RNA–Protein interactions for RNA: ENST00000559718.1

USP3-214, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 757 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-214ENST00000559718 MCOLN1Q9GZU1 580 aa14.8□□□□□ -0.04
USP3-214ENST00000559718 IRS2Q9Y4H2 1338 aa14.8□□□□□ -0.04
USP3-214ENST00000559718 CCDC85CA6NKD9 419 aa14.79□□□□□ -0.04
USP3-214ENST00000559718 IFIT5Q13325 482 aaKnown RBP14.79□□□□□ -0.04
USP3-214ENST00000559718 LMBR1LQ6UX01 489 aa14.79□□□□□ -0.04
USP3-214ENST00000559718 RASAL3Q86YV0 1011 aa14.79□□□□□ -0.04
USP3-214ENST00000559718 MYO3BQ8WXR4 1341 aa14.79□□□□□ -0.04
USP3-214ENST00000559718 ZNF594Q96JF6 807 aaPredicted RBP14.79□□□□□ -0.04
USP3-214ENST00000559718 CSRNP1Q96S65 589 aa14.79□□□□□ -0.04
USP3-214ENST00000559718 CD209Q9NNX6 404 aa14.79□□□□□ -0.04
USP3-214ENST00000559718 PAPPA2Q9BXP8 1791 aa14.78□□□□□ -0.04
USP3-214ENST00000559718 UBE2Q2LH0YL09 131 aa14.78□□□□□ -0.04
USP3-214ENST00000559718 TRPA1O75762 1119 aa14.78□□□□□ -0.04
USP3-214ENST00000559718 RNF186Q9NXI6 227 aa14.78□□□□□ -0.04
USP3-214ENST00000559718 GRM8O00222 908 aa14.77□□□□□ -0.05
USP3-214ENST00000559718 FKBP1BP68106 108 aa14.77□□□□□ -0.05
USP3-214ENST00000559718 DGKZQ13574 1117 aa14.77□□□□□ -0.05
USP3-214ENST00000559718 SLC4A10Q6U841 1118 aa14.77□□□□□ -0.05
USP3-214ENST00000559718 CERS5Q8N5B7 392 aa14.77□□□□□ -0.05
USP3-214ENST00000559718 A0A1B0GUL6 1792 aa14.77□□□□□ -0.05
USP3-214ENST00000559718 PLIN1O60240 522 aa14.76□□□□□ -0.05
USP3-214ENST00000559718 C15orf52Q6ZUT6 534 aaKnown RBP14.76□□□□□ -0.05
USP3-214ENST00000559718 ZBED3Q96IU2 234 aaPredicted RBP14.76□□□□□ -0.05
USP3-214ENST00000559718 SAGE1Q9NXZ1 904 aa14.76□□□□□ -0.05
USP3-214ENST00000559718 JAG2Q9Y219 1238 aa14.76□□□□□ -0.05
USP3-214ENST00000559718 PCDHAC2Q9Y5I4 1007 aa14.76□□□□□ -0.05
USP3-214ENST00000559718 ZNF521Q96K83 1311 aa14.75□□□□□ -0.05
USP3-214ENST00000559718 AKAP11Q9UKA4 1901 aa14.75□□□□□ -0.05
USP3-214ENST00000559718 TTLL12Q14166 644 aaPredicted RBP14.75□□□□□ -0.05
USP3-214ENST00000559718 CCDC57Q2TAC2 916 aa14.75□□□□□ -0.05
USP3-214ENST00000559718 SUCLG2Q96I99 432 aa14.75□□□□□ -0.05
USP3-214ENST00000559718 C9orf78Q9NZ63 289 aaPredicted RBP14.75□□□□□ -0.05
USP3-214ENST00000559718 HDAC9Q9UKV0 1011 aa14.75□□□□□ -0.05
USP3-214ENST00000559718 F8W031 263 aaPredicted RBP14.74□□□□□ -0.05
USP3-214ENST00000559718 ALDH1L1O75891 902 aa14.74□□□□□ -0.05
USP3-214ENST00000559718 IL1R1P14778 569 aa14.74□□□□□ -0.05
USP3-214ENST00000559718 CD44P16070 742 aaKnown RBP14.74□□□□□ -0.05
USP3-214ENST00000559718 PRKG1Q13976 671 aa14.74□□□□□ -0.05
USP3-214ENST00000559718 TAF7LQ5H9L4 462 aa14.74□□□□□ -0.05
USP3-214ENST00000559718 LDHAL6AQ6ZMR3 332 aa14.74□□□□□ -0.05
USP3-214ENST00000559718 KAZALD1Q96I82 304 aa14.74□□□□□ -0.05
USP3-214ENST00000559718 SRCIN1Q9C0H9 1055 aa14.74□□□□□ -0.05
USP3-214ENST00000559718 NBPF7P0C2Y1 421 aaPredicted RBP14.73□□□□□ -0.05
USP3-214ENST00000559718 MKRN3Q13064 507 aaKnown RBP14.73□□□□□ -0.05
USP3-214ENST00000559718 ZNF804AQ7Z570 1209 aa14.73□□□□□ -0.05
USP3-214ENST00000559718 APOBEC3FQ8IUX4 373 aaKnown RBP14.73□□□□□ -0.05
USP3-214ENST00000559718 PUS3Q9BZE2 481 aaKnown RBP14.73□□□□□ -0.05
USP3-214ENST00000559718 CNNM1Q9NRU3 951 aa14.73□□□□□ -0.05
USP3-214ENST00000559718 FZD1Q9UP38 647 aa14.73□□□□□ -0.05
USP3-214ENST00000559718 AOX1Q06278 1338 aa14.72□□□□□ -0.05
USP3-214ENST00000559718 NF2P35240 595 aa14.72□□□□□ -0.05
USP3-214ENST00000559718 MMP14P50281 582 aa14.72□□□□□ -0.05
USP3-214ENST00000559718 PTPN12Q05209 780 aaKnown RBP14.72□□□□□ -0.05
USP3-214ENST00000559718 DLGAP5Q15398 846 aa14.72□□□□□ -0.05
USP3-214ENST00000559718 CFAP100Q494V2 611 aa14.71□□□□□ -0.05
USP3-214ENST00000559718 MRPL50Q8N5N7 158 aaKnown RBP14.71□□□□□ -0.05
USP3-214ENST00000559718 DEFB129Q9H1M3 183 aa14.71□□□□□ -0.05
USP3-214ENST00000559718 CLRN2A0PK11 232 aa14.7□□□□□ -0.06
USP3-214ENST00000559718 TBC1D8O95759 1140 aa14.7□□□□□ -0.06
USP3-214ENST00000559718 GYG1P46976 350 aa14.7□□□□□ -0.06
USP3-214ENST00000559718 ARMC9Q7Z3E5 817 aa14.7□□□□□ -0.06
USP3-214ENST00000559718 MTMR14Q8NCE2 650 aa14.7□□□□□ -0.06
USP3-214ENST00000559718 PRMT6Q96LA8 375 aaPredicted RBP14.7□□□□□ -0.06
USP3-214ENST00000559718 BICC1Q9H694 974 aaKnown RBP14.7□□□□□ -0.06
USP3-214ENST00000559718 ANGEL1Q9UNK9 670 aaKnown RBP14.7□□□□□ -0.06
USP3-214ENST00000559718 UTYO14607 1347 aa14.69□□□□□ -0.06
USP3-214ENST00000559718 RGS19P49795 217 aa14.69□□□□□ -0.06
USP3-214ENST00000559718 FKBP1AP62942 108 aaKnown RBP14.69□□□□□ -0.06
USP3-214ENST00000559718 LDLRAD1Q5T700 205 aa14.69□□□□□ -0.06
USP3-214ENST00000559718 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.69□□□□□ -0.06
USP3-214ENST00000559718 RIPOR2Q9Y4F9 1068 aa14.69□□□□□ -0.06
USP3-214ENST00000559718 SSC5DA1L4H1 1573 aa14.68□□□□□ -0.06
USP3-214ENST00000559718 GABBR2O75899 941 aa14.68□□□□□ -0.06
USP3-214ENST00000559718 MLLT1Q03111 559 aaPredicted RBP14.68□□□□□ -0.06
USP3-214ENST00000559718 UBE4AQ14139 1066 aa14.68□□□□□ -0.06
USP3-214ENST00000559718 ANKRD44Q8N8A2 993 aa14.68□□□□□ -0.06
USP3-214ENST00000559718 TDRD7Q8NHU6 1098 aaKnown RBP14.68□□□□□ -0.06
USP3-214ENST00000559718 SSH1Q8WYL5 1049 aa14.68□□□□□ -0.06
USP3-214ENST00000559718 FAM84BQ96KN1 310 aaPredicted RBP14.68□□□□□ -0.06
USP3-214ENST00000559718 FAM205AQ6ZU69 1335 aa14.67□□□□□ -0.06
USP3-214ENST00000559718 HIBADHP31937 336 aaKnown RBP14.67□□□□□ -0.06
USP3-214ENST00000559718 TM4SF4P48230 202 aa14.67□□□□□ -0.06
USP3-214ENST00000559718 RBM5P52756 815 aaKnown RBP eCLIP14.67□□□□□ -0.06
USP3-214ENST00000559718 RABL6Q3YEC7 729 aaPredicted RBP14.67□□□□□ -0.06
USP3-214ENST00000559718 LRRC24Q50LG9 513 aa14.67□□□□□ -0.06
USP3-214ENST00000559718 MFSD14BQ5SR56 506 aa14.67□□□□□ -0.06
USP3-214ENST00000559718 SPRYD7Q5W111 196 aa14.67□□□□□ -0.06
USP3-214ENST00000559718 CLMNQ96JQ2 1002 aa14.67□□□□□ -0.06
USP3-214ENST00000559718 VEZTQ9HBM0 779 aa14.67□□□□□ -0.06
USP3-214ENST00000559718 COL1A1P02452 1464 aaPredicted RBP14.67□□□□□ -0.06
USP3-214ENST00000559718 ECM29Q5VYK3 1845 aa14.66□□□□□ -0.06
USP3-214ENST00000559718 E9PSI1 815 aa14.66□□□□□ -0.06
USP3-214ENST00000559718 MYO1BO43795 1136 aa14.66□□□□□ -0.06
USP3-214ENST00000559718 GRIK5Q16478 980 aa14.66□□□□□ -0.06
USP3-214ENST00000559718 NBPF12Q5TAG4 269 aaPredicted RBP14.66□□□□□ -0.06
USP3-214ENST00000559718 CTU1Q7Z7A3 348 aaKnown RBP14.66□□□□□ -0.06
USP3-214ENST00000559718 KLHDC4Q8TBB5 520 aa14.66□□□□□ -0.06
USP3-214ENST00000559718 ZNF296Q8WUU4 475 aaPredicted RBP14.66□□□□□ -0.06
USP3-214ENST00000559718 R3HDMLQ9H3Y0 253 aa14.66□□□□□ -0.06
USP3-214ENST00000559718 IQSEC3Q9UPP2 1182 aaPredicted RBP14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms