RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 C16orf46Q6P387 395 aa4.51□□□□□ -1.69
SPG11-223ENST00000560858 ZAR1Q86SH2 424 aa4.51□□□□□ -1.69
SPG11-223ENST00000560858 CCER1Q8TC90 406 aaPredicted RBP4.51□□□□□ -1.69
SPG11-223ENST00000560858 FBLIM1Q8WUP2 373 aa4.51□□□□□ -1.69
SPG11-223ENST00000560858 TMPRSS13Q9BYE2 586 aa4.51□□□□□ -1.69
SPG11-223ENST00000560858 SLC5A6Q9Y289 635 aa4.51□□□□□ -1.69
SPG11-223ENST00000560858 EXOSC6Q5RKV6 272 aaKnown RBP4.5□□□□□ -1.69
SPG11-223ENST00000560858 GLMNQ92990 594 aa4.5□□□□□ -1.69
SPG11-223ENST00000560858 ARXQ96QS3 562 aa4.5□□□□□ -1.69
SPG11-223ENST00000560858 KRTAP4-5Q9BYR2 181 aa4.5□□□□□ -1.69
SPG11-223ENST00000560858 PPP1R12CQ9BZL4 782 aa4.5□□□□□ -1.69
SPG11-223ENST00000560858 LRRC4CQ9HCJ2 640 aa4.5□□□□□ -1.69
SPG11-223ENST00000560858 PDE2AO00408 941 aaPredicted RBP4.49□□□□□ -1.69
SPG11-223ENST00000560858 EIF4EBP3O60516 100 aaPredicted RBP4.49□□□□□ -1.69
SPG11-223ENST00000560858 TIAF1O95411 115 aa4.49□□□□□ -1.69
SPG11-223ENST00000560858 DRD2P14416 443 aa4.49□□□□□ -1.69
SPG11-223ENST00000560858 ADMP35318 185 aa4.49□□□□□ -1.69
SPG11-223ENST00000560858 PDE12Q6L8Q7 609 aaKnown RBP4.49□□□□□ -1.69
SPG11-223ENST00000560858 ATG4DQ86TL0 474 aaPredicted RBP4.49□□□□□ -1.69
SPG11-223ENST00000560858 SHISA5Q8N114 240 aa4.49□□□□□ -1.69
SPG11-223ENST00000560858 STK11IPQ8N1F8 1099 aa4.49□□□□□ -1.69
SPG11-223ENST00000560858 TMEM40Q8WWA1 233 aa4.49□□□□□ -1.69
SPG11-223ENST00000560858 USP26Q9BXU7 913 aa4.49□□□□□ -1.69
SPG11-223ENST00000560858 PRKAG2Q9UGJ0 569 aa4.49□□□□□ -1.69
SPG11-223ENST00000560858 ZC3H7BQ9UGR2 993 aaKnown RBP4.49□□□□□ -1.69
SPG11-223ENST00000560858 FAM170BA6NMN3 283 aa4.48□□□□□ -1.69
SPG11-223ENST00000560858 CYP2E1P05181 493 aaPredicted RBP4.48□□□□□ -1.69
SPG11-223ENST00000560858 LMOD1P29536 600 aaPredicted RBP4.48□□□□□ -1.69
SPG11-223ENST00000560858 ZAP70P43403 619 aa4.48□□□□□ -1.69
SPG11-223ENST00000560858 FKBP5Q13451 457 aaPredicted RBP4.48□□□□□ -1.69
SPG11-223ENST00000560858 IKBKEQ14164 716 aa4.48□□□□□ -1.69
SPG11-223ENST00000560858 MAP7Q14244 749 aa4.48□□□□□ -1.69
SPG11-223ENST00000560858 ZNF792Q3KQV3 632 aa4.48□□□□□ -1.69
SPG11-223ENST00000560858 CDPF1Q6NVV7 123 aa4.48□□□□□ -1.69
SPG11-223ENST00000560858 GPR152Q8TDT2 470 aa4.48□□□□□ -1.69
SPG11-223ENST00000560858 EZH1Q92800 747 aaPredicted RBP4.48□□□□□ -1.69
SPG11-223ENST00000560858 ELP3Q9H9T3 547 aa4.48□□□□□ -1.69
SPG11-223ENST00000560858 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.48□□□□□ -1.69
SPG11-223ENST00000560858 CARMIL2Q6F5E8 1435 aa4.47□□□□□ -1.69
SPG11-223ENST00000560858 CES1P23141 567 aa4.47□□□□□ -1.69
SPG11-223ENST00000560858 SOX4Q06945 474 aaPredicted RBP4.47□□□□□ -1.69
SPG11-223ENST00000560858 BCL7CQ8WUZ0 217 aaPredicted RBP4.47□□□□□ -1.69
SPG11-223ENST00000560858 FAM168AQ92567 244 aa4.47□□□□□ -1.69
SPG11-223ENST00000560858 SAP130Q9H0E3 1048 aa4.47□□□□□ -1.69
SPG11-223ENST00000560858 DZANK1Q9NVP4 752 aa4.47□□□□□ -1.69
SPG11-223ENST00000560858 LOC100289279A0A1B0GTE1 492 aa4.46□□□□□ -1.7
SPG11-223ENST00000560858 SOX1O00570 391 aaPredicted RBP4.46□□□□□ -1.7
SPG11-223ENST00000560858 RPLP1P05386 114 aaKnown RBP4.46□□□□□ -1.7
SPG11-223ENST00000560858 TMEM132AQ24JP5 1023 aa4.46□□□□□ -1.7
SPG11-223ENST00000560858 ZNF765Q7L2R6 523 aa4.46□□□□□ -1.7
SPG11-223ENST00000560858 ZNF438Q7Z4V0 828 aa4.46□□□□□ -1.7
SPG11-223ENST00000560858 C2CD4AQ8NCU7 369 aaPredicted RBP4.46□□□□□ -1.7
SPG11-223ENST00000560858 BHLHE22Q8NFJ8 381 aaPredicted RBP4.46□□□□□ -1.7
SPG11-223ENST00000560858 BSNDQ8WZ55 320 aa4.46□□□□□ -1.7
SPG11-223ENST00000560858 PMEPA1Q969W9 287 aa4.46□□□□□ -1.7
SPG11-223ENST00000560858 MISP3Q96FF7 219 aa4.46□□□□□ -1.7
SPG11-223ENST00000560858 FAM84AQ96KN4 292 aa4.46□□□□□ -1.7
SPG11-223ENST00000560858 CALR3Q96L12 384 aaKnown RBP4.46□□□□□ -1.7
SPG11-223ENST00000560858 PRIMPOLQ96LW4 560 aa4.46□□□□□ -1.7
SPG11-223ENST00000560858 KANSL3Q9P2N6 904 aa4.46□□□□□ -1.7
SPG11-223ENST00000560858 SALL4Q9UJQ4 1053 aa4.46□□□□□ -1.7
SPG11-223ENST00000560858 SOX13Q9UN79 622 aa4.46□□□□□ -1.7
SPG11-223ENST00000560858 CCDC180Q9P1Z9 1646 aa4.46□□□□□ -1.7
SPG11-223ENST00000560858 NFKBIEO00221 500 aa4.45□□□□□ -1.7
SPG11-223ENST00000560858 NFICP08651 508 aa4.45□□□□□ -1.7
SPG11-223ENST00000560858 RFX1P22670 979 aa4.45□□□□□ -1.7
SPG11-223ENST00000560858 HGSNATQ68CP4 663 aa4.45□□□□□ -1.7
SPG11-223ENST00000560858 LILRA6Q6PI73 481 aa4.45□□□□□ -1.7
SPG11-223ENST00000560858 TTC16Q8NEE8 873 aa4.45□□□□□ -1.7
SPG11-223ENST00000560858 GATA6Q92908 595 aa4.45□□□□□ -1.7
SPG11-223ENST00000560858 TOX2Q96NM4 488 aa4.45□□□□□ -1.7
SPG11-223ENST00000560858 SOX17Q9H6I2 414 aaPredicted RBP4.45□□□□□ -1.7
SPG11-223ENST00000560858 RC3H2Q9HBD1 1191 aaKnown RBP4.45□□□□□ -1.7
SPG11-223ENST00000560858 STIM2Q9P246 746 aa4.45□□□□□ -1.7
SPG11-223ENST00000560858 PRMT3O60678 531 aa4.44□□□□□ -1.7
SPG11-223ENST00000560858 DLGAP3O95886 979 aa4.44□□□□□ -1.7
SPG11-223ENST00000560858 ZNF865P0CJ78 1059 aaPredicted RBP4.44□□□□□ -1.7
SPG11-223ENST00000560858 SWI5Q1ZZU3 235 aa4.44□□□□□ -1.7
SPG11-223ENST00000560858 FAM26DQ5JW98 314 aa4.44□□□□□ -1.7
SPG11-223ENST00000560858 SPRED2Q7Z698 418 aa4.44□□□□□ -1.7
SPG11-223ENST00000560858 ABTB2Q8N961 1025 aa4.44□□□□□ -1.7
SPG11-223ENST00000560858 TMEM102Q8N9M5 508 aaPredicted RBP4.44□□□□□ -1.7
SPG11-223ENST00000560858 GLIS3Q8NEA6 775 aa4.44□□□□□ -1.7
SPG11-223ENST00000560858 FAM53CQ9NYF3 392 aa4.44□□□□□ -1.7
SPG11-223ENST00000560858 TMEM63CQ9P1W3 806 aa4.44□□□□□ -1.7
SPG11-223ENST00000560858 CNTN3Q9P232 1028 aa4.44□□□□□ -1.7
SPG11-223ENST00000560858 PRRG2O14669 202 aa4.43□□□□□ -1.7
SPG11-223ENST00000560858 TNFRSF10BO14763 440 aa4.43□□□□□ -1.7
SPG11-223ENST00000560858 TRPA1O75762 1119 aa4.43□□□□□ -1.7
SPG11-223ENST00000560858 PCSK2P16519 638 aa4.43□□□□□ -1.7
SPG11-223ENST00000560858 GSTM4Q03013 218 aa4.43□□□□□ -1.7
SPG11-223ENST00000560858 NAA30Q147X3 362 aaPredicted RBP4.43□□□□□ -1.7
SPG11-223ENST00000560858 CYP27C1Q4G0S4 372 aa4.43□□□□□ -1.7
SPG11-223ENST00000560858 HP1BP3Q5SSJ5 553 aaPredicted RBP4.43□□□□□ -1.7
SPG11-223ENST00000560858 LCE5AQ5TCM9 118 aa4.43□□□□□ -1.7
SPG11-223ENST00000560858 OGFOD3Q6PK18 319 aa4.43□□□□□ -1.7
SPG11-223ENST00000560858 ZNF574Q6ZN55 896 aaPredicted RBP4.43□□□□□ -1.7
SPG11-223ENST00000560858 VN1R5Q7Z5H4 357 aa4.43□□□□□ -1.7
SPG11-223ENST00000560858 ZSCAN18Q8TBC5 510 aaPredicted RBP4.43□□□□□ -1.7
SPG11-223ENST00000560858 PI4K2BQ8TCG2 481 aa4.43□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms