RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 BIN1O00499 593 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 CIAO1O76071 339 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 ARID5BQ14865 1188 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 STK38Q15208 465 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 ISCA1Q9BUE6 129 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 TBC1D2BQ9UPU7 963 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 ARFGEF2Q9Y6D5 1785 aa15.12■□□□□ 0.01
CCDC88A-214ENST00000621814 SNAP23O00161 211 aa15.11■□□□□ 0.01
CCDC88A-214ENST00000621814 ZNF592Q92610 1267 aa15.11■□□□□ 0.01
CCDC88A-214ENST00000621814 ZNF274Q96GC6 653 aaPredicted RBP15.11■□□□□ 0.01
CCDC88A-214ENST00000621814 INCENPQ9NQS7 918 aa15.11■□□□□ 0.01
CCDC88A-214ENST00000621814 PCDHA7Q9UN72 937 aa15.11■□□□□ 0.01
CCDC88A-214ENST00000621814 FOXP2O15409 715 aa15.11■□□□□ 0.01
CCDC88A-214ENST00000621814 CCDC144BQ3MJ40 725 aa15.11■□□□□ 0.01
CCDC88A-214ENST00000621814 SPTLC3Q9NUV7 552 aa15.11■□□□□ 0.01
CCDC88A-214ENST00000621814 TPM3P06753 285 aa15.11■□□□□ 0.01
CCDC88A-214ENST00000621814 MCAMP43121 646 aa15.11■□□□□ 0.01
CCDC88A-214ENST00000621814 SNW1Q13573 536 aaKnown RBP15.11■□□□□ 0.01
CCDC88A-214ENST00000621814 ZRSR1Q15695 479 aaKnown RBP15.11■□□□□ 0.01
CCDC88A-214ENST00000621814 LRRFIP1Q32MZ4 808 aaKnown RBP15.11■□□□□ 0.01
CCDC88A-214ENST00000621814 AIFM3Q96NN9 605 aa15.11■□□□□ 0.01
CCDC88A-214ENST00000621814 SLAIN2Q9P270 581 aa15.11■□□□□ 0.01
CCDC88A-214ENST00000621814 TRMT112Q9UI30 125 aaKnown RBP15.11■□□□□ 0.01
CCDC88A-214ENST00000621814 NCOA7Q8NI08 942 aa15.1■□□□□ 0.01
CCDC88A-214ENST00000621814 ADAMTSL3P82987 1691 aa15.1■□□□□ 0.01
CCDC88A-214ENST00000621814 STARD3NLO95772 234 aa15.1■□□□□ 0.01
CCDC88A-214ENST00000621814 ZSCAN25Q6NSZ9 544 aa15.1■□□□□ 0.01
CCDC88A-214ENST00000621814 RBM43Q6ZSC3 357 aaKnown RBP15.1■□□□□ 0.01
CCDC88A-214ENST00000621814 ZBTB38Q8NAP3 1195 aaPredicted RBP15.1■□□□□ 0.01
CCDC88A-214ENST00000621814 PRIMPOLQ96LW4 560 aa15.1■□□□□ 0.01
CCDC88A-214ENST00000621814 RIOK3O14730 519 aaKnown RBP15.09■□□□□ 0.01
CCDC88A-214ENST00000621814 MARCKSP29966 332 aaPredicted RBP15.09■□□□□ 0.01
CCDC88A-214ENST00000621814 NDUFA8P51970 172 aa15.09■□□□□ 0.01
CCDC88A-214ENST00000621814 TRDNQ13061 729 aa15.09■□□□□ 0.01
CCDC88A-214ENST00000621814 TDRD7Q8NHU6 1098 aaKnown RBP15.09■□□□□ 0.01
CCDC88A-214ENST00000621814 NKX2-3Q8TAU0 364 aa15.09■□□□□ 0.01
CCDC88A-214ENST00000621814 CACTINQ8WUQ7 758 aaKnown RBP15.09■□□□□ 0.01
CCDC88A-214ENST00000621814 APPBP2Q92624 585 aa15.09■□□□□ 0.01
CCDC88A-214ENST00000621814 CARD10Q9BWT7 1032 aa15.09■□□□□ 0.01
CCDC88A-214ENST00000621814 CPDO75976 1380 aa15.09■□□□□ 0.01
CCDC88A-214ENST00000621814 FAM160A1Q05DH4 1040 aa15.09■□□□□ 0.01
CCDC88A-214ENST00000621814 STX1AQ16623 288 aa15.09■□□□□ 0.01
CCDC88A-214ENST00000621814 SYNE3Q6ZMZ3 975 aa15.09■□□□□ 0.01
CCDC88A-214ENST00000621814 PLA2G4DQ86XP0 818 aa15.09■□□□□ 0.01
CCDC88A-214ENST00000621814 AOPEPQ8N6M6 819 aa15.09■□□□□ 0.01
CCDC88A-214ENST00000621814 MYL10Q9BUA6 226 aa15.09■□□□□ 0.01
CCDC88A-214ENST00000621814 AGXT2Q9BYV1 514 aa15.09■□□□□ 0.01
CCDC88A-214ENST00000621814 ATG3Q9NT62 314 aa15.09■□□□□ 0.01
CCDC88A-214ENST00000621814 GNL2Q13823 731 aaKnown RBP15.08■□□□□ 0.01
CCDC88A-214ENST00000621814 IRS4O14654 1257 aaPredicted RBP15.08■□□□□ 0
CCDC88A-214ENST00000621814 PCCAP05165 728 aaPredicted RBP15.08■□□□□ 0
CCDC88A-214ENST00000621814 ANTXR2P58335 489 aa15.08■□□□□ 0
CCDC88A-214ENST00000621814 TPD52L1Q16890 204 aaPredicted RBP15.08■□□□□ 0
CCDC88A-214ENST00000621814 MICU3Q86XE3 530 aa15.08■□□□□ 0
CCDC88A-214ENST00000621814 PHKBQ93100 1093 aa15.08■□□□□ 0
CCDC88A-214ENST00000621814 COL18A1P39060 1754 aa15.08■□□□□ 0
CCDC88A-214ENST00000621814 ANKRD18BA2A2Z9 1011 aa15.08■□□□□ 0
CCDC88A-214ENST00000621814 NFXL1Q6ZNB6 911 aa15.08■□□□□ 0
CCDC88A-214ENST00000621814 TTLL11Q8NHH1 800 aa15.08■□□□□ 0
CCDC88A-214ENST00000621814 MRPS27Q92552 414 aaKnown RBP15.08■□□□□ 0
CCDC88A-214ENST00000621814 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.08■□□□□ 02e-6■□□□□ 8.9
CCDC88A-214ENST00000621814 TOMM22Q9NS69 142 aa15.08■□□□□ 0
CCDC88A-214ENST00000621814 BTG4Q9NY30 223 aa15.08■□□□□ 0
CCDC88A-214ENST00000621814 B4E1Z4 1266 aa15.07■□□□□ 0
CCDC88A-214ENST00000621814 ZFYP08048 801 aaPredicted RBP15.07■□□□□ 0
CCDC88A-214ENST00000621814 IQCB1Q15051 598 aa15.07■□□□□ 0
CCDC88A-214ENST00000621814 SENP2Q9HC62 589 aa15.07■□□□□ 0
CCDC88A-214ENST00000621814 SALL1Q9NSC2 1324 aa15.07■□□□□ 0
CCDC88A-214ENST00000621814 KIF28PB7ZC32 967 aa15.07■□□□□ 0
CCDC88A-214ENST00000621814 DHX16O60231 1041 aaKnown RBP15.07■□□□□ 0
CCDC88A-214ENST00000621814 PHKA1P46020 1223 aa15.07■□□□□ 0
CCDC88A-214ENST00000621814 NKX1-1Q15270 411 aaPredicted RBP15.07■□□□□ 0
CCDC88A-214ENST00000621814 CCDC82Q8N4S0 544 aa15.07■□□□□ 0
CCDC88A-214ENST00000621814 PIH1D3Q9NQM4 214 aaKnown RBP15.07■□□□□ 0
CCDC88A-214ENST00000621814 HPS5Q9UPZ3 1129 aa15.07■□□□□ 0
CCDC88A-214ENST00000621814 LMTK3Q96Q04 1460 aa15.06■□□□□ 0
CCDC88A-214ENST00000621814 NLRP10Q86W26 655 aa15.06■□□□□ 0
CCDC88A-214ENST00000621814 MB21D2Q8IYB1 491 aaPredicted RBP15.06■□□□□ 0
CCDC88A-214ENST00000621814 TRMT1Q9NXH9 659 aaKnown RBP15.06■□□□□ 0
CCDC88A-214ENST00000621814 CTAGE5O15320 804 aa15.06■□□□□ 0
CCDC88A-214ENST00000621814 RRP12Q5JTH9 1297 aaKnown RBP15.06■□□□□ 0
CCDC88A-214ENST00000621814 ANO10Q9NW15 660 aa15.06■□□□□ 0
CCDC88A-214ENST00000621814 ZBTB1Q9Y2K1 713 aa15.06■□□□□ 0
CCDC88A-214ENST00000621814 ZNF532Q9HCE3 1301 aa15.06■□□□□ 0
CCDC88A-214ENST00000621814 UBE2Q2LH0YL09 131 aa15.06■□□□□ 0
CCDC88A-214ENST00000621814 SPTLC2O15270 562 aa15.06■□□□□ 0
CCDC88A-214ENST00000621814 GIGYF2Q6Y7W6 1299 aaKnown RBP15.06■□□□□ 0
CCDC88A-214ENST00000621814 TBC1D10CQ8IV04 446 aa15.06■□□□□ 0
CCDC88A-214ENST00000621814 LINC00301Q8NCQ3 95 aa15.06■□□□□ 0
CCDC88A-214ENST00000621814 ENGASEQ8NFI3 743 aa15.06■□□□□ 0
CCDC88A-214ENST00000621814 FBXO18Q8NFZ0 1043 aa15.06■□□□□ 0
CCDC88A-214ENST00000621814 WWC3Q9ULE0 1092 aa15.06■□□□□ 0
CCDC88A-214ENST00000621814 RIPOR2Q9Y4F9 1068 aa15.06■□□□□ 0
CCDC88A-214ENST00000621814 TNNT1P13805 278 aa15.05■□□□□ 0
CCDC88A-214ENST00000621814 CYB5R4Q7L1T6 521 aa15.05■□□□□ 0
CCDC88A-214ENST00000621814 CEP57L1Q8IYX8 460 aa15.05■□□□□ 0
CCDC88A-214ENST00000621814 ZNF710Q8N1W2 664 aa15.05■□□□□ 0
CCDC88A-214ENST00000621814 BCL2L12Q9HB09 334 aa15.05■□□□□ 0
CCDC88A-214ENST00000621814 METAP2P50579 478 aaKnown RBP eCLIP15.05■□□□□ -0
CCDC88A-214ENST00000621814 CTSWP56202 376 aa15.05■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms