RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 CRBNQ96SW2 442 aa31.78■■■□□ 2.68
TRIM28-204ENST00000594806 ADAMTSL1Q8N6G6 1762 aa31.77■■■□□ 2.68
TRIM28-204ENST00000594806 CHADLQ6NUI6 762 aa31.77■■■□□ 2.68
TRIM28-204ENST00000594806 OGFOD1Q8N543 542 aa31.77■■■□□ 2.68
TRIM28-204ENST00000594806 SEMA3EO15041 775 aa31.76■■■□□ 2.67
TRIM28-204ENST00000594806 ZC3H15Q8WU90 426 aaKnown RBP31.76■■■□□ 2.67
TRIM28-204ENST00000594806 TBC1D22AQ8WUA7 517 aa31.76■■■□□ 2.67
TRIM28-204ENST00000594806 XAGE2Q96GT9 111 aa31.76■■■□□ 2.67
TRIM28-204ENST00000594806 MYH13Q9UKX3 1938 aa31.75■■■□□ 2.67
TRIM28-204ENST00000594806 RAB11FIP3O75154 756 aa31.75■■■□□ 2.67
TRIM28-204ENST00000594806 NEUROD6Q96NK8 337 aa31.75■■■□□ 2.67
TRIM28-204ENST00000594806 HDAC9Q9UKV0 1011 aa31.75■■■□□ 2.67
TRIM28-204ENST00000594806 CLEC11AQ9Y240 323 aa31.75■■■□□ 2.67
TRIM28-204ENST00000594806 EXOC6BQ9Y2D4 811 aa31.75■■■□□ 2.67
TRIM28-204ENST00000594806 TNNI3KQ59H18 835 aa31.74■■■□□ 2.67
TRIM28-204ENST00000594806 FPGT-TNNI3KV9GXZ4 949 aa31.74■■■□□ 2.67
TRIM28-204ENST00000594806 CCDC102BQ68D86 513 aa31.73■■■□□ 2.67
TRIM28-204ENST00000594806 MXD3Q9BW11 206 aa31.73■■■□□ 2.67
TRIM28-204ENST00000594806 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP31.73■■■□□ 2.67
TRIM28-204ENST00000594806 SHTN1A0MZ66 631 aa31.72■■■□□ 2.67
TRIM28-204ENST00000594806 POTEIP0CG38 1075 aa31.72■■■□□ 2.67
TRIM28-204ENST00000594806 POTEJP0CG39 1038 aa31.72■■■□□ 2.67
TRIM28-204ENST00000594806 ADORA1P30542 326 aa31.72■■■□□ 2.67
TRIM28-204ENST00000594806 MFSD14BQ5SR56 506 aa31.72■■■□□ 2.67
TRIM28-204ENST00000594806 KIF1BPQ96EK5 621 aa31.72■■■□□ 2.67
TRIM28-204ENST00000594806 PGAP2Q9UHJ9 254 aa31.72■■■□□ 2.67
TRIM28-204ENST00000594806 DENND2AQ9ULE3 1009 aa31.72■■■□□ 2.67
TRIM28-204ENST00000594806 IQSEC3Q9UPP2 1182 aaPredicted RBP31.72■■■□□ 2.67
TRIM28-204ENST00000594806 GORABQ5T7V8 394 aa31.71■■■□□ 2.67
TRIM28-204ENST00000594806 SAMD7Q7Z3H4 446 aa31.71■■■□□ 2.67
TRIM28-204ENST00000594806 CERS5Q8N5B7 392 aa31.71■■■□□ 2.67
TRIM28-204ENST00000594806 WDR66Q8TBY9 1149 aa31.71■■■□□ 2.67
TRIM28-204ENST00000594806 SUGT1Q9Y2Z0 365 aa31.71■■■□□ 2.67
TRIM28-204ENST00000594806 PHKA1P46020 1223 aa31.7■■■□□ 2.67
TRIM28-204ENST00000594806 KIF4BQ2VIQ3 1234 aa31.7■■■□□ 2.67
TRIM28-204ENST00000594806 KIAA0825Q8IV33 1275 aa31.7■■■□□ 2.67
TRIM28-204ENST00000594806 RHPN1Q8TCX5 695 aa31.7■■■□□ 2.67
TRIM28-204ENST00000594806 TRPM4Q8TD43 1214 aa31.7■■■□□ 2.67
TRIM28-204ENST00000594806 MYOZ2Q9NPC6 264 aa31.7■■■□□ 2.67
TRIM28-204ENST00000594806 HIRAP54198 1017 aaPredicted RBP31.69■■■□□ 2.66
TRIM28-204ENST00000594806 CHAF1AQ13111 956 aaPredicted RBP31.69■■■□□ 2.66
TRIM28-204ENST00000594806 TBC1D10BQ4KMP7 808 aaPredicted RBP31.69■■■□□ 2.66
TRIM28-204ENST00000594806 PDS5AQ29RF7 1337 aaKnown RBP31.69■■■□□ 2.66
TRIM28-204ENST00000594806 JAG2Q9Y219 1238 aa31.68■■■□□ 2.66
TRIM28-204ENST00000594806 RBM26Q5T8P6 1007 aaKnown RBP31.67■■■□□ 2.66
TRIM28-204ENST00000594806 PCDHB15Q9Y5E8 787 aa31.67■■■□□ 2.66
TRIM28-204ENST00000594806 UQCRFS1P1P0C7P4 283 aa31.66■■■□□ 2.66
TRIM28-204ENST00000594806 CCDC158Q5M9N0 1113 aa31.66■■■□□ 2.66
TRIM28-204ENST00000594806 CNTROBQ8N137 903 aa31.66■■■□□ 2.66
TRIM28-204ENST00000594806 CLASRPQ8N2M8 674 aaKnown RBP31.66■■■□□ 2.66
TRIM28-204ENST00000594806 DCTPP1Q9H773 170 aa31.66■■■□□ 2.66
TRIM28-204ENST00000594806 EAF2Q96CJ1 260 aaPredicted RBP31.65■■■□□ 2.66
TRIM28-204ENST00000594806 ARID4AP29374 1257 aaPredicted RBP31.64■■■□□ 2.66
TRIM28-204ENST00000594806 ZGPATQ8N5A5 531 aaKnown RBP31.64■■■□□ 2.66
TRIM28-204ENST00000594806 MTMR14Q8NCE2 650 aa31.64■■■□□ 2.66
TRIM28-204ENST00000594806 SALL1Q9NSC2 1324 aa31.64■■■□□ 2.66
TRIM28-204ENST00000594806 EGFRP00533 1210 aa31.63■■■□□ 2.65
TRIM28-204ENST00000594806 MAP1SQ66K74 1059 aaPredicted RBP31.63■■■□□ 2.65
TRIM28-204ENST00000594806 ZNF512BQ96KM6 892 aaPredicted RBP31.63■■■□□ 2.65
TRIM28-204ENST00000594806 MAST3O60307 1309 aa31.63■■■□□ 2.65
TRIM28-204ENST00000594806 HDLBPQ00341 1268 aaKnown RBP31.62■■■□□ 2.65
TRIM28-204ENST00000594806 RASGRF1Q13972 1273 aa31.62■■■□□ 2.65
TRIM28-204ENST00000594806 DBNDD2Q9BQY9 259 aa31.62■■■□□ 2.65
TRIM28-204ENST00000594806 MRIQ9BWK5 157 aa31.62■■■□□ 2.65
TRIM28-204ENST00000594806 TTF2Q9UNY4 1162 aaKnown RBP31.62■■■□□ 2.65
TRIM28-204ENST00000594806 F8W031 263 aaPredicted RBP31.61■■■□□ 2.65
TRIM28-204ENST00000594806 ITGBL1O95965 494 aaPredicted RBP31.61■■■□□ 2.65
TRIM28-204ENST00000594806 SCARF1Q14162 830 aa31.61■■■□□ 2.65
TRIM28-204ENST00000594806 AACSQ86V21 672 aa31.61■■■□□ 2.65
TRIM28-204ENST00000594806 DCPSQ96C86 337 aaKnown RBP31.61■■■□□ 2.65
TRIM28-204ENST00000594806 LRRCC1Q9C099 1032 aa31.61■■■□□ 2.65
TRIM28-204ENST00000594806 DBNLQ9UJU6 430 aaKnown RBP31.61■■■□□ 2.65
TRIM28-204ENST00000594806 SERPINA10Q9UK55 444 aa31.61■■■□□ 2.65
TRIM28-204ENST00000594806 COL1A1P02452 1464 aaPredicted RBP31.6■■■□□ 2.65
TRIM28-204ENST00000594806 POLR2AP24928 1970 aaKnown RBP31.6■■■□□ 2.65
TRIM28-204ENST00000594806 HSPA6P17066 643 aa31.6■■■□□ 2.65
TRIM28-204ENST00000594806 DLGAP5Q15398 846 aa31.6■■■□□ 2.65
TRIM28-204ENST00000594806 TTC39AQ5SRH9 613 aa31.6■■■□□ 2.65
TRIM28-204ENST00000594806 CDC37L1Q7L3B6 337 aa31.6■■■□□ 2.65
TRIM28-204ENST00000594806 ZBED3Q96IU2 234 aaPredicted RBP31.6■■■□□ 2.65
TRIM28-204ENST00000594806 CCDC8Q9H0W5 538 aaPredicted RBP31.6■■■□□ 2.65
TRIM28-204ENST00000594806 IL1RAPL2Q9NP60 686 aa31.6■■■□□ 2.65
TRIM28-204ENST00000594806 PITPNM2Q9BZ72 1349 aa31.59■■■□□ 2.65
TRIM28-204ENST00000594806 WNT10BO00744 389 aa31.59■■■□□ 2.65
TRIM28-204ENST00000594806 EXOC6Q8TAG9 804 aa31.59■■■□□ 2.65
TRIM28-204ENST00000594806 PASKQ96RG2 1323 aa31.58■■■□□ 2.65
TRIM28-204ENST00000594806 APBB1O00213 710 aa31.58■■■□□ 2.65
TRIM28-204ENST00000594806 HDAC1Q13547 482 aaPredicted RBP31.58■■■□□ 2.65
TRIM28-204ENST00000594806 SPATA5Q8NB90 893 aa31.58■■■□□ 2.65
TRIM28-204ENST00000594806 CFAP100Q494V2 611 aa31.57■■■□□ 2.64
TRIM28-204ENST00000594806 SPTY2D1Q68D10 685 aaPredicted RBP31.57■■■□□ 2.64
TRIM28-204ENST00000594806 HMG20BQ9P0W2 317 aa31.57■■■□□ 2.64
TRIM28-204ENST00000594806 IFIT2P09913 472 aaKnown RBP31.56■■■□□ 2.64
TRIM28-204ENST00000594806 MYO1BO43795 1136 aa31.55■■■□□ 2.64
TRIM28-204ENST00000594806 LDHBP07195 334 aaKnown RBP31.55■■■□□ 2.64
TRIM28-204ENST00000594806 APLP1P51693 650 aa31.55■■■□□ 2.64
TRIM28-204ENST00000594806 NBPF9Q3BBW0 867 aa31.55■■■□□ 2.64
TRIM28-204ENST00000594806 GGA3Q9NZ52 723 aa31.55■■■□□ 2.64
TRIM28-204ENST00000594806 ECM29Q5VYK3 1845 aa31.54■■■□□ 2.64
TRIM28-204ENST00000594806 SPDYE2BA6NHP3 402 aa31.54■■■□□ 2.64
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms