RNA–Protein interactions for RNA: ENST00000621131.4

VPS29-212, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,124 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-212ENST00000621131 A0A1W2PP55 124 aa9.71□□□□□ -0.86
VPS29-212ENST00000621131 IGHA2P01877 340 aa9.71□□□□□ -0.86
VPS29-212ENST00000621131 C19orf57Q0VDD7 668 aa9.71□□□□□ -0.86
VPS29-212ENST00000621131 ASAP3Q8TDY4 903 aa9.71□□□□□ -0.86
VPS29-212ENST00000621131 METTL12A8MUP2 240 aa9.7□□□□□ -0.86
VPS29-212ENST00000621131 NEFLP07196 543 aa9.7□□□□□ -0.86
VPS29-212ENST00000621131 ARL4DP49703 201 aa9.7□□□□□ -0.86
VPS29-212ENST00000621131 PDE3BQ13370 1112 aa9.7□□□□□ -0.86
VPS29-212ENST00000621131 IKBKEQ14164 716 aa9.7□□□□□ -0.86
VPS29-212ENST00000621131 ARMC10Q8N2F6 343 aa9.7□□□□□ -0.86
VPS29-212ENST00000621131 FAM46AQ96IP4 442 aaKnown RBP9.7□□□□□ -0.86
VPS29-212ENST00000621131 CEP41Q9BYV8 373 aa9.7□□□□□ -0.86
VPS29-212ENST00000621131 ESRRAP11474 423 aaPredicted RBP9.69□□□□□ -0.86
VPS29-212ENST00000621131 NLRP12P59046 1061 aa9.69□□□□□ -0.86
VPS29-212ENST00000621131 ORC1Q13415 861 aa9.69□□□□□ -0.86
VPS29-212ENST00000621131 CCNJLQ8IV13 435 aa9.69□□□□□ -0.86
VPS29-212ENST00000621131 TCF12Q99081 682 aa9.69□□□□□ -0.86
VPS29-212ENST00000621131 SOWAHDA6NJG2 315 aa9.68□□□□□ -0.86
VPS29-212ENST00000621131 KIAA0319Q5VV43 1072 aa9.68□□□□□ -0.86
VPS29-212ENST00000621131 SLC51AQ86UW1 340 aa9.68□□□□□ -0.86
VPS29-212ENST00000621131 SOX17Q9H6I2 414 aaPredicted RBP9.68□□□□□ -0.86
VPS29-212ENST00000621131 GNEQ9Y223 722 aaKnown RBP9.68□□□□□ -0.86
VPS29-212ENST00000621131 RAXQ9Y2V3 346 aa9.68□□□□□ -0.86
VPS29-212ENST00000621131 MEGF11A6BM72 1044 aa9.67□□□□□ -0.86
VPS29-212ENST00000621131 BRD1O95696 1058 aa9.67□□□□□ -0.86
VPS29-212ENST00000621131 A0A096LPE4 126 aa9.66□□□□□ -0.86
VPS29-212ENST00000621131 A0A1W2PPZ6 126 aa9.66□□□□□ -0.86
VPS29-212ENST00000621131 GPR182O15218 404 aa9.66□□□□□ -0.86
VPS29-212ENST00000621131 CPNE3O75131 537 aaKnown RBP9.66□□□□□ -0.86
VPS29-212ENST00000621131 FSTP19883 344 aa9.66□□□□□ -0.86
VPS29-212ENST00000621131 GRIA4P48058 902 aa9.66□□□□□ -0.86
VPS29-212ENST00000621131 SPRED3Q2MJR0 410 aa9.66□□□□□ -0.86
VPS29-212ENST00000621131 UVSSAQ2YD98 709 aa9.66□□□□□ -0.86
VPS29-212ENST00000621131 ARTNQ5T4W7 220 aa9.66□□□□□ -0.86
VPS29-212ENST00000621131 RBCK1Q9BYM8 510 aa9.66□□□□□ -0.86
VPS29-212ENST00000621131 NIF3L1Q9GZT8 377 aa9.66□□□□□ -0.86
VPS29-212ENST00000621131 RNF208Q9H0X6 261 aa9.66□□□□□ -0.86
VPS29-212ENST00000621131 LIN7BQ9HAP6 207 aa9.66□□□□□ -0.86
VPS29-212ENST00000621131 DHX15O43143 795 aaKnown RBP9.65□□□□□ -0.86
VPS29-212ENST00000621131 RUSC1Q9BVN2 902 aa9.65□□□□□ -0.86
VPS29-212ENST00000621131 ZNF423Q2M1K9 1284 aa9.64□□□□□ -0.87
VPS29-212ENST00000621131 ANKRD34AQ69YU3 496 aa9.64□□□□□ -0.87
VPS29-212ENST00000621131 MYRFLQ96LU7 910 aa9.64□□□□□ -0.87
VPS29-212ENST00000621131 DNAJC25Q9H1X3 360 aa9.64□□□□□ -0.87
VPS29-212ENST00000621131 STOML1Q9UBI4 398 aa9.64□□□□□ -0.87
VPS29-212ENST00000621131 RNF112Q9ULX5 631 aa9.64□□□□□ -0.87
VPS29-212ENST00000621131 SCO2A0A1W2PP80 73 aa9.63□□□□□ -0.87
VPS29-212ENST00000621131 EIF1AYO14602 144 aaKnown RBP9.63□□□□□ -0.87
VPS29-212ENST00000621131 DLGAP3O95886 979 aa9.63□□□□□ -0.87
VPS29-212ENST00000621131 TMC1Q8TDI8 760 aa9.63□□□□□ -0.87
VPS29-212ENST00000621131 UTP4Q969X6 686 aaKnown RBP9.63□□□□□ -0.87
VPS29-212ENST00000621131 ALKBH8Q96BT7 664 aaKnown RBP9.63□□□□□ -0.87
VPS29-212ENST00000621131 TMPRSS13Q9BYE2 586 aa9.63□□□□□ -0.87
VPS29-212ENST00000621131 CLEC4MQ9H2X3 399 aaPredicted RBP9.63□□□□□ -0.87
VPS29-212ENST00000621131 LOC100289279A0A1B0GTE1 492 aa9.62□□□□□ -0.87
VPS29-212ENST00000621131 PREPP48147 710 aa9.62□□□□□ -0.87
VPS29-212ENST00000621131 PCDH1Q08174 1060 aa9.62□□□□□ -0.87
VPS29-212ENST00000621131 CCDC74AQ96AQ1 378 aa9.62□□□□□ -0.87
VPS29-212ENST00000621131 DMRTB1Q96MA1 342 aa9.62□□□□□ -0.87
VPS29-212ENST00000621131 NRSN2Q9GZP1 204 aa9.62□□□□□ -0.87
VPS29-212ENST00000621131 NPHS2Q9NP85 383 aa9.62□□□□□ -0.87
VPS29-212ENST00000621131 ZFP64Q9NPA5 681 aa9.62□□□□□ -0.87
VPS29-212ENST00000621131 HYAL3O43820 417 aaPredicted RBP9.61□□□□□ -0.87
VPS29-212ENST00000621131 GSTM4Q03013 218 aa9.61□□□□□ -0.87
VPS29-212ENST00000621131 FAM20CQ8IXL6 584 aa9.61□□□□□ -0.87
VPS29-212ENST00000621131 SART1O43290 800 aaKnown RBP9.6□□□□□ -0.87
VPS29-212ENST00000621131 IGLV1-40P01703 118 aa9.6□□□□□ -0.87
VPS29-212ENST00000621131 LRP8Q14114 963 aa9.6□□□□□ -0.87
VPS29-212ENST00000621131 EXOSC6Q5RKV6 272 aaKnown RBP9.6□□□□□ -0.87
VPS29-212ENST00000621131 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.6□□□□□ -0.87
VPS29-212ENST00000621131 SMG8Q8ND04 991 aaKnown RBP9.6□□□□□ -0.87
VPS29-212ENST00000621131 CSRNP1Q96S65 589 aa9.6□□□□□ -0.87
VPS29-212ENST00000621131 USP26Q9BXU7 913 aa9.6□□□□□ -0.87
VPS29-212ENST00000621131 EHD4Q9H223 541 aa9.6□□□□□ -0.87
VPS29-212ENST00000621131 BMP3P12645 472 aa9.59□□□□□ -0.87
VPS29-212ENST00000621131 ITPKAP23677 461 aa9.59□□□□□ -0.87
VPS29-212ENST00000621131 NUTM2GQ5VZR2 741 aa9.59□□□□□ -0.87
VPS29-212ENST00000621131 FDX2Q6P4F2 183 aa9.59□□□□□ -0.87
VPS29-212ENST00000621131 TMC7Q7Z402 723 aa9.59□□□□□ -0.87
VPS29-212ENST00000621131 CLEC10AQ8IUN9 316 aa9.59□□□□□ -0.87
VPS29-212ENST00000621131 TRIM42Q8IWZ5 723 aa9.59□□□□□ -0.87
VPS29-212ENST00000621131 FAM83CQ9BQN1 747 aa9.59□□□□□ -0.87
VPS29-212ENST00000621131 C7orf69Q9H7B7 122 aa9.59□□□□□ -0.87
VPS29-212ENST00000621131 SUGCTQ9HAC7 445 aa9.59□□□□□ -0.87
VPS29-212ENST00000621131 HMX2A2RU54 273 aa9.58□□□□□ -0.88
VPS29-212ENST00000621131 GSC2O15499 205 aa9.58□□□□□ -0.88
VPS29-212ENST00000621131 EIF4EBP3O60516 100 aaPredicted RBP9.58□□□□□ -0.88
VPS29-212ENST00000621131 TIAF1O95411 115 aa9.58□□□□□ -0.88
VPS29-212ENST00000621131 BIN2Q9UBW5 565 aaPredicted RBP9.58□□□□□ -0.88
VPS29-212ENST00000621131 DCTN4Q9UJW0 460 aa9.58□□□□□ -0.88
VPS29-212ENST00000621131 PTPN12Q05209 780 aaKnown RBP9.57□□□□□ -0.88
VPS29-212ENST00000621131 RNF43Q68DV7 783 aa9.57□□□□□ -0.88
VPS29-212ENST00000621131 C12orf50Q8NA57 414 aaPredicted RBP9.57□□□□□ -0.88
VPS29-212ENST00000621131 ZNF576Q9H609 170 aa9.57□□□□□ -0.88
VPS29-212ENST00000621131 CYP4F12Q9HCS2 524 aa9.57□□□□□ -0.88
VPS29-212ENST00000621131 HIF3AQ9Y2N7 669 aa9.57□□□□□ -0.88
VPS29-212ENST00000621131 B3GALT4O96024 378 aa9.56□□□□□ -0.88
VPS29-212ENST00000621131 CTSBP07858 339 aa9.56□□□□□ -0.88
VPS29-212ENST00000621131 NFIAQ12857 509 aa9.56□□□□□ -0.88
VPS29-212ENST00000621131 DSC3Q14574 896 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms