RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 SLC27A2O14975 620 aa25.5■■□□□ 1.67
CLN3-209ENST00000561689 MAP3K12Q12852 859 aa25.5■■□□□ 1.67
CLN3-209ENST00000561689 KCNB2Q92953 911 aa25.5■■□□□ 1.67
CLN3-209ENST00000561689 UFL1O94874 794 aa25.49■■□□□ 1.67
CLN3-209ENST00000561689 UBE3CQ15386 1083 aa25.49■■□□□ 1.67
CLN3-209ENST00000561689 MASTLQ96GX5 879 aa25.49■■□□□ 1.67
CLN3-209ENST00000561689 DENND2AQ9ULE3 1009 aa25.49■■□□□ 1.67
CLN3-209ENST00000561689 K7ELQ4 463 aaPredicted RBP25.49■■□□□ 1.67
CLN3-209ENST00000561689 HSPD1P10809 573 aaKnown RBP25.49■■□□□ 1.67
CLN3-209ENST00000561689 ZKSCAN1P17029 563 aaPredicted RBP25.49■■□□□ 1.67
CLN3-209ENST00000561689 C2CD5Q86YS7 1000 aa25.49■■□□□ 1.67
CLN3-209ENST00000561689 MAGEB6Q8N7X4 407 aa25.49■■□□□ 1.67
CLN3-209ENST00000561689 LRP2BPQ9P2M1 347 aa25.49■■□□□ 1.67
CLN3-209ENST00000561689 ABCF2Q9UG63 623 aa25.49■■□□□ 1.67
CLN3-209ENST00000561689 TCRBV5S4A2TA0A5A2 114 aa25.48■■□□□ 1.67
CLN3-209ENST00000561689 ZNF622Q969S3 477 aaKnown RBP eCLIP25.48■■□□□ 1.67
CLN3-209ENST00000561689 GGA1Q9UJY5 639 aa25.48■■□□□ 1.67
CLN3-209ENST00000561689 ADCK5Q3MIX3 580 aa25.47■■□□□ 1.67
CLN3-209ENST00000561689 TMC4Q7Z404 712 aa25.47■■□□□ 1.67
CLN3-209ENST00000561689 SP8Q8IXZ3 490 aa25.47■■□□□ 1.67
CLN3-209ENST00000561689 ATP6V0A2Q9Y487 856 aa25.47■■□□□ 1.67
CLN3-209ENST00000561689 TAF6LQ9Y6J9 622 aa25.47■■□□□ 1.67
CLN3-209ENST00000561689 U3KPZ7 1027 aaPredicted RBP25.47■■□□□ 1.67
CLN3-209ENST00000561689 SEMA3EO15041 775 aa25.47■■□□□ 1.67
CLN3-209ENST00000561689 ATP2B4P23634 1241 aa25.47■■□□□ 1.67
CLN3-209ENST00000561689 ALDH1B1P30837 517 aa25.47■■□□□ 1.67
CLN3-209ENST00000561689 RNF20Q5VTR2 975 aa25.47■■□□□ 1.67
CLN3-209ENST00000561689 DSCC1Q9BVC3 393 aa25.47■■□□□ 1.67
CLN3-209ENST00000561689 SLKQ9H2G2 1235 aaPredicted RBP25.47■■□□□ 1.67
CLN3-209ENST00000561689 QSER1Q2KHR3 1735 aa25.47■■□□□ 1.67
CLN3-209ENST00000561689 GPAA1O43292 621 aa25.46■■□□□ 1.67
CLN3-209ENST00000561689 OLFM4Q6UX06 510 aa25.46■■□□□ 1.67
CLN3-209ENST00000561689 POLLQ9UGP5 575 aa25.46■■□□□ 1.67
CLN3-209ENST00000561689 H0YIN7 160 aa25.45■■□□□ 1.67
CLN3-209ENST00000561689 JAKMIP1Q96N16 626 aaKnown RBP25.45■■□□□ 1.67
CLN3-209ENST00000561689 PODXL2Q9NZ53 605 aa25.45■■□□□ 1.67
CLN3-209ENST00000561689 CPA1P15085 419 aa25.45■■□□□ 1.66
CLN3-209ENST00000561689 CASTP20810 708 aaKnown RBP25.45■■□□□ 1.66
CLN3-209ENST00000561689 CHAF1AQ13111 956 aaPredicted RBP25.45■■□□□ 1.66
CLN3-209ENST00000561689 TBC1D16Q8TBP0 767 aa25.45■■□□□ 1.66
CLN3-209ENST00000561689 JAG2Q9Y219 1238 aa25.45■■□□□ 1.66
CLN3-209ENST00000561689 CHRNA5P30532 468 aa25.44■■□□□ 1.66
CLN3-209ENST00000561689 RAI14Q9P0K7 980 aa25.44■■□□□ 1.66
CLN3-209ENST00000561689 C6orf229H3BNL8 230 aa25.44■■□□□ 1.66
CLN3-209ENST00000561689 FOXP2O15409 715 aa25.44■■□□□ 1.66
CLN3-209ENST00000561689 C15orf52Q6ZUT6 534 aaKnown RBP25.43■■□□□ 1.66
CLN3-209ENST00000561689 MYO5AQ9Y4I1 1855 aaKnown RBP25.43■■□□□ 1.66
CLN3-209ENST00000561689 COL11A2P13942 1736 aaPredicted RBP25.42■■□□□ 1.66
CLN3-209ENST00000561689 CYP21A2P08686 494 aa25.42■■□□□ 1.66
CLN3-209ENST00000561689 ZNF804AQ7Z570 1209 aa25.42■■□□□ 1.66
CLN3-209ENST00000561689 NOL8Q76FK4 1167 aaKnown RBP25.42■■□□□ 1.66
CLN3-209ENST00000561689 SLC16A10Q8TF71 515 aa25.42■■□□□ 1.66
CLN3-209ENST00000561689 STYK1Q6J9G0 422 aa25.41■■□□□ 1.66
CLN3-209ENST00000561689 AIDAQ96BJ3 306 aa25.41■■□□□ 1.66
CLN3-209ENST00000561689 TM6SF1Q9BZW5 370 aa25.41■■□□□ 1.66
CLN3-209ENST00000561689 FOXD4L1Q9NU39 408 aa25.41■■□□□ 1.66
CLN3-209ENST00000561689 PDS5AQ29RF7 1337 aaKnown RBP25.41■■□□□ 1.66
CLN3-209ENST00000561689 A0A0G2JLW4 131 aa25.4■■□□□ 1.66
CLN3-209ENST00000561689 COL9A3Q14050 684 aaPredicted RBP25.4■■□□□ 1.66
CLN3-209ENST00000561689 TTLL5Q6EMB2 1281 aa25.4■■□□□ 1.66
CLN3-209ENST00000561689 ZSWIM6Q9HCJ5 1215 aa25.4■■□□□ 1.66
CLN3-209ENST00000561689 HSP90AA1P07900 732 aaKnown RBP25.4■■□□□ 1.66
CLN3-209ENST00000561689 TSGA10IPQ3SY00 556 aa25.4■■□□□ 1.66
CLN3-209ENST00000561689 TDRD7Q8NHU6 1098 aaKnown RBP25.4■■□□□ 1.66
CLN3-209ENST00000561689 MYH7P12883 1935 aa25.39■■□□□ 1.66
CLN3-209ENST00000561689 MBD4O95243 580 aa25.39■■□□□ 1.66
CLN3-209ENST00000561689 CYP7A1P22680 504 aa25.39■■□□□ 1.66
CLN3-209ENST00000561689 MPNDQ8N594 471 aa25.39■■□□□ 1.66
CLN3-209ENST00000561689 STRBPQ96SI9 672 aaKnown RBP25.39■■□□□ 1.66
CLN3-209ENST00000561689 ZBTB7AO95365 584 aa25.38■■□□□ 1.65
CLN3-209ENST00000561689 ADGRA1Q86SQ6 560 aa25.38■■□□□ 1.65
CLN3-209ENST00000561689 MIGA1Q8NAN2 632 aa25.38■■□□□ 1.65
CLN3-209ENST00000561689 TTC14Q96N46 770 aa25.38■■□□□ 1.65
CLN3-209ENST00000561689 TMX4Q9H1E5 349 aaPredicted RBP25.38■■□□□ 1.65
CLN3-209ENST00000561689 CD209Q9NNX6 404 aa25.38■■□□□ 1.65
CLN3-209ENST00000561689 CYP46A1Q9Y6A2 500 aa25.38■■□□□ 1.65
CLN3-209ENST00000561689 RPAP1Q9BWH6 1393 aaPredicted RBP25.38■■□□□ 1.65
CLN3-209ENST00000561689 DOCK2Q92608 1830 aa25.38■■□□□ 1.65
CLN3-209ENST00000561689 FGAP02671 866 aa25.38■■□□□ 1.65
CLN3-209ENST00000561689 DPP8Q6V1X1 898 aaPredicted RBP25.38■■□□□ 1.65
CLN3-209ENST00000561689 RUFY3Q7L099 469 aa25.38■■□□□ 1.65
CLN3-209ENST00000561689 ARMT1Q9H993 441 aa25.38■■□□□ 1.65
CLN3-209ENST00000561689 PSMA5P28066 241 aa25.37■■□□□ 1.65
CLN3-209ENST00000561689 MCM2P49736 904 aa25.37■■□□□ 1.65
CLN3-209ENST00000561689 ZNF384Q8TF68 577 aa25.37■■□□□ 1.65
CLN3-209ENST00000561689 ZNF219Q9P2Y4 722 aaPredicted RBP25.37■■□□□ 1.65
CLN3-209ENST00000561689 LRRC37AA6NMS7 1700 aa25.37■■□□□ 1.65
CLN3-209ENST00000561689 RIMBP2O15034 1052 aa25.36■■□□□ 1.65
CLN3-209ENST00000561689 APPP05067 770 aa25.36■■□□□ 1.65
CLN3-209ENST00000561689 PRDX5P30044 214 aa25.36■■□□□ 1.65
CLN3-209ENST00000561689 PDRG1Q9NUG6 133 aa25.36■■□□□ 1.65
CLN3-209ENST00000561689 CTNNA3Q9UI47 895 aa25.36■■□□□ 1.65
CLN3-209ENST00000561689 ZBTB22O15209 634 aa25.36■■□□□ 1.65
CLN3-209ENST00000561689 KRT32Q14532 448 aa25.36■■□□□ 1.65
CLN3-209ENST00000561689 TMX3Q96JJ7 454 aa25.36■■□□□ 1.65
CLN3-209ENST00000561689 AK2P54819 239 aa25.35■■□□□ 1.65
CLN3-209ENST00000561689 MECOMQ03112 1051 aa25.35■■□□□ 1.65
CLN3-209ENST00000561689 NAA16Q6N069 864 aaPredicted RBP25.35■■□□□ 1.65
CLN3-209ENST00000561689 LCORLQ8N3X6 602 aa25.35■■□□□ 1.65
CLN3-209ENST00000561689 CNKSR1Q969H4 720 aa25.35■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 140.7 ms