RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 FOXO4P98177 505 aa22.45■■□□□ 1.18
CLK3-221ENST00000568139 LAMB1P07942 1786 aa22.45■■□□□ 1.18
CLK3-221ENST00000568139 VAMP4O75379 141 aa22.44■■□□□ 1.18
CLK3-221ENST00000568139 ALDH1A1P00352 501 aa22.44■■□□□ 1.18
CLK3-221ENST00000568139 IL1R1P14778 569 aa22.44■■□□□ 1.18
CLK3-221ENST00000568139 INHBEP58166 350 aa22.44■■□□□ 1.18
CLK3-221ENST00000568139 PRPF38BQ5VTL8 546 aaKnown RBP22.44■■□□□ 1.18
CLK3-221ENST00000568139 HELBQ8NG08 1087 aaPredicted RBP22.44■■□□□ 1.18
CLK3-221ENST00000568139 FZD1Q9UP38 647 aa22.44■■□□□ 1.18
CLK3-221ENST00000568139 PPP2R3BQ9Y5P8 575 aa22.44■■□□□ 1.18
CLK3-221ENST00000568139 FKBP1AP62942 108 aaKnown RBP22.43■■□□□ 1.18
CLK3-221ENST00000568139 IFIT5Q13325 482 aaKnown RBP22.43■■□□□ 1.18
CLK3-221ENST00000568139 SLC10A4Q96EP9 437 aa22.43■■□□□ 1.18
CLK3-221ENST00000568139 PCDHAC2Q9Y5I4 1007 aa22.43■■□□□ 1.18
CLK3-221ENST00000568139 SSC5DA1L4H1 1573 aa22.42■■□□□ 1.18
CLK3-221ENST00000568139 FANCIQ9NVI1 1328 aa22.42■■□□□ 1.18
CLK3-221ENST00000568139 MANSC4A6NHS7 340 aaPredicted RBP22.42■■□□□ 1.18
CLK3-221ENST00000568139 UNCXA6NJT0 531 aa22.41■■□□□ 1.18
CLK3-221ENST00000568139 PPP1R12BO60237 982 aaPredicted RBP22.41■■□□□ 1.18
CLK3-221ENST00000568139 ZBTB48P10074 688 aaPredicted RBP22.41■■□□□ 1.18
CLK3-221ENST00000568139 CFAP100Q494V2 611 aa22.41■■□□□ 1.18
CLK3-221ENST00000568139 ZNF804AQ7Z570 1209 aa22.41■■□□□ 1.18
CLK3-221ENST00000568139 IFNL1Q8IU54 200 aa22.41■■□□□ 1.18
CLK3-221ENST00000568139 SPDYE2BA6NHP3 402 aa22.4■■□□□ 1.18
CLK3-221ENST00000568139 SPDYE6P0CI01 402 aa22.4■■□□□ 1.18
CLK3-221ENST00000568139 BEND3Q5T5X7 828 aa22.4■■□□□ 1.18
CLK3-221ENST00000568139 WNK4Q96J92 1243 aa22.4■■□□□ 1.18
CLK3-221ENST00000568139 PRMT6Q96LA8 375 aaPredicted RBP22.4■■□□□ 1.18
CLK3-221ENST00000568139 F8W031 263 aaPredicted RBP22.39■■□□□ 1.17
CLK3-221ENST00000568139 MYO1BO43795 1136 aa22.39■■□□□ 1.17
CLK3-221ENST00000568139 SUPT20HL1Q3ZLR7 823 aa22.39■■□□□ 1.17
CLK3-221ENST00000568139 CLMNQ96JQ2 1002 aa22.39■■□□□ 1.17
CLK3-221ENST00000568139 CLRN2A0PK11 232 aa22.38■■□□□ 1.17
CLK3-221ENST00000568139 F6X3S4 739 aa22.38■■□□□ 1.17
CLK3-221ENST00000568139 LMBR1LQ6UX01 489 aa22.38■■□□□ 1.17
CLK3-221ENST00000568139 WDR63Q8IWG1 891 aa22.38■■□□□ 1.17
CLK3-221ENST00000568139 CHMP3Q9Y3E7 222 aa22.38■■□□□ 1.17
CLK3-221ENST00000568139 AOX1Q06278 1338 aa22.37■■□□□ 1.17
CLK3-221ENST00000568139 IGF2BP3O00425 579 aaKnown RBP eCLIP22.37■■□□□ 1.17
CLK3-221ENST00000568139 EXOSC9Q06265 439 aaKnown RBP22.37■■□□□ 1.17
CLK3-221ENST00000568139 EPHA10Q5JZY3 1008 aa22.37■■□□□ 1.17
CLK3-221ENST00000568139 NBPF12Q5TAG4 269 aaPredicted RBP22.37■■□□□ 1.17
CLK3-221ENST00000568139 USP2O75604 605 aaPredicted RBP22.36■■□□□ 1.17
CLK3-221ENST00000568139 CCDC57Q2TAC2 916 aa22.36■■□□□ 1.17
CLK3-221ENST00000568139 LDHAL6AQ6ZMR3 332 aa22.36■■□□□ 1.17
CLK3-221ENST00000568139 ZNF594Q96JF6 807 aaPredicted RBP22.36■■□□□ 1.17
CLK3-221ENST00000568139 FAM205AQ6ZU69 1335 aa22.35■■□□□ 1.17
CLK3-221ENST00000568139 IREB2P48200 963 aaKnown RBP22.35■■□□□ 1.17
CLK3-221ENST00000568139 VEZTQ9HBM0 779 aa22.35■■□□□ 1.17
CLK3-221ENST00000568139 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.35■■□□□ 1.17
CLK3-221ENST00000568139 JAG2Q9Y219 1238 aa22.35■■□□□ 1.17
CLK3-221ENST00000568139 TRIM17Q9Y577 477 aa22.35■■□□□ 1.17
CLK3-221ENST00000568139 GRM8O00222 908 aa22.34■■□□□ 1.17
CLK3-221ENST00000568139 PLIN1O60240 522 aa22.34■■□□□ 1.17
CLK3-221ENST00000568139 GJA5P36382 358 aa22.34■■□□□ 1.17
CLK3-221ENST00000568139 RASA3Q14644 834 aa22.34■■□□□ 1.17
CLK3-221ENST00000568139 OTOP1Q7RTM1 612 aa22.34■■□□□ 1.17
CLK3-221ENST00000568139 RBM5P52756 815 aaKnown RBP eCLIP22.33■■□□□ 1.17
CLK3-221ENST00000568139 TAF7LQ5H9L4 462 aa22.33■■□□□ 1.17
CLK3-221ENST00000568139 ANKRD13AQ8IZ07 590 aa22.33■■□□□ 1.17
CLK3-221ENST00000568139 TDRD7Q8NHU6 1098 aaKnown RBP22.33■■□□□ 1.17
CLK3-221ENST00000568139 CNNM1Q9NRU3 951 aa22.33■■□□□ 1.17
CLK3-221ENST00000568139 TESPA1A2RU30 521 aaPredicted RBP22.32■■□□□ 1.16
CLK3-221ENST00000568139 UBE4AQ14139 1066 aa22.32■■□□□ 1.16
CLK3-221ENST00000568139 OTUD7BQ6GQQ9 843 aa22.32■■□□□ 1.16
CLK3-221ENST00000568139 OTOFQ9HC10 1997 aa22.32■■□□□ 1.16
CLK3-221ENST00000568139 TNFAIP1Q13829 316 aa22.31■■□□□ 1.16
CLK3-221ENST00000568139 SPDYE2Q495Y8 402 aa22.31■■□□□ 1.16
CLK3-221ENST00000568139 INTS3Q68E01 1043 aaKnown RBP22.31■■□□□ 1.16
CLK3-221ENST00000568139 ERO1AQ96HE7 468 aa22.31■■□□□ 1.16
CLK3-221ENST00000568139 PTPN18Q99952 460 aa22.31■■□□□ 1.16
CLK3-221ENST00000568139 ZNF70Q9UC06 446 aaPredicted RBP22.31■■□□□ 1.16
CLK3-221ENST00000568139 SERPINA10Q9UK55 444 aa22.31■■□□□ 1.16
CLK3-221ENST00000568139 SALL2Q9Y467 1007 aaPredicted RBP22.31■■□□□ 1.16
CLK3-221ENST00000568139 ALDH1L1O75891 902 aa22.3■■□□□ 1.16
CLK3-221ENST00000568139 CRHR2Q13324 411 aa22.3■■□□□ 1.16
CLK3-221ENST00000568139 MFSD14BQ5SR56 506 aa22.3■■□□□ 1.16
CLK3-221ENST00000568139 FAM84BQ96KN1 310 aaPredicted RBP22.3■■□□□ 1.16
CLK3-221ENST00000568139 SPINK5Q9NQ38 1064 aaPredicted RBP22.3■■□□□ 1.16
CLK3-221ENST00000568139 C9orf78Q9NZ63 289 aaPredicted RBP22.3■■□□□ 1.16
CLK3-221ENST00000568139 TTF2Q9UNY4 1162 aaKnown RBP22.3■■□□□ 1.16
CLK3-221ENST00000568139 ARAP2Q8WZ64 1704 aa22.29■■□□□ 1.16
CLK3-221ENST00000568139 HIBADHP31937 336 aaKnown RBP22.29■■□□□ 1.16
CLK3-221ENST00000568139 TDRD3Q9H7E2 651 aaKnown RBP22.29■■□□□ 1.16
CLK3-221ENST00000568139 MRS2Q9HD23 443 aa22.29■■□□□ 1.16
CLK3-221ENST00000568139 PTPN22Q9Y2R2 807 aa22.29■■□□□ 1.16
CLK3-221ENST00000568139 HTTP42858 3142 aa22.29■■□□□ 1.16
CLK3-221ENST00000568139 RBBP6Q7Z6E9 1792 aaKnown RBP22.28■■□□□ 1.16
CLK3-221ENST00000568139 GYG1P46976 350 aa22.28■■□□□ 1.16
CLK3-221ENST00000568139 CD99L2Q8TCZ2 262 aa22.28■■□□□ 1.16
CLK3-221ENST00000568139 TEPSINQ96N21 525 aa22.28■■□□□ 1.16
CLK3-221ENST00000568139 KIAA0100Q14667 2235 aaKnown RBP22.28■■□□□ 1.16
CLK3-221ENST00000568139 POTEFA5A3E0 1075 aa22.27■■□□□ 1.16
CLK3-221ENST00000568139 DZIP1LQ8IYY4 767 aaKnown RBP22.27■■□□□ 1.16
CLK3-221ENST00000568139 OPTNQ96CV9 577 aa22.27■■□□□ 1.16
CLK3-221ENST00000568139 KAZALD1Q96I82 304 aa22.27■■□□□ 1.16
CLK3-221ENST00000568139 MS4A4AQ96JQ5 239 aa22.27■■□□□ 1.16
CLK3-221ENST00000568139 PUS3Q9BZE2 481 aaKnown RBP22.27■■□□□ 1.16
CLK3-221ENST00000568139 SP3Q02447 781 aa22.26■■□□□ 1.15
CLK3-221ENST00000568139 PPP1R3FQ6ZSY5 799 aaPredicted RBP22.26■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms