RNA–Protein interactions for RNA: ENST00000562609.2

GTF3C1-203, Transcript of general transcription factor IIIC subunit 1, humanhuman

TSL 5

Gene GTF3C1, Length 2,824 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C1-203ENST00000562609 KCNG1Q9UIX4 513 aa16.3■□□□□ 0.2
GTF3C1-203ENST00000562609 SNX14Q9Y5W7 946 aa16.3■□□□□ 0.2
GTF3C1-203ENST00000562609 MNS1Q8NEH6 495 aa16.3■□□□□ 0.2
GTF3C1-203ENST00000562609 EAF2Q96CJ1 260 aaPredicted RBP16.3■□□□□ 0.2
GTF3C1-203ENST00000562609 G3BP1Q13283 466 aaKnown RBP eCLIP16.29■□□□□ 0.22e-6■■□□□ 12
GTF3C1-203ENST00000562609 IQCB1Q15051 598 aa16.29■□□□□ 0.2
GTF3C1-203ENST00000562609 E2F4Q16254 413 aa16.29■□□□□ 0.2
GTF3C1-203ENST00000562609 ZBTB3Q9H5J0 574 aa16.29■□□□□ 0.2
GTF3C1-203ENST00000562609 TUBGCP6Q96RT7 1819 aa16.29■□□□□ 0.2
GTF3C1-203ENST00000562609 A0A087WZG4 1122 aa16.29■□□□□ 0.2
GTF3C1-203ENST00000562609 NR1I2O75469 434 aa16.29■□□□□ 0.2
GTF3C1-203ENST00000562609 EPC1Q9H2F5 836 aa16.29■□□□□ 0.2
GTF3C1-203ENST00000562609 RASEFQ8IZ41 740 aa16.28■□□□□ 0.2
GTF3C1-203ENST00000562609 IQUBQ8NA54 791 aa16.28■□□□□ 0.2
GTF3C1-203ENST00000562609 TFIP11Q9UBB9 837 aaKnown RBP16.28■□□□□ 0.2
GTF3C1-203ENST00000562609 CCDC9Q9Y3X0 531 aaKnown RBP16.28■□□□□ 0.2
GTF3C1-203ENST00000562609 CEP83Q9Y592 693 aa16.28■□□□□ 0.2
GTF3C1-203ENST00000562609 LEKR1Q6ZMV7 388 aa16.28■□□□□ 0.2
GTF3C1-203ENST00000562609 CARD10Q9BWT7 1032 aa16.28■□□□□ 0.2
GTF3C1-203ENST00000562609 CCDC172P0C7W6 258 aa16.27■□□□□ 0.2
GTF3C1-203ENST00000562609 CC2D1AQ6P1N0 951 aaPredicted RBP16.27■□□□□ 0.2
GTF3C1-203ENST00000562609 C11orf57Q6ZUT1 292 aaPredicted RBP16.27■□□□□ 0.2
GTF3C1-203ENST00000562609 HOMER1Q86YM7 354 aa16.27■□□□□ 0.2
GTF3C1-203ENST00000562609 PSD3Q9NYI0 1048 aa16.27■□□□□ 0.2
GTF3C1-203ENST00000562609 UTYO14607 1347 aa16.27■□□□□ 0.2
GTF3C1-203ENST00000562609 CNTROBQ8N137 903 aa16.27■□□□□ 0.2
GTF3C1-203ENST00000562609 SPATA32Q96LK8 384 aa16.27■□□□□ 0.2
GTF3C1-203ENST00000562609 PKD1L3Q7Z443 1732 aa16.27■□□□□ 0.19
GTF3C1-203ENST00000562609 BECN2A8MW95 431 aa16.27■□□□□ 0.19
GTF3C1-203ENST00000562609 CAVIN2O95810 425 aa16.27■□□□□ 0.19
GTF3C1-203ENST00000562609 LARP1BQ659C4 914 aaKnown RBP16.27■□□□□ 0.19
GTF3C1-203ENST00000562609 BICD2Q8TD16 824 aa16.27■□□□□ 0.19
GTF3C1-203ENST00000562609 ECHDC1Q9NTX5 307 aa16.27■□□□□ 0.19
GTF3C1-203ENST00000562609 DNAI1Q9UI46 699 aa16.27■□□□□ 0.19
GTF3C1-203ENST00000562609 NDUFB9Q9Y6M9 179 aa16.27■□□□□ 0.19
GTF3C1-203ENST00000562609 EIF3CLB5ME19 914 aaKnown RBP16.26■□□□□ 0.19
GTF3C1-203ENST00000562609 TADA3O75528 432 aa16.26■□□□□ 0.19
GTF3C1-203ENST00000562609 IVLP07476 585 aa16.26■□□□□ 0.19
GTF3C1-203ENST00000562609 CDC37L1Q7L3B6 337 aa16.26■□□□□ 0.19
GTF3C1-203ENST00000562609 EIF3CQ99613 913 aaKnown RBP16.26■□□□□ 0.19
GTF3C1-203ENST00000562609 CCDC158Q5M9N0 1113 aa16.26■□□□□ 0.19
GTF3C1-203ENST00000562609 CARD6Q9BX69 1037 aa16.26■□□□□ 0.19
GTF3C1-203ENST00000562609 BOLA2Q9H3K6 86 aa16.26■□□□□ 0.19
GTF3C1-203ENST00000562609 AOX1Q06278 1338 aa16.26■□□□□ 0.19
GTF3C1-203ENST00000562609 GLRX3O76003 335 aaKnown RBP16.25■□□□□ 0.19
GTF3C1-203ENST00000562609 GSDMDP57764 484 aa16.25■□□□□ 0.19
GTF3C1-203ENST00000562609 FOXR1Q6PIV2 292 aa16.25■□□□□ 0.19
GTF3C1-203ENST00000562609 ASAP1Q9ULH1 1129 aa16.25■□□□□ 0.19
GTF3C1-203ENST00000562609 MRC1P22897 1456 aa16.25■□□□□ 0.19
GTF3C1-203ENST00000562609 EVCP57679 992 aa16.25■□□□□ 0.19
GTF3C1-203ENST00000562609 EDC3Q96F86 508 aaKnown RBP16.25■□□□□ 0.19
GTF3C1-203ENST00000562609 SCAND2PQ9GZW5 306 aaPredicted RBP16.25■□□□□ 0.19
GTF3C1-203ENST00000562609 SGSM2O43147 1006 aa16.24■□□□□ 0.19
GTF3C1-203ENST00000562609 URI1O94763 535 aaPredicted RBP16.24■□□□□ 0.19
GTF3C1-203ENST00000562609 NECAB1Q8N987 351 aa16.24■□□□□ 0.19
GTF3C1-203ENST00000562609 EFCAB8A8MWE9 144 aa16.24■□□□□ 0.19
GTF3C1-203ENST00000562609 ERVV-2B6SEH9 535 aa16.24■□□□□ 0.19
GTF3C1-203ENST00000562609 ANKRD65E5RJM6 399 aa16.24■□□□□ 0.19
GTF3C1-203ENST00000562609 H3BQF6 201 aa16.24■□□□□ 0.19
GTF3C1-203ENST00000562609 TPM1P09493 284 aa16.24■□□□□ 0.19
GTF3C1-203ENST00000562609 ERC1Q8IUD2 1116 aa16.24■□□□□ 0.19
GTF3C1-203ENST00000562609 PLBD2Q8NHP8 589 aa16.24■□□□□ 0.19
GTF3C1-203ENST00000562609 PPM1EQ8WY54 764 aa16.24■□□□□ 0.19
GTF3C1-203ENST00000562609 ETF1P62495 437 aaKnown RBP16.23■□□□□ 0.19
GTF3C1-203ENST00000562609 CCDC91Q7Z6B0 441 aa16.23■□□□□ 0.19
GTF3C1-203ENST00000562609 LEO1Q8WVC0 666 aaPredicted RBP16.23■□□□□ 0.19
GTF3C1-203ENST00000562609 CXorf56Q9H5V9 222 aa16.23■□□□□ 0.19
GTF3C1-203ENST00000562609 ARFGAP3Q9NP61 516 aa16.23■□□□□ 0.19
GTF3C1-203ENST00000562609 A0A0G2JS52 829 aa16.23■□□□□ 0.19
GTF3C1-203ENST00000562609 PSDA5PKW4 1024 aaPredicted RBP16.23■□□□□ 0.19
GTF3C1-203ENST00000562609 EPB41L2O43491 1005 aaKnown RBP16.23■□□□□ 0.19
GTF3C1-203ENST00000562609 LMBR1LQ6UX01 489 aa16.23■□□□□ 0.19
GTF3C1-203ENST00000562609 TMOD3Q9NYL9 352 aa16.23■□□□□ 0.19
GTF3C1-203ENST00000562609 TTC41PQ6P2S7 1318 aa16.23■□□□□ 0.19
GTF3C1-203ENST00000562609 ST3GAL1Q11201 340 aa16.23■□□□□ 0.19
GTF3C1-203ENST00000562609 A0A087WWV3 80 aa16.22■□□□□ 0.19
GTF3C1-203ENST00000562609 PTPN12Q05209 780 aaKnown RBP16.22■□□□□ 0.19
GTF3C1-203ENST00000562609 TFCP2Q12800 502 aa16.22■□□□□ 0.19
GTF3C1-203ENST00000562609 GNL2Q13823 731 aaKnown RBP16.22■□□□□ 0.19
GTF3C1-203ENST00000562609 PGBD1Q96JS3 809 aa16.22■□□□□ 0.19
GTF3C1-203ENST00000562609 FUT8Q9BYC5 575 aa16.22■□□□□ 0.19
GTF3C1-203ENST00000562609 FAM227BQ96M60 508 aa16.22■□□□□ 0.19
GTF3C1-203ENST00000562609 CCDC85AQ96PX6 553 aaPredicted RBP16.22■□□□□ 0.19
GTF3C1-203ENST00000562609 PDRG1Q9NUG6 133 aa16.22■□□□□ 0.19
GTF3C1-203ENST00000562609 CHGBP05060 677 aa16.21■□□□□ 0.19
GTF3C1-203ENST00000562609 PTH1RQ03431 593 aa16.21■□□□□ 0.19
GTF3C1-203ENST00000562609 NKX1-1Q15270 411 aaPredicted RBP16.21■□□□□ 0.19
GTF3C1-203ENST00000562609 STX1AQ16623 288 aa16.21■□□□□ 0.19
GTF3C1-203ENST00000562609 PIGBQ92521 554 aa16.21■□□□□ 0.19
GTF3C1-203ENST00000562609 SRRTQ9BXP5 876 aaKnown RBP16.21■□□□□ 0.19
GTF3C1-203ENST00000562609 OSBPL5Q9H0X9 879 aaPredicted RBP16.21■□□□□ 0.19
GTF3C1-203ENST00000562609 VPS18Q9P253 973 aa16.21■□□□□ 0.19
GTF3C1-203ENST00000562609 PHLPP2Q6ZVD8 1323 aa16.21■□□□□ 0.19
GTF3C1-203ENST00000562609 TUBB4AP04350 444 aa16.21■□□□□ 0.19
GTF3C1-203ENST00000562609 ME3Q16798 604 aa16.21■□□□□ 0.19
GTF3C1-203ENST00000562609 LRRFIP1Q32MZ4 808 aaKnown RBP16.21■□□□□ 0.19
GTF3C1-203ENST00000562609 NBPF11Q86T75 865 aa16.21■□□□□ 0.19
GTF3C1-203ENST00000562609 GPATCH3Q96I76 525 aa16.21■□□□□ 0.19
GTF3C1-203ENST00000562609 LSG1Q9H089 658 aaKnown RBP16.21■□□□□ 0.19
GTF3C1-203ENST00000562609 SH2B1Q9NRF2 756 aaPredicted RBP16.21■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms