RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 ATL3Q6DD88 541 aa23.67■■□□□ 1.38
SHKBP1-225ENST00000600733 RAB11FIP4Q86YS3 637 aa23.67■■□□□ 1.38
SHKBP1-225ENST00000600733 CCDC144CPQ8IYA2 1237 aa23.67■■□□□ 1.38
SHKBP1-225ENST00000600733 TAF7LQ5H9L4 462 aa23.66■■□□□ 1.38
SHKBP1-225ENST00000600733 SYNE4Q8N205 404 aa23.66■■□□□ 1.38
SHKBP1-225ENST00000600733 STRN4Q9NRL3 753 aa23.66■■□□□ 1.38
SHKBP1-225ENST00000600733 CTNNA3Q9UI47 895 aa23.66■■□□□ 1.38
SHKBP1-225ENST00000600733 SHANK3Q9BYB0 1731 aa23.66■■□□□ 1.38
SHKBP1-225ENST00000600733 FBXL16Q8N461 479 aa23.66■■□□□ 1.38
SHKBP1-225ENST00000600733 RIOK3O14730 519 aaKnown RBP23.65■■□□□ 1.38
SHKBP1-225ENST00000600733 PRC1O43663 620 aa23.65■■□□□ 1.38
SHKBP1-225ENST00000600733 CHAF1AQ13111 956 aaPredicted RBP23.65■■□□□ 1.38
SHKBP1-225ENST00000600733 LRRFIP1Q32MZ4 808 aaKnown RBP23.65■■□□□ 1.38
SHKBP1-225ENST00000600733 CACTINQ8WUQ7 758 aaKnown RBP23.65■■□□□ 1.38
SHKBP1-225ENST00000600733 PCDHA7Q9UN72 937 aa23.65■■□□□ 1.38
SHKBP1-225ENST00000600733 KLF18A0A0U1RQI7 1052 aa23.64■■□□□ 1.38
SHKBP1-225ENST00000600733 ZFYP08048 801 aaPredicted RBP23.64■■□□□ 1.38
SHKBP1-225ENST00000600733 MB21D2Q8IYB1 491 aaPredicted RBP23.64■■□□□ 1.37
SHKBP1-225ENST00000600733 APPBP2Q92624 585 aa23.64■■□□□ 1.37
SHKBP1-225ENST00000600733 GJB4Q9NTQ9 266 aa23.64■■□□□ 1.37
SHKBP1-225ENST00000600733 HPS5Q9UPZ3 1129 aa23.64■■□□□ 1.37
SHKBP1-225ENST00000600733 GOLGA8BA8MQT2 603 aa23.63■■□□□ 1.37
SHKBP1-225ENST00000600733 POLR3DP05423 398 aaPredicted RBP23.63■■□□□ 1.37
SHKBP1-225ENST00000600733 ANTXR2P58335 489 aa23.63■■□□□ 1.37
SHKBP1-225ENST00000600733 IFIT5Q13325 482 aaKnown RBP23.63■■□□□ 1.37
SHKBP1-225ENST00000600733 CARD10Q9BWT7 1032 aa23.63■■□□□ 1.37
SHKBP1-225ENST00000600733 PCCAP05165 728 aaPredicted RBP23.63■■□□□ 1.37
SHKBP1-225ENST00000600733 DNAJC10Q8IXB1 793 aa23.63■■□□□ 1.37
SHKBP1-225ENST00000600733 FBXW7Q969H0 707 aa23.63■■□□□ 1.37
SHKBP1-225ENST00000600733 C16orf45Q96MC5 204 aaPredicted RBP23.63■■□□□ 1.37
SHKBP1-225ENST00000600733 TMOD3Q9NYL9 352 aa23.63■■□□□ 1.37
SHKBP1-225ENST00000600733 A0A1B0GVL5 298 aa23.62■■□□□ 1.37
SHKBP1-225ENST00000600733 SARM1Q6SZW1 724 aa23.62■■□□□ 1.37
SHKBP1-225ENST00000600733 DHX40Q8IX18 779 aaKnown RBP23.62■■□□□ 1.37
SHKBP1-225ENST00000600733 C8orf76Q96K31 380 aa23.62■■□□□ 1.37
SHKBP1-225ENST00000600733 BCL2L12Q9HB09 334 aa23.62■■□□□ 1.37
SHKBP1-225ENST00000600733 RTEL1Q9NZ71 1219 aa23.62■■□□□ 1.37
SHKBP1-225ENST00000600733 FBXO3Q9UK99 471 aa23.62■■□□□ 1.37
SHKBP1-225ENST00000600733 ASAP1Q9ULH1 1129 aa23.62■■□□□ 1.37
SHKBP1-225ENST00000600733 CLIC4Q9Y696 253 aa23.62■■□□□ 1.37
SHKBP1-225ENST00000600733 TOGARAM1Q9Y4F4 1720 aa23.62■■□□□ 1.37
SHKBP1-225ENST00000600733 GPAA1O43292 621 aa23.62■■□□□ 1.37
SHKBP1-225ENST00000600733 CDC25BP30305 580 aa23.62■■□□□ 1.37
SHKBP1-225ENST00000600733 TRIM28Q13263 835 aaKnown RBP23.62■■□□□ 1.37
SHKBP1-225ENST00000600733 MRPS27Q92552 414 aaKnown RBP23.62■■□□□ 1.37
SHKBP1-225ENST00000600733 CHMP4CQ96CF2 233 aa23.62■■□□□ 1.37
SHKBP1-225ENST00000600733 RIC1Q4ADV7 1423 aa23.61■■□□□ 1.37
SHKBP1-225ENST00000600733 BECN2A8MW95 431 aa23.61■■□□□ 1.37
SHKBP1-225ENST00000600733 CSF1RP07333 972 aa23.61■■□□□ 1.37
SHKBP1-225ENST00000600733 KIF6Q6ZMV9 814 aa23.61■■□□□ 1.37
SHKBP1-225ENST00000600733 FMR1NBQ8N0W7 255 aaPredicted RBP23.61■■□□□ 1.37
SHKBP1-225ENST00000600733 ZBTB38Q8NAP3 1195 aaPredicted RBP23.61■■□□□ 1.37
SHKBP1-225ENST00000600733 ORC3Q9UBD5 711 aaPredicted RBP23.61■■□□□ 1.37
SHKBP1-225ENST00000600733 MCAMP43121 646 aa23.61■■□□□ 1.37
SHKBP1-225ENST00000600733 ARID5BQ14865 1188 aa23.61■■□□□ 1.37
SHKBP1-225ENST00000600733 ATP2B3Q16720 1220 aa23.61■■□□□ 1.37
SHKBP1-225ENST00000600733 LINC00301Q8NCQ3 95 aa23.61■■□□□ 1.37
SHKBP1-225ENST00000600733 NCOA7Q8NI08 942 aa23.61■■□□□ 1.37
SHKBP1-225ENST00000600733 ANO10Q9NW15 660 aa23.61■■□□□ 1.37
SHKBP1-225ENST00000600733 MYH7P12883 1935 aa23.6■■□□□ 1.37
SHKBP1-225ENST00000600733 GPTP24298 496 aa23.6■■□□□ 1.37
SHKBP1-225ENST00000600733 NDUFA8P51970 172 aa23.6■■□□□ 1.37
SHKBP1-225ENST00000600733 METTL24Q5JXM2 366 aa23.6■■□□□ 1.37
SHKBP1-225ENST00000600733 ADALQ6DHV7 355 aa23.6■■□□□ 1.37
SHKBP1-225ENST00000600733 RALYLQ86SE5 291 aaKnown RBP23.6■■□□□ 1.37
SHKBP1-225ENST00000600733 FBXO18Q8NFZ0 1043 aa23.6■■□□□ 1.37
SHKBP1-225ENST00000600733 PLA2G12BQ9BX93 195 aa23.6■■□□□ 1.37
SHKBP1-225ENST00000600733 DENND2AQ9ULE3 1009 aa23.6■■□□□ 1.37
SHKBP1-225ENST00000600733 ZNF213O14771 459 aa23.59■■□□□ 1.37
SHKBP1-225ENST00000600733 STK38Q15208 465 aa23.59■■□□□ 1.37
SHKBP1-225ENST00000600733 MRFAP1L1Q96HT8 127 aa23.59■■□□□ 1.37
SHKBP1-225ENST00000600733 SDF4Q9BRK5 362 aa23.59■■□□□ 1.37
SHKBP1-225ENST00000600733 XIRP1Q702N8 1843 aaKnown RBP23.59■■□□□ 1.37
SHKBP1-225ENST00000600733 CPLX1O14810 134 aa23.58■■□□□ 1.37
SHKBP1-225ENST00000600733 DHX16O60231 1041 aaKnown RBP23.58■■□□□ 1.37
SHKBP1-225ENST00000600733 HSPA2P54652 639 aa23.58■■□□□ 1.37
SHKBP1-225ENST00000600733 SF3A1Q15459 793 aaKnown RBP23.58■■□□□ 1.37
SHKBP1-225ENST00000600733 HLFQ16534 295 aa23.58■■□□□ 1.37
SHKBP1-225ENST00000600733 NKX2-3Q8TAU0 364 aa23.58■■□□□ 1.37
SHKBP1-225ENST00000600733 ZMYND15Q9H091 742 aa23.58■■□□□ 1.37
SHKBP1-225ENST00000600733 GREM2Q9H772 168 aa23.58■■□□□ 1.37
SHKBP1-225ENST00000600733 RIPOR2Q9Y4F9 1068 aa23.58■■□□□ 1.37
SHKBP1-225ENST00000600733 ITGA6P23229 1130 aa23.58■■□□□ 1.36
SHKBP1-225ENST00000600733 LDHAL6AQ6ZMR3 332 aa23.58■■□□□ 1.36
SHKBP1-225ENST00000600733 LRRC8AQ8IWT6 810 aa23.58■■□□□ 1.36
SHKBP1-225ENST00000600733 AOPEPQ8N6M6 819 aa23.58■■□□□ 1.36
SHKBP1-225ENST00000600733 NBPF3Q9H094 633 aa23.58■■□□□ 1.36
SHKBP1-225ENST00000600733 KIF28PB7ZC32 967 aa23.57■■□□□ 1.36
SHKBP1-225ENST00000600733 EVA1CP58658 441 aa23.57■■□□□ 1.36
SHKBP1-225ENST00000600733 CEP57L1Q8IYX8 460 aa23.57■■□□□ 1.36
SHKBP1-225ENST00000600733 PIGBQ92521 554 aa23.57■■□□□ 1.36
SHKBP1-225ENST00000600733 AKAP11Q9UKA4 1901 aa23.57■■□□□ 1.36
SHKBP1-225ENST00000600733 DDX60Q8IY21 1712 aaKnown RBP23.57■■□□□ 1.36
SHKBP1-225ENST00000600733 A0A1W2PQ27 194 aa23.57■■□□□ 1.36
SHKBP1-225ENST00000600733 A0A1W2PQ64 194 aa23.57■■□□□ 1.36
SHKBP1-225ENST00000600733 A0A1W2PQD8 194 aa23.57■■□□□ 1.36
SHKBP1-225ENST00000600733 MYSM1Q5VVJ2 828 aa23.57■■□□□ 1.36
SHKBP1-225ENST00000600733 POLR3EQ9NVU0 708 aa23.56■■□□□ 1.36
SHKBP1-225ENST00000600733 ABCC12Q96J65 1359 aa23.56■■□□□ 1.36
SHKBP1-225ENST00000600733 SLC9C2Q5TAH2 1124 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms