RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 ELNP15502 786 aa6.29□□□□□ -1.4
CKS1BP3-201ENST00000600888 GRIA4P48058 902 aa6.29□□□□□ -1.4
CKS1BP3-201ENST00000600888 CABP4P57796 275 aa6.29□□□□□ -1.4
CKS1BP3-201ENST00000600888 GRM2Q14416 872 aa6.29□□□□□ -1.4
CKS1BP3-201ENST00000600888 GRIK4Q16099 956 aa6.29□□□□□ -1.4
CKS1BP3-201ENST00000600888 SPRED3Q2MJR0 410 aa6.29□□□□□ -1.4
CKS1BP3-201ENST00000600888 VN1R5Q7Z5H4 357 aa6.29□□□□□ -1.4
CKS1BP3-201ENST00000600888 MAP4K3Q8IVH8 894 aa6.29□□□□□ -1.4
CKS1BP3-201ENST00000600888 TRAK1Q9UPV9 953 aa6.29□□□□□ -1.4
CKS1BP3-201ENST00000600888 H3BRJ5 948 aa6.28□□□□□ -1.4
CKS1BP3-201ENST00000600888 MFAP1P55081 439 aaKnown RBP6.28□□□□□ -1.4
CKS1BP3-201ENST00000600888 PRPF40BQ6NWY9 871 aaKnown RBP6.28□□□□□ -1.4
CKS1BP3-201ENST00000600888 FAM117BQ6P1L5 589 aa6.28□□□□□ -1.4
CKS1BP3-201ENST00000600888 TXNDC11Q6PKC3 985 aa6.28□□□□□ -1.4
CKS1BP3-201ENST00000600888 GLIS3Q8NEA6 775 aa6.28□□□□□ -1.4
CKS1BP3-201ENST00000600888 BCO2Q9BYV7 579 aa6.28□□□□□ -1.4
CKS1BP3-201ENST00000600888 SRA1Q9HD15 236 aaKnown RBP6.28□□□□□ -1.4
CKS1BP3-201ENST00000600888 PPP4R2Q9NY27 417 aa6.28□□□□□ -1.4
CKS1BP3-201ENST00000600888 WIZO95785 1651 aa6.27□□□□□ -1.41
CKS1BP3-201ENST00000600888 TMEM238LA0A1B0GVL6 79 aa6.27□□□□□ -1.41
CKS1BP3-201ENST00000600888 DLL1O00548 723 aa6.27□□□□□ -1.41
CKS1BP3-201ENST00000600888 SOX1O00570 391 aaPredicted RBP6.27□□□□□ -1.41
CKS1BP3-201ENST00000600888 FSCN2O14926 492 aa6.27□□□□□ -1.41
CKS1BP3-201ENST00000600888 PRPF40AO75400 957 aaKnown RBP6.27□□□□□ -1.41
CKS1BP3-201ENST00000600888 ITPKAP23677 461 aa6.27□□□□□ -1.41
CKS1BP3-201ENST00000600888 FGD1P98174 961 aa6.27□□□□□ -1.41
CKS1BP3-201ENST00000600888 NXPE4Q6UWF7 544 aa6.27□□□□□ -1.41
CKS1BP3-201ENST00000600888 FBXO33Q7Z6M2 555 aa6.27□□□□□ -1.41
CKS1BP3-201ENST00000600888 GALNT11Q8NCW6 608 aa6.27□□□□□ -1.41
CKS1BP3-201ENST00000600888 ABCB6Q9NP58 842 aa6.27□□□□□ -1.41
CKS1BP3-201ENST00000600888 LAMC3Q9Y6N6 1575 aa6.27□□□□□ -1.41
CKS1BP3-201ENST00000600888 TM4SF5O14894 197 aa6.26□□□□□ -1.41
CKS1BP3-201ENST00000600888 GIPC1O14908 333 aa6.26□□□□□ -1.41
CKS1BP3-201ENST00000600888 APBA3O96018 575 aa6.26□□□□□ -1.41
CKS1BP3-201ENST00000600888 SELPP16109 830 aa6.26□□□□□ -1.41
CKS1BP3-201ENST00000600888 PIP4K2BP78356 416 aa6.26□□□□□ -1.41
CKS1BP3-201ENST00000600888 PTPN12Q05209 780 aaKnown RBP6.26□□□□□ -1.41
CKS1BP3-201ENST00000600888 IKBKEQ14164 716 aa6.26□□□□□ -1.41
CKS1BP3-201ENST00000600888 IGF2-ASQ6U949 168 aa6.26□□□□□ -1.41
CKS1BP3-201ENST00000600888 KLHL23Q8NBE8 558 aa6.26□□□□□ -1.41
CKS1BP3-201ENST00000600888 WNT8BQ93098 351 aa6.26□□□□□ -1.41
CKS1BP3-201ENST00000600888 CARD10Q9BWT7 1032 aa6.26□□□□□ -1.41
CKS1BP3-201ENST00000600888 OSBPL7Q9BZF2 842 aa6.26□□□□□ -1.41
CKS1BP3-201ENST00000600888 CLEC4MQ9H2X3 399 aaPredicted RBP6.26□□□□□ -1.41
CKS1BP3-201ENST00000600888 OSGEPQ9NPF4 335 aa6.26□□□□□ -1.41
CKS1BP3-201ENST00000600888 SEC31BQ9NQW1 1179 aa6.26□□□□□ -1.41
CKS1BP3-201ENST00000600888 C9orf172C9J069 976 aa6.25□□□□□ -1.41
CKS1BP3-201ENST00000600888 ESRRAP11474 423 aaPredicted RBP6.25□□□□□ -1.41
CKS1BP3-201ENST00000600888 CD68P34810 354 aaPredicted RBP6.25□□□□□ -1.41
CKS1BP3-201ENST00000600888 PCDH1Q08174 1060 aa6.25□□□□□ -1.41
CKS1BP3-201ENST00000600888 ZNF423Q2M1K9 1284 aa6.25□□□□□ -1.41
CKS1BP3-201ENST00000600888 HGSNATQ68CP4 663 aa6.25□□□□□ -1.41
CKS1BP3-201ENST00000600888 SHISA2Q6UWI4 295 aa6.25□□□□□ -1.41
CKS1BP3-201ENST00000600888 CD163Q86VB7 1156 aa6.25□□□□□ -1.41
CKS1BP3-201ENST00000600888 DCAF11Q8TEB1 546 aa6.25□□□□□ -1.41
CKS1BP3-201ENST00000600888 SLC7A3Q8WY07 619 aa6.25□□□□□ -1.41
CKS1BP3-201ENST00000600888 LENG1Q96BZ8 264 aaPredicted RBP6.25□□□□□ -1.41
CKS1BP3-201ENST00000600888 KLHDC7BQ96G42 594 aa6.25□□□□□ -1.41
CKS1BP3-201ENST00000600888 FRMD6Q96NE9 622 aa6.25□□□□□ -1.41
CKS1BP3-201ENST00000600888 NACC1Q96RE7 527 aa6.25□□□□□ -1.41
CKS1BP3-201ENST00000600888 DUSP9Q99956 384 aaKnown RBP6.25□□□□□ -1.41
CKS1BP3-201ENST00000600888 RNF19AQ9NV58 838 aa6.25□□□□□ -1.41
CKS1BP3-201ENST00000600888 SPG7Q9UQ90 795 aa6.25□□□□□ -1.41
CKS1BP3-201ENST00000600888 CUX2O14529 1486 aa6.24□□□□□ -1.41
CKS1BP3-201ENST00000600888 C1QTNF9BB2RNN3 333 aa6.24□□□□□ -1.41
CKS1BP3-201ENST00000600888 CHRNA4P43681 627 aa6.24□□□□□ -1.41
CKS1BP3-201ENST00000600888 ARL4DP49703 201 aa6.24□□□□□ -1.41
CKS1BP3-201ENST00000600888 FCGRTP55899 365 aa6.24□□□□□ -1.41
CKS1BP3-201ENST00000600888 TAGLNQ01995 201 aaKnown RBP6.24□□□□□ -1.41
CKS1BP3-201ENST00000600888 SUZ12Q15022 739 aaKnown RBP6.24□□□□□ -1.41
CKS1BP3-201ENST00000600888 PLA2G4EQ3MJ16 856 aa6.24□□□□□ -1.41
CKS1BP3-201ENST00000600888 SRCIN1Q9C0H9 1055 aa6.24□□□□□ -1.41
CKS1BP3-201ENST00000600888 ZNF576Q9H609 170 aa6.24□□□□□ -1.41
CKS1BP3-201ENST00000600888 ZFYVE1Q9HBF4 777 aa6.24□□□□□ -1.41
CKS1BP3-201ENST00000600888 KCNK4Q9NYG8 393 aa6.24□□□□□ -1.41
CKS1BP3-201ENST00000600888 DDX3YO15523 660 aaKnown RBP6.23□□□□□ -1.41
CKS1BP3-201ENST00000600888 ITGB2P05107 769 aa6.23□□□□□ -1.41
CKS1BP3-201ENST00000600888 XRCC5P13010 732 aaKnown RBP6.23□□□□□ -1.41
CKS1BP3-201ENST00000600888 GNA15P30679 374 aa6.23□□□□□ -1.41
CKS1BP3-201ENST00000600888 C19orf57Q0VDD7 668 aa6.23□□□□□ -1.41
CKS1BP3-201ENST00000600888 FOXD4L6Q3SYB3 417 aaPredicted RBP6.23□□□□□ -1.41
CKS1BP3-201ENST00000600888 RPS26P11Q5JNZ5 115 aaPredicted RBP6.23□□□□□ -1.41
CKS1BP3-201ENST00000600888 FOXD4L3Q6VB84 417 aaPredicted RBP6.23□□□□□ -1.41
CKS1BP3-201ENST00000600888 DTHD1Q6ZMT9 781 aa6.23□□□□□ -1.41
CKS1BP3-201ENST00000600888 SOX17Q9H6I2 414 aaPredicted RBP6.23□□□□□ -1.41
CKS1BP3-201ENST00000600888 C12orf49Q9H741 205 aa6.23□□□□□ -1.41
CKS1BP3-201ENST00000600888 NESP48681 1621 aa6.23□□□□□ -1.41
CKS1BP3-201ENST00000600888 ERCC6Q03468 1493 aa6.22□□□□□ -1.41
CKS1BP3-201ENST00000600888 NRG1Q02297 640 aaPredicted RBP6.22□□□□□ -1.41
CKS1BP3-201ENST00000600888 BCL2L13Q9BXK5 485 aa6.22□□□□□ -1.41
CKS1BP3-201ENST00000600888 MRPL18Q9H0U6 180 aaKnown RBP6.22□□□□□ -1.41
CKS1BP3-201ENST00000600888 PARP2Q9UGN5 583 aa6.22□□□□□ -1.41
CKS1BP3-201ENST00000600888 USP21Q9UK80 565 aa6.22□□□□□ -1.41
CKS1BP3-201ENST00000600888 AKAP2Q9Y2D5 859 aa6.22□□□□□ -1.41
CKS1BP3-201ENST00000600888 AK5Q9Y6K8 562 aa6.22□□□□□ -1.41
CKS1BP3-201ENST00000600888 RSF1Q96T23 1441 aaPredicted RBP6.22□□□□□ -1.41
CKS1BP3-201ENST00000600888 KIF21AQ7Z4S6 1674 aa6.21□□□□□ -1.42
CKS1BP3-201ENST00000600888 ADAM11O75078 769 aa6.21□□□□□ -1.42
CKS1BP3-201ENST00000600888 B3GALT4O96024 378 aa6.21□□□□□ -1.42
CKS1BP3-201ENST00000600888 GSTT1P30711 240 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms