RNA–Protein interactions for RNA: ENST00000637107.1

CLN3-256, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,946 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-256ENST00000637107 NEUROD6Q96NK8 337 aa20.92■□□□□ 0.94
CLN3-256ENST00000637107 FPGT-TNNI3KV9GXZ4 949 aa20.92■□□□□ 0.94
CLN3-256ENST00000637107 ZNF609O15014 1411 aa20.91■□□□□ 0.94
CLN3-256ENST00000637107 K7ELQ4 463 aaPredicted RBP20.91■□□□□ 0.94
CLN3-256ENST00000637107 FZD9O00144 591 aa20.91■□□□□ 0.94
CLN3-256ENST00000637107 DDIT3P35638 169 aa20.91■□□□□ 0.94
CLN3-256ENST00000637107 BCAMP50895 628 aa20.91■□□□□ 0.94
CLN3-256ENST00000637107 RILPL2Q969X0 211 aa20.91■□□□□ 0.94
CLN3-256ENST00000637107 SCN9AQ15858 1988 aa20.91■□□□□ 0.94
CLN3-256ENST00000637107 TRIM6-TRIM34B2RNG4 842 aa20.9■□□□□ 0.94
CLN3-256ENST00000637107 EAF2Q96CJ1 260 aaPredicted RBP20.9■□□□□ 0.94
CLN3-256ENST00000637107 ZNRF3Q9ULT6 936 aa20.9■□□□□ 0.94
CLN3-256ENST00000637107 XAGE2Q96GT9 111 aa20.9■□□□□ 0.94
CLN3-256ENST00000637107 ESYT1Q9BSJ8 1104 aa20.9■□□□□ 0.94
CLN3-256ENST00000637107 COA1Q9GZY4 146 aa20.9■□□□□ 0.94
CLN3-256ENST00000637107 CD209Q9NNX6 404 aa20.9■□□□□ 0.94
CLN3-256ENST00000637107 ZNF541Q9H0D2 1346 aa20.89■□□□□ 0.94
CLN3-256ENST00000637107 CHMLP26374 656 aa20.89■□□□□ 0.93
CLN3-256ENST00000637107 HIBADHP31937 336 aaKnown RBP20.89■□□□□ 0.93
CLN3-256ENST00000637107 CAVIN4Q5BKX8 364 aa20.89■□□□□ 0.93
CLN3-256ENST00000637107 ZNF804AQ7Z570 1209 aa20.89■□□□□ 0.93
CLN3-256ENST00000637107 GPR108Q9NPR9 543 aa20.89■□□□□ 0.93
CLN3-256ENST00000637107 ARAP2Q8WZ64 1704 aa20.88■□□□□ 0.93
CLN3-256ENST00000637107 RAD17O75943 681 aa20.88■□□□□ 0.93
CLN3-256ENST00000637107 FBXO33Q7Z6M2 555 aa20.88■□□□□ 0.93
CLN3-256ENST00000637107 CCDC8Q9H0W5 538 aaPredicted RBP20.88■□□□□ 0.93
CLN3-256ENST00000637107 TLR7Q9NYK1 1049 aaKnown RBP20.88■□□□□ 0.93
CLN3-256ENST00000637107 IQSEC3Q9UPP2 1182 aaPredicted RBP20.88■□□□□ 0.93
CLN3-256ENST00000637107 CXCL9Q07325 125 aa20.88■□□□□ 0.93
CLN3-256ENST00000637107 PODNQ7Z5L7 613 aa20.88■□□□□ 0.93
CLN3-256ENST00000637107 VPS37DQ86XT2 251 aa20.88■□□□□ 0.93
CLN3-256ENST00000637107 PI4K2BQ8TCG2 481 aa20.88■□□□□ 0.93
CLN3-256ENST00000637107 AACSQ86V21 672 aa20.87■□□□□ 0.93
CLN3-256ENST00000637107 DBNDD2Q9BQY9 259 aa20.87■□□□□ 0.93
CLN3-256ENST00000637107 IL1R1P14778 569 aa20.86■□□□□ 0.93
CLN3-256ENST00000637107 PHKA1P46020 1223 aa20.86■□□□□ 0.93
CLN3-256ENST00000637107 EIF6P56537 245 aaKnown RBP20.86■□□□□ 0.93
CLN3-256ENST00000637107 GSE1Q14687 1217 aa20.86■□□□□ 0.93
CLN3-256ENST00000637107 CLASRPQ8N2M8 674 aaKnown RBP20.86■□□□□ 0.93
CLN3-256ENST00000637107 DBNLQ9UJU6 430 aaKnown RBP20.86■□□□□ 0.93
CLN3-256ENST00000637107 ZC3H4Q9UPT8 1303 aaKnown RBP20.86■□□□□ 0.93
CLN3-256ENST00000637107 CCDC102BQ68D86 513 aa20.86■□□□□ 0.93
CLN3-256ENST00000637107 CIZ1Q9ULV3 898 aaPredicted RBP20.86■□□□□ 0.93
CLN3-256ENST00000637107 DDNO94850 711 aaPredicted RBP20.85■□□□□ 0.93
CLN3-256ENST00000637107 TDRD7Q8NHU6 1098 aaKnown RBP20.85■□□□□ 0.93
CLN3-256ENST00000637107 JAG2Q9Y219 1238 aa20.85■□□□□ 0.93
CLN3-256ENST00000637107 PSMD14O00487 310 aa20.84■□□□□ 0.93
CLN3-256ENST00000637107 GORABQ5T7V8 394 aa20.84■□□□□ 0.93
CLN3-256ENST00000637107 FBXW7Q969H0 707 aa20.84■□□□□ 0.93
CLN3-256ENST00000637107 GJA3Q9Y6H8 435 aa20.84■□□□□ 0.93
CLN3-256ENST00000637107 GTF2IP78347 998 aa20.83■□□□□ 0.93
CLN3-256ENST00000637107 CIAPIN1Q6FI81 312 aa20.83■□□□□ 0.93
CLN3-256ENST00000637107 TTC41PQ6P2S7 1318 aa20.83■□□□□ 0.92
CLN3-256ENST00000637107 GLTPD2A6NH11 291 aa20.82■□□□□ 0.92
CLN3-256ENST00000637107 HSP90AA1P07900 732 aaKnown RBP20.82■□□□□ 0.92
CLN3-256ENST00000637107 MCM4P33991 863 aa20.82■□□□□ 0.92
CLN3-256ENST00000637107 TTLL5Q6EMB2 1281 aa20.82■□□□□ 0.92
CLN3-256ENST00000637107 DPY19L2Q6NUT2 758 aa20.82■□□□□ 0.92
CLN3-256ENST00000637107 MXD3Q9BW11 206 aa20.82■□□□□ 0.92
CLN3-256ENST00000637107 ZNF646O15015 1829 aaPredicted RBP20.82■□□□□ 0.92
CLN3-256ENST00000637107 PSME4Q14997 1843 aa20.82■□□□□ 0.92
CLN3-256ENST00000637107 USP17L3A6NCW0 530 aa20.82■□□□□ 0.92
CLN3-256ENST00000637107 USP17L4A6NCW7 530 aa20.82■□□□□ 0.92
CLN3-256ENST00000637107 MAP4K4O95819 1239 aaPredicted RBP20.82■□□□□ 0.92
CLN3-256ENST00000637107 IFIT2P09913 472 aaKnown RBP20.82■□□□□ 0.92
CLN3-256ENST00000637107 YY1P25490 414 aa20.82■□□□□ 0.92
CLN3-256ENST00000637107 USP17L1Q7RTZ2 530 aa20.82■□□□□ 0.92
CLN3-256ENST00000637107 ZNF526Q8TF50 670 aaPredicted RBP20.82■□□□□ 0.92
CLN3-256ENST00000637107 FOXD4L1Q9NU39 408 aa20.82■□□□□ 0.92
CLN3-256ENST00000637107 ZBTB12Q9Y330 459 aaPredicted RBP20.82■□□□□ 0.92
CLN3-256ENST00000637107 GPC2Q8N158 579 aa20.81■□□□□ 0.92
CLN3-256ENST00000637107 MYH13Q9UKX3 1938 aa20.81■□□□□ 0.92
CLN3-256ENST00000637107 COL1A1P02452 1464 aaPredicted RBP20.81■□□□□ 0.92
CLN3-256ENST00000637107 TNIP1Q15025 636 aa20.8■□□□□ 0.92
CLN3-256ENST00000637107 AK9Q5TCS8 1911 aa20.8■□□□□ 0.92
CLN3-256ENST00000637107 VIL1P09327 827 aaKnown RBP20.8■□□□□ 0.92
CLN3-256ENST00000637107 CHAF1AQ13111 956 aaPredicted RBP20.8■□□□□ 0.92
CLN3-256ENST00000637107 SCARF1Q14162 830 aa20.8■□□□□ 0.92
CLN3-256ENST00000637107 DACT2Q5SW24 774 aa20.8■□□□□ 0.92
CLN3-256ENST00000637107 STRIP1Q5VSL9 837 aa20.8■□□□□ 0.92
CLN3-256ENST00000637107 CNTROBQ8N137 903 aa20.8■□□□□ 0.92
CLN3-256ENST00000637107 ST18O60284 1047 aa20.79■□□□□ 0.92
CLN3-256ENST00000637107 GLRX3O76003 335 aaKnown RBP20.79■□□□□ 0.92
CLN3-256ENST00000637107 RASGRF1Q13972 1273 aa20.79■□□□□ 0.92
CLN3-256ENST00000637107 CCDC158Q5M9N0 1113 aa20.79■□□□□ 0.92
CLN3-256ENST00000637107 ANO2Q9NQ90 1003 aa20.79■□□□□ 0.92
CLN3-256ENST00000637107 GNL3LQ9NVN8 582 aaKnown RBP20.79■□□□□ 0.92
CLN3-256ENST00000637107 MCCP23508 829 aa20.78■□□□□ 0.92
CLN3-256ENST00000637107 TTC39AQ5SRH9 613 aa20.78■□□□□ 0.92
CLN3-256ENST00000637107 PI16Q6UXB8 463 aa20.78■□□□□ 0.92
CLN3-256ENST00000637107 EPB41L2O43491 1005 aaKnown RBP20.78■□□□□ 0.92
CLN3-256ENST00000637107 ARID4AP29374 1257 aaPredicted RBP20.78■□□□□ 0.92
CLN3-256ENST00000637107 MCAMP43121 646 aa20.78■□□□□ 0.92
CLN3-256ENST00000637107 RSBN1LQ6PCB5 846 aaPredicted RBP20.78■□□□□ 0.92
CLN3-256ENST00000637107 CERS5Q8N5B7 392 aa20.78■□□□□ 0.92
CLN3-256ENST00000637107 ECHDC1Q9NTX5 307 aa20.78■□□□□ 0.92
CLN3-256ENST00000637107 FAM205AQ6ZU69 1335 aa20.78■□□□□ 0.92
CLN3-256ENST00000637107 GMPSP49915 693 aaPredicted RBP20.77■□□□□ 0.92
CLN3-256ENST00000637107 RAB3GAP1Q15042 981 aa20.77■□□□□ 0.92
CLN3-256ENST00000637107 SCNN1DP51172 638 aa20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms