94	■■■□□ 2.86
VEGFA-231	ENST00000640499	SUPT16H	Q9Y5B9	1047 aa	Known RBP	32.94	■■■□□ 2.86
VEGFA-231	ENST00000640499	EAF2	Q96CJ1	260 aa	Predicted RBP	32.93	■■■□□ 2.86
VEGFA-231	ENST00000640499	HDAC9	Q9UKV0	1011 aa		32.93	■■■□□ 2.86
VEGFA-231	ENST00000640499	AOX1	Q06278	1338 aa		32.93	■■■□□ 2.86
VEGFA-231	ENST00000640499	HMMR	O75330	724 aa		32.92	■■■□□ 2.86
VEGFA-231	ENST00000640499	RASGRF1	Q13972	1273 aa		32.92	■■■□□ 2.86
VEGFA-231	ENST00000640499	DBNDD2	Q9BQY9	259 aa		32.92	■■■□□ 2.86
VEGFA-231	ENST00000640499	GNL3L	Q9NVN8	582 aa	Known RBP	32.92	■■■□□ 2.86
VEGFA-231	ENST00000640499	GGA3	Q9NZ52	723 aa		32.92	■■■□□ 2.86
VEGFA-231	ENST00000640499	CEP350	Q5VT06	3117 aa		32.92	■■■□□ 2.86
VEGFA-231	ENST00000640499	ANGEL2	Q5VTE6	544 aa	Known RBP	32.91	■■■□□ 2.86
VEGFA-231	ENST00000640499	USP48	Q86UV5	1035 aa		32.91	■■■□□ 2.86
VEGFA-231	ENST00000640499	MTMR14	Q8NCE2	650 aa		32.91	■■■□□ 2.86
VEGFA-231	ENST00000640499	TBC1D22A	Q8WUA7	517 aa		32.91	■■■□□ 2.86
VEGFA-231	ENST00000640499	TTF2	Q9UNY4	1162 aa	Known RBP	32.91	■■■□□ 2.86
VEGFA-231	ENST00000640499	SEMA3E	O15041	775 aa		32.9	■■■□□ 2.86
VEGFA-231	ENST00000640499	CDC37L1	Q7L3B6	337 aa		32.9	■■■□□ 2.86
VEGFA-231	ENST00000640499	RHPN1	Q8TCX5	695 aa		32.9	■■■□□ 2.86
VEGFA-231	ENST00000640499	TLR7	Q9NYK1	1049 aa	Known RBP	32.9	■■■□□ 2.86
VEGFA-231	ENST00000640499	SCAF8	Q9UPN6	1271 aa	Known RBP	32.9	■■■□□ 2.86
VEGFA-231	ENST00000640499	CFAP100	Q494V2	611 aa		32.89	■■■□□ 2.86
VEGFA-231	ENST00000640499	WDR66	Q8TBY9	1149 aa		32.89	■■■□□ 2.86
VEGFA-231	ENST00000640499	PRMT6	Q96LA8	375 aa	Predicted RBP	32.89	■■■□□ 2.86
VEGFA-231	ENST00000640499	DBNL	Q9UJU6	430 aa	Known RBP	32.89	■■■□□ 2.86
VEGFA-231	ENST00000640499	DENND2A	Q9ULE3	1009 aa		32.89	■■■□□ 2.86
VEGFA-231	ENST00000640499	ADM5	C9JUS6	153 aa		32.88	■■■□□ 2.85
VEGFA-231	ENST00000640499	CST9	Q5W186	159 aa		32.88	■■■□□ 2.85
VEGFA-231	ENST00000640499	ERC1	Q8IUD2	1116 aa		32.88	■■■□□ 2.85
VEGFA-231	ENST00000640499	CCDC8	Q9H0W5	538 aa	Predicted RBP	32.88	■■■□□ 2.85
VEGFA-231	ENST00000640499	ARID4A	P29374	1257 aa	Predicted RBP	32.87	■■■□□ 2.85
VEGFA-231	ENST00000640499	HSP90AB4P	Q58FF6	505 aa		32.87	■■■□□ 2.85
VEGFA-231	ENST00000640499	KRT26	Q7Z3Y9	468 aa		32.87	■■■□□ 2.85
VEGFA-231	ENST00000640499	DCPS	Q96C86	337 aa	Known RBP	32.87	■■■□□ 2.85
VEGFA-231	ENST00000640499	IL1RAPL2	Q9NP60	686 aa		32.87	■■■□□ 2.85
VEGFA-231	ENST00000640499	SALL1	Q9NSC2	1324 aa		32.86	■■■□□ 2.85
VEGFA-231	ENST00000640499	APBB1	O00213	710 aa		32.86	■■■□□ 2.85
VEGFA-231	ENST00000640499	DLGAP5	Q15398	846 aa		32.86	■■■□□ 2.85
VEGFA-231	ENST00000640499	PI16	Q6UXB8	463 aa		32.86	■■■□□ 2.85
VEGFA-231	ENST00000640499	DNAJC5G	Q8N7S2	189 aa		32.86	■■■□□ 2.85
VEGFA-231	ENST00000640499	HMG20B	Q9P0W2	317 aa		32.86	■■■□□ 2.85
VEGFA-231	ENST00000640499	SERPINA10	Q9UK55	444 aa		32.86	■■■□□ 2.85
VEGFA-231	ENST00000640499	PDS5A	Q29RF7	1337 aa	Known RBP	32.85	■■■□□ 2.85
VEGFA-231	ENST00000640499	TRPM7	Q96QT4	1865 aa		32.85	■■■□□ 2.85
VEGFA-231	ENST00000640499	SPDYE2B	A6NHP3	402 aa		32.85	■■■□□ 2.85
VEGFA-231	ENST00000640499	SPDYE6	P0CI01	402 aa		32.85	■■■□□ 2.85
VEGFA-231	ENST00000640499	SUGT1	Q9Y2Z0	365 aa		32.85	■■■□□ 2.85
VEGFA-231	ENST00000640499	PITPNM2	Q9BZ72	1349 aa		32.84	■■■□□ 2.85
VEGFA-231	ENST00000640499	CRK	P46108	304 aa		32.84	■■■□□ 2.85
VEGFA-231	ENST00000640499	GORAB	Q5T7V8	394 aa		32.84	■■■□□ 2.85

Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms