RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 CCDC136Q96JN2 1154 aa12.33□□□□□ -0.44
USP3-216ENST00000559873 ZNF512BQ96KM6 892 aaPredicted RBP12.33□□□□□ -0.44
USP3-216ENST00000559873 CCDC8Q9H0W5 538 aaPredicted RBP12.33□□□□□ -0.44
USP3-216ENST00000559873 BCL11AQ9H165 835 aa12.33□□□□□ -0.44
USP3-216ENST00000559873 FAM205AQ6ZU69 1335 aa12.33□□□□□ -0.44
USP3-216ENST00000559873 PSMD14O00487 310 aa12.32□□□□□ -0.44
USP3-216ENST00000559873 MMP14P50281 582 aa12.32□□□□□ -0.44
USP3-216ENST00000559873 CHAF1AQ13111 956 aaPredicted RBP12.32□□□□□ -0.44
USP3-216ENST00000559873 CENPQQ7L2Z9 268 aaPredicted RBP12.32□□□□□ -0.44
USP3-216ENST00000559873 L3MBTL3Q96JM7 780 aaPredicted RBP12.32□□□□□ -0.44
USP3-216ENST00000559873 IQSEC3Q9UPP2 1182 aaPredicted RBP12.32□□□□□ -0.44
USP3-216ENST00000559873 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.32□□□□□ -0.44
USP3-216ENST00000559873 MYH13Q9UKX3 1938 aa12.32□□□□□ -0.44
USP3-216ENST00000559873 MAST3O60307 1309 aa12.32□□□□□ -0.44
USP3-216ENST00000559873 SCN9AQ15858 1988 aa12.31□□□□□ -0.44
USP3-216ENST00000559873 DDNO94850 711 aaPredicted RBP12.31□□□□□ -0.44
USP3-216ENST00000559873 IGHDP01880 384 aa12.31□□□□□ -0.44
USP3-216ENST00000559873 VIL1P09327 827 aaKnown RBP12.31□□□□□ -0.44
USP3-216ENST00000559873 MFSD14BQ5SR56 506 aa12.31□□□□□ -0.44
USP3-216ENST00000559873 DACT2Q5SW24 774 aa12.31□□□□□ -0.44
USP3-216ENST00000559873 OGFOD1Q8N543 542 aa12.31□□□□□ -0.44
USP3-216ENST00000559873 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.31□□□□□ -0.44
USP3-216ENST00000559873 DPF2Q92785 391 aa12.31□□□□□ -0.44
USP3-216ENST00000559873 GPBP1L1Q9HC44 474 aaPredicted RBP12.31□□□□□ -0.44
USP3-216ENST00000559873 TLR7Q9NYK1 1049 aaKnown RBP12.31□□□□□ -0.44
USP3-216ENST00000559873 SUGT1Q9Y2Z0 365 aa12.31□□□□□ -0.44
USP3-216ENST00000559873 WDR90Q96KV7 1748 aa12.31□□□□□ -0.44
USP3-216ENST00000559873 H7C1D1 291 aa12.3□□□□□ -0.44
USP3-216ENST00000559873 ERC2O15083 957 aa12.3□□□□□ -0.44
USP3-216ENST00000559873 SMARCA5O60264 1052 aaPredicted RBP12.3□□□□□ -0.44
USP3-216ENST00000559873 IGSF3O75054 1194 aa12.3□□□□□ -0.44
USP3-216ENST00000559873 GMPSP49915 693 aaPredicted RBP12.3□□□□□ -0.44
USP3-216ENST00000559873 RASGRF1Q13972 1273 aa12.3□□□□□ -0.44
USP3-216ENST00000559873 B4GALNT3Q6L9W6 998 aa12.3□□□□□ -0.44
USP3-216ENST00000559873 CHD1LQ86WJ1 897 aa12.3□□□□□ -0.44
USP3-216ENST00000559873 SPATA5Q8NB90 893 aa12.3□□□□□ -0.44
USP3-216ENST00000559873 ECHDC1Q9NTX5 307 aa12.3□□□□□ -0.44
USP3-216ENST00000559873 PPP4R2Q9NY27 417 aa12.3□□□□□ -0.44
USP3-216ENST00000559873 HACL1Q9UJ83 578 aa12.3□□□□□ -0.44
USP3-216ENST00000559873 HDAC9Q9UKV0 1011 aa12.3□□□□□ -0.44
USP3-216ENST00000559873 TTC41PQ6P2S7 1318 aa12.3□□□□□ -0.44
USP3-216ENST00000559873 SALL1Q9NSC2 1324 aa12.3□□□□□ -0.44
USP3-216ENST00000559873 COL1A1P02452 1464 aaPredicted RBP12.29□□□□□ -0.44
USP3-216ENST00000559873 USP17L8P0C7I0 530 aa12.29□□□□□ -0.44
USP3-216ENST00000559873 MX1P20591 662 aa12.29□□□□□ -0.44
USP3-216ENST00000559873 NUCB1Q02818 461 aa12.29□□□□□ -0.44
USP3-216ENST00000559873 SPTY2D1Q68D10 685 aaPredicted RBP12.29□□□□□ -0.44
USP3-216ENST00000559873 ZNF526Q8TF50 670 aaPredicted RBP12.29□□□□□ -0.44
USP3-216ENST00000559873 KCNQ5Q9NR82 932 aa12.29□□□□□ -0.44
USP3-216ENST00000559873 GPRC5DQ9NZD1 345 aa12.29□□□□□ -0.44
USP3-216ENST00000559873 JAG2Q9Y219 1238 aa12.29□□□□□ -0.44
USP3-216ENST00000559873 SCN4AP35499 1836 aa12.29□□□□□ -0.44
USP3-216ENST00000559873 VEGFAP15692 232 aaPredicted RBP12.28□□□□□ -0.44
USP3-216ENST00000559873 MCAMP43121 646 aa12.28□□□□□ -0.44
USP3-216ENST00000559873 SCNN1DP51172 638 aa12.28□□□□□ -0.44
USP3-216ENST00000559873 TTF1Q15361 905 aaPredicted RBP12.28□□□□□ -0.44
USP3-216ENST00000559873 PNMA8AQ86V59 439 aaPredicted RBP12.28□□□□□ -0.44
USP3-216ENST00000559873 KIAA0825Q8IV33 1275 aa12.28□□□□□ -0.44
USP3-216ENST00000559873 MICALL2Q8IY33 904 aa12.28□□□□□ -0.44
USP3-216ENST00000559873 LNPKQ9C0E8 428 aa12.28□□□□□ -0.44
USP3-216ENST00000559873 HMG20BQ9P0W2 317 aa12.28□□□□□ -0.44
USP3-216ENST00000559873 ZBTB12Q9Y330 459 aaPredicted RBP12.28□□□□□ -0.44
USP3-216ENST00000559873 GLRX3O76003 335 aaKnown RBP12.27□□□□□ -0.45
USP3-216ENST00000559873 LDHBP07195 334 aaKnown RBP12.27□□□□□ -0.45
USP3-216ENST00000559873 ATP5JP18859 108 aa12.27□□□□□ -0.45
USP3-216ENST00000559873 SLF2Q8IX21 1173 aa12.27□□□□□ -0.45
USP3-216ENST00000559873 C16orf71Q8IYS4 520 aaPredicted RBP12.27□□□□□ -0.45
USP3-216ENST00000559873 ADARB2Q9NS39 739 aaKnown RBP12.27□□□□□ -0.45
USP3-216ENST00000559873 ABCF2Q9UG63 623 aa12.27□□□□□ -0.45
USP3-216ENST00000559873 CNOT7Q9UIV1 285 aaKnown RBP12.27□□□□□ -0.45
USP3-216ENST00000559873 TTF2Q9UNY4 1162 aaKnown RBP12.27□□□□□ -0.45
USP3-216ENST00000559873 ZNF646O15015 1829 aaPredicted RBP12.26□□□□□ -0.45
USP3-216ENST00000559873 EPHX2P34913 555 aa12.26□□□□□ -0.45
USP3-216ENST00000559873 TMED8Q6PL24 325 aaPredicted RBP12.26□□□□□ -0.45
USP3-216ENST00000559873 ERICH6Q7L0X2 663 aa12.26□□□□□ -0.45
USP3-216ENST00000559873 DZIP1Q86YF9 867 aaKnown RBP12.26□□□□□ -0.45
USP3-216ENST00000559873 ZNF784Q8NCA9 323 aaPredicted RBP12.26□□□□□ -0.45
USP3-216ENST00000559873 GMLQ99445 158 aa12.26□□□□□ -0.45
USP3-216ENST00000559873 DNAJC2Q99543 621 aaKnown RBP12.26□□□□□ -0.45
USP3-216ENST00000559873 LRP2BPQ9P2M1 347 aa12.26□□□□□ -0.45
USP3-216ENST00000559873 AOX1Q06278 1338 aa12.26□□□□□ -0.45
USP3-216ENST00000559873 MAST2Q6P0Q8 1798 aa12.25□□□□□ -0.45
USP3-216ENST00000559873 F8W031 263 aaPredicted RBP12.25□□□□□ -0.45
USP3-216ENST00000559873 ZNF280AP59817 542 aaPredicted RBP12.25□□□□□ -0.45
USP3-216ENST00000559873 GSTO1P78417 241 aa12.25□□□□□ -0.45
USP3-216ENST00000559873 HDLBPQ00341 1268 aaKnown RBP12.25□□□□□ -0.45
USP3-216ENST00000559873 SCARF1Q14162 830 aa12.25□□□□□ -0.45
USP3-216ENST00000559873 KIF4BQ2VIQ3 1234 aa12.25□□□□□ -0.45
USP3-216ENST00000559873 LRRFIP1Q32MZ4 808 aaKnown RBP12.25□□□□□ -0.45
USP3-216ENST00000559873 USP50Q70EL3 339 aaPredicted RBP12.25□□□□□ -0.45
USP3-216ENST00000559873 CERS5Q8N5B7 392 aa12.25□□□□□ -0.45
USP3-216ENST00000559873 TEKT1Q969V4 418 aa12.25□□□□□ -0.45
USP3-216ENST00000559873 MXD3Q9BW11 206 aa12.25□□□□□ -0.45
USP3-216ENST00000559873 TAF1DQ9H5J8 278 aaPredicted RBP12.25□□□□□ -0.45
USP3-216ENST00000559873 RRAGCQ9HB90 399 aa12.25□□□□□ -0.45
USP3-216ENST00000559873 MYOZ2Q9NPC6 264 aa12.25□□□□□ -0.45
USP3-216ENST00000559873 NMRK2Q9NPI5 230 aa12.25□□□□□ -0.45
USP3-216ENST00000559873 SNRKQ9NRH2 765 aa12.25□□□□□ -0.45
USP3-216ENST00000559873 PAG1Q9NWQ8 432 aa12.25□□□□□ -0.45
USP3-216ENST00000559873 RAI14Q9P0K7 980 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 143.1 ms