RNA–Protein interactions for RNA: ENST00000563416.3

LINC00254-201, long intergenic non-protein coding RNA 254, humanhuman

TSL 3 BASIC

Gene LINC00254, Length 662 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00254-201ENST00000563416 EIF4EBP3O60516 100 aaPredicted RBP8.59□□□□□ -1.03
LINC00254-201ENST00000563416 GATA4P43694 442 aa8.59□□□□□ -1.03
LINC00254-201ENST00000563416 IKBKEQ14164 716 aa8.59□□□□□ -1.03
LINC00254-201ENST00000563416 CCDC27Q2M243 656 aa8.59□□□□□ -1.03
LINC00254-201ENST00000563416 ALG1LQ6GMV1 187 aa8.59□□□□□ -1.03
LINC00254-201ENST00000563416 FBF1Q8TES7 1133 aa8.59□□□□□ -1.03
LINC00254-201ENST00000563416 TCF12Q99081 682 aa8.59□□□□□ -1.03
LINC00254-201ENST00000563416 SPOCK3Q9BQ16 436 aa8.59□□□□□ -1.03
LINC00254-201ENST00000563416 MRPL18Q9H0U6 180 aaKnown RBP8.59□□□□□ -1.03
LINC00254-201ENST00000563416 ITGB2P05107 769 aa8.58□□□□□ -1.04
LINC00254-201ENST00000563416 CD68P34810 354 aaPredicted RBP8.58□□□□□ -1.04
LINC00254-201ENST00000563416 FGD1P98174 961 aa8.58□□□□□ -1.04
LINC00254-201ENST00000563416 ADGRE1Q14246 886 aa8.58□□□□□ -1.04
LINC00254-201ENST00000563416 SLC7A3Q8WY07 619 aa8.58□□□□□ -1.04
LINC00254-201ENST00000563416 METTL12A8MUP2 240 aa8.57□□□□□ -1.04
LINC00254-201ENST00000563416 C19orf57Q0VDD7 668 aa8.57□□□□□ -1.04
LINC00254-201ENST00000563416 MBTPS1Q14703 1052 aa8.57□□□□□ -1.04
LINC00254-201ENST00000563416 COL19A1Q14993 1142 aa8.57□□□□□ -1.04
LINC00254-201ENST00000563416 SUZ12Q15022 739 aaKnown RBP8.57□□□□□ -1.04
LINC00254-201ENST00000563416 PRPF40BQ6NWY9 871 aaKnown RBP8.57□□□□□ -1.04
LINC00254-201ENST00000563416 VN1R5Q7Z5H4 357 aa8.57□□□□□ -1.04
LINC00254-201ENST00000563416 GALNT11Q8NCW6 608 aa8.57□□□□□ -1.04
LINC00254-201ENST00000563416 EPS8L3Q8TE67 593 aaKnown RBP8.57□□□□□ -1.04
LINC00254-201ENST00000563416 CARD10Q9BWT7 1032 aa8.57□□□□□ -1.04
LINC00254-201ENST00000563416 CLEC4MQ9H2X3 399 aaPredicted RBP8.57□□□□□ -1.04
LINC00254-201ENST00000563416 ANKRD33BA6NCL7 494 aa8.56□□□□□ -1.04
LINC00254-201ENST00000563416 GRIA4P48058 902 aa8.56□□□□□ -1.04
LINC00254-201ENST00000563416 TXNRD3Q86VQ6 643 aa8.56□□□□□ -1.04
LINC00254-201ENST00000563416 SOX17Q9H6I2 414 aaPredicted RBP8.56□□□□□ -1.04
LINC00254-201ENST00000563416 ZFYVE1Q9HBF4 777 aa8.56□□□□□ -1.04
LINC00254-201ENST00000563416 PROCP04070 461 aa8.55□□□□□ -1.04
LINC00254-201ENST00000563416 ESRRAP11474 423 aaPredicted RBP8.55□□□□□ -1.04
LINC00254-201ENST00000563416 ERCC3P19447 782 aa8.55□□□□□ -1.04
LINC00254-201ENST00000563416 ITPKAP23677 461 aa8.55□□□□□ -1.04
LINC00254-201ENST00000563416 PTPN12Q05209 780 aaKnown RBP8.55□□□□□ -1.04
LINC00254-201ENST00000563416 GRM2Q14416 872 aa8.55□□□□□ -1.04
LINC00254-201ENST00000563416 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.55□□□□□ -1.04
LINC00254-201ENST00000563416 DDX54Q8TDD1 881 aaKnown RBP8.55□□□□□ -1.04
LINC00254-201ENST00000563416 KLHDC7BQ96G42 594 aa8.55□□□□□ -1.04
LINC00254-201ENST00000563416 SOX1O00570 391 aaPredicted RBP8.54□□□□□ -1.04
LINC00254-201ENST00000563416 P4HBP07237 508 aaKnown RBP8.54□□□□□ -1.04
LINC00254-201ENST00000563416 PCDH1Q08174 1060 aa8.54□□□□□ -1.04
LINC00254-201ENST00000563416 SPRED3Q2MJR0 410 aa8.54□□□□□ -1.04
LINC00254-201ENST00000563416 FOXD4L6Q3SYB3 417 aaPredicted RBP8.54□□□□□ -1.04
LINC00254-201ENST00000563416 FOXD4L3Q6VB84 417 aaPredicted RBP8.54□□□□□ -1.04
LINC00254-201ENST00000563416 TMEM130Q8N3G9 435 aa8.54□□□□□ -1.04
LINC00254-201ENST00000563416 SRCIN1Q9C0H9 1055 aa8.54□□□□□ -1.04
LINC00254-201ENST00000563416 AKTIPQ9H8T0 292 aa8.54□□□□□ -1.04
LINC00254-201ENST00000563416 ABCB6Q9NP58 842 aa8.54□□□□□ -1.04
LINC00254-201ENST00000563416 TMEM238LA0A1B0GVL6 79 aa8.53□□□□□ -1.04
LINC00254-201ENST00000563416 GIPC1O14908 333 aa8.53□□□□□ -1.04
LINC00254-201ENST00000563416 LDHBP07195 334 aaKnown RBP8.53□□□□□ -1.04
LINC00254-201ENST00000563416 XRCC5P13010 732 aaKnown RBP8.53□□□□□ -1.04
LINC00254-201ENST00000563416 DUOXA2Q1HG44 320 aa8.53□□□□□ -1.04
LINC00254-201ENST00000563416 EAPPQ56P03 285 aaPredicted RBP8.53□□□□□ -1.04
LINC00254-201ENST00000563416 WFDC12Q8WWY7 111 aa8.53□□□□□ -1.04
LINC00254-201ENST00000563416 BCO2Q9BYV7 579 aa8.53□□□□□ -1.04
LINC00254-201ENST00000563416 ZNF576Q9H609 170 aa8.53□□□□□ -1.04
LINC00254-201ENST00000563416 SPG7Q9UQ90 795 aa8.53□□□□□ -1.04
LINC00254-201ENST00000563416 F8W735 103 aaPredicted RBP8.52□□□□□ -1.05
LINC00254-201ENST00000563416 NLRP12P59046 1061 aa8.52□□□□□ -1.05
LINC00254-201ENST00000563416 PI16Q6UXB8 463 aa8.52□□□□□ -1.05
LINC00254-201ENST00000563416 DTHD1Q6ZMT9 781 aa8.52□□□□□ -1.05
LINC00254-201ENST00000563416 ACAD11Q709F0 780 aa8.52□□□□□ -1.05
LINC00254-201ENST00000563416 FRMD6Q96NE9 622 aa8.52□□□□□ -1.05
LINC00254-201ENST00000563416 TM4SF5O14894 197 aa8.51□□□□□ -1.05
LINC00254-201ENST00000563416 IREB2P48200 963 aaKnown RBP8.51□□□□□ -1.05
LINC00254-201ENST00000563416 FCGRTP55899 365 aa8.51□□□□□ -1.05
LINC00254-201ENST00000563416 GSTM4Q03013 218 aa8.51□□□□□ -1.05
LINC00254-201ENST00000563416 RPS26P11Q5JNZ5 115 aaPredicted RBP8.51□□□□□ -1.05
LINC00254-201ENST00000563416 DNAJC14Q6Y2X3 702 aaPredicted RBP8.51□□□□□ -1.05
LINC00254-201ENST00000563416 ZC3HAV1Q7Z2W4 902 aaKnown RBP8.51□□□□□ -1.05
LINC00254-201ENST00000563416 GLIS3Q8NEA6 775 aa8.51□□□□□ -1.05
LINC00254-201ENST00000563416 KCNK4Q9NYG8 393 aa8.51□□□□□ -1.05
LINC00254-201ENST00000563416 DDX3YO15523 660 aaKnown RBP8.5□□□□□ -1.05
LINC00254-201ENST00000563416 PRPF40AO75400 957 aaKnown RBP8.5□□□□□ -1.05
LINC00254-201ENST00000563416 B3GALT4O96024 378 aa8.5□□□□□ -1.05
LINC00254-201ENST00000563416 NOS3P29474 1203 aa8.5□□□□□ -1.05
LINC00254-201ENST00000563416 TMCO4Q5TGY1 634 aa8.5□□□□□ -1.05
LINC00254-201ENST00000563416 NXPE4Q6UWF7 544 aa8.5□□□□□ -1.05
LINC00254-201ENST00000563416 FOXD4L4Q8WXT5 416 aaPredicted RBP8.5□□□□□ -1.05
LINC00254-201ENST00000563416 WWC3Q9ULE0 1092 aa8.5□□□□□ -1.05
LINC00254-201ENST00000563416 ADAM11O75078 769 aa8.49□□□□□ -1.05
LINC00254-201ENST00000563416 GSTT1P30711 240 aa8.49□□□□□ -1.05
LINC00254-201ENST00000563416 ZNF423Q2M1K9 1284 aa8.49□□□□□ -1.05
LINC00254-201ENST00000563416 NPAS4Q8IUM7 802 aa8.49□□□□□ -1.05
LINC00254-201ENST00000563416 SETDB2Q96T68 719 aa8.49□□□□□ -1.05
LINC00254-201ENST00000563416 CEP41Q9BYV8 373 aa8.49□□□□□ -1.05
LINC00254-201ENST00000563416 WISP1O95388 367 aa8.48□□□□□ -1.05
LINC00254-201ENST00000563416 CYP11A1P05108 521 aa8.48□□□□□ -1.05
LINC00254-201ENST00000563416 GLB1P16278 677 aa8.48□□□□□ -1.05
LINC00254-201ENST00000563416 DOC2BQ14184 412 aa8.48□□□□□ -1.05
LINC00254-201ENST00000563416 HP1BP3Q5SSJ5 553 aaPredicted RBP8.48□□□□□ -1.05
LINC00254-201ENST00000563416 HGSNATQ68CP4 663 aa8.48□□□□□ -1.05
LINC00254-201ENST00000563416 UBASH3BQ8TF42 649 aa8.48□□□□□ -1.05
LINC00254-201ENST00000563416 USP26Q9BXU7 913 aa8.48□□□□□ -1.05
LINC00254-201ENST00000563416 RNF208Q9H0X6 261 aa8.48□□□□□ -1.05
LINC00254-201ENST00000563416 ALX3O95076 343 aa8.47□□□□□ -1.05
LINC00254-201ENST00000563416 PPP2R3AQ06190 1150 aa8.47□□□□□ -1.05
LINC00254-201ENST00000563416 AGGF1Q8N302 714 aaeCLIP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms