RNA–Protein interactions for RNA: ENST00000555221.3

CKS1BP1-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 1, humanhuman

BASIC

Gene CKS1BP1, Length 240 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP1-201ENST00000555221 ZNF394Q53GI3 561 aa8.61□□□□□ -1.03
CKS1BP1-201ENST00000555221 NAALADL2Q58DX5 795 aa8.61□□□□□ -1.03
CKS1BP1-201ENST00000555221 GDF6Q6KF10 455 aaPredicted RBP8.61□□□□□ -1.03
CKS1BP1-201ENST00000555221 RELL1Q8IUW5 271 aa8.61□□□□□ -1.03
CKS1BP1-201ENST00000555221 NUDT8Q8WV74 236 aa8.61□□□□□ -1.03
CKS1BP1-201ENST00000555221 EDARADDQ8WWZ3 215 aa8.61□□□□□ -1.03
CKS1BP1-201ENST00000555221 NECAB3Q96P71 396 aaPredicted RBP8.61□□□□□ -1.03
CKS1BP1-201ENST00000555221 JPH1Q9HDC5 661 aaPredicted RBP8.61□□□□□ -1.03
CKS1BP1-201ENST00000555221 TMEM39AQ9NV64 488 aa8.61□□□□□ -1.03
CKS1BP1-201ENST00000555221 GPN3Q9UHW5 284 aaPredicted RBP8.61□□□□□ -1.03
CKS1BP1-201ENST00000555221 SLURP2P0DP57 97 aa8.6□□□□□ -1.03
CKS1BP1-201ENST00000555221 PCDH1Q08174 1060 aa8.6□□□□□ -1.03
CKS1BP1-201ENST00000555221 VN1R5Q7Z5H4 357 aa8.6□□□□□ -1.03
CKS1BP1-201ENST00000555221 DDX54Q8TDD1 881 aaKnown RBP8.6□□□□□ -1.03
CKS1BP1-201ENST00000555221 SRA1Q9HD15 236 aaKnown RBP8.6□□□□□ -1.03
CKS1BP1-201ENST00000555221 STARD13Q9Y3M8 1113 aa8.6□□□□□ -1.03
CKS1BP1-201ENST00000555221 SAMM50Q9Y512 469 aa8.6□□□□□ -1.03
CKS1BP1-201ENST00000555221 PCDHGB7Q9Y5F8 929 aa8.6□□□□□ -1.03
CKS1BP1-201ENST00000555221 OIP5O43482 229 aa8.59□□□□□ -1.03
CKS1BP1-201ENST00000555221 EIF4EBP3O60516 100 aaPredicted RBP8.59□□□□□ -1.03
CKS1BP1-201ENST00000555221 LILRB5O75023 590 aa8.59□□□□□ -1.03
CKS1BP1-201ENST00000555221 B3GALT4O96024 378 aa8.59□□□□□ -1.03
CKS1BP1-201ENST00000555221 RACK1P63244 317 aaKnown RBP8.59□□□□□ -1.03
CKS1BP1-201ENST00000555221 MAP3K10Q02779 954 aa8.59□□□□□ -1.03
CKS1BP1-201ENST00000555221 FAAP100Q0VG06 881 aa8.59□□□□□ -1.03
CKS1BP1-201ENST00000555221 C20orf204Q6ZNR8 217 aa8.59□□□□□ -1.03
CKS1BP1-201ENST00000555221 GALNT6Q8NCL4 622 aa8.59□□□□□ -1.03
CKS1BP1-201ENST00000555221 KBTBD4Q9NVX7 518 aa8.59□□□□□ -1.03
CKS1BP1-201ENST00000555221 ENC1O14682 589 aa8.58□□□□□ -1.04
CKS1BP1-201ENST00000555221 ALBP02768 609 aa8.58□□□□□ -1.04
CKS1BP1-201ENST00000555221 CELA3AP09093 270 aa8.58□□□□□ -1.04
CKS1BP1-201ENST00000555221 BCRP11274 1271 aa8.58□□□□□ -1.04
CKS1BP1-201ENST00000555221 IKBKEQ14164 716 aa8.58□□□□□ -1.04
CKS1BP1-201ENST00000555221 TMEM74Q96NL1 305 aa8.58□□□□□ -1.04
CKS1BP1-201ENST00000555221 ACBD3Q9H3P7 528 aa8.58□□□□□ -1.04
CKS1BP1-201ENST00000555221 COPRSQ9NQ92 184 aa8.58□□□□□ -1.04
CKS1BP1-201ENST00000555221 SH2B1Q9NRF2 756 aaPredicted RBP8.58□□□□□ -1.04
CKS1BP1-201ENST00000555221 H3BRJ5 948 aa8.57□□□□□ -1.04
CKS1BP1-201ENST00000555221 M0R082 166 aa8.57□□□□□ -1.04
CKS1BP1-201ENST00000555221 ESRRAP11474 423 aaPredicted RBP8.57□□□□□ -1.04
CKS1BP1-201ENST00000555221 GBP2P32456 591 aaPredicted RBP8.57□□□□□ -1.04
CKS1BP1-201ENST00000555221 LIG3P49916 1009 aa8.57□□□□□ -1.04
CKS1BP1-201ENST00000555221 SF3A1Q15459 793 aaKnown RBP8.57□□□□□ -1.04
CKS1BP1-201ENST00000555221 C1orf229Q6ZS94 237 aaPredicted RBP8.57□□□□□ -1.04
CKS1BP1-201ENST00000555221 CHSY3Q70JA7 882 aa8.57□□□□□ -1.04
CKS1BP1-201ENST00000555221 IL22RA1Q8N6P7 574 aa8.57□□□□□ -1.04
CKS1BP1-201ENST00000555221 ZNF417Q8TAU3 575 aa8.57□□□□□ -1.04
CKS1BP1-201ENST00000555221 SREK1Q8WXA9 508 aaKnown RBP8.57□□□□□ -1.04
CKS1BP1-201ENST00000555221 ZNF587Q96SQ5 575 aaPredicted RBP8.57□□□□□ -1.04
CKS1BP1-201ENST00000555221 TRIM56Q9BRZ2 755 aaKnown RBP8.57□□□□□ -1.04
CKS1BP1-201ENST00000555221 CAPN10Q9HC96 672 aa8.57□□□□□ -1.04
CKS1BP1-201ENST00000555221 PRDM6Q9NQX0 595 aa8.57□□□□□ -1.04
CKS1BP1-201ENST00000555221 INPP5FQ9Y2H2 1132 aa8.57□□□□□ -1.04
CKS1BP1-201ENST00000555221 PPME1Q9Y570 386 aa8.57□□□□□ -1.04
CKS1BP1-201ENST00000555221 EPHA1P21709 976 aa8.56□□□□□ -1.04
CKS1BP1-201ENST00000555221 AMPD1P23109 780 aa8.56□□□□□ -1.04
CKS1BP1-201ENST00000555221 AFF1P51825 1210 aaKnown RBP8.56□□□□□ -1.04
CKS1BP1-201ENST00000555221 RPS26P62854 115 aaKnown RBP8.56□□□□□ -1.04
CKS1BP1-201ENST00000555221 GRIK5Q16478 980 aa8.56□□□□□ -1.04
CKS1BP1-201ENST00000555221 MAP3K11Q16584 847 aa8.56□□□□□ -1.04
CKS1BP1-201ENST00000555221 ZNF423Q2M1K9 1284 aa8.56□□□□□ -1.04
CKS1BP1-201ENST00000555221 TTBK2Q6IQ55 1244 aa8.56□□□□□ -1.04
CKS1BP1-201ENST00000555221 FAM117BQ6P1L5 589 aa8.56□□□□□ -1.04
CKS1BP1-201ENST00000555221 ADAMTSL4Q6UY14 1074 aa8.56□□□□□ -1.04
CKS1BP1-201ENST00000555221 SLC43A3Q8NBI5 491 aa8.56□□□□□ -1.04
CKS1BP1-201ENST00000555221 WNT8BQ93098 351 aa8.56□□□□□ -1.04
CKS1BP1-201ENST00000555221 BTBD6Q96KE9 485 aa8.56□□□□□ -1.04
CKS1BP1-201ENST00000555221 TINF2Q9BSI4 451 aa8.56□□□□□ -1.04
CKS1BP1-201ENST00000555221 WFS1O76024 890 aa8.55□□□□□ -1.04
CKS1BP1-201ENST00000555221 ARL4DP49703 201 aa8.55□□□□□ -1.04
CKS1BP1-201ENST00000555221 WFDC8Q8IUA0 241 aa8.55□□□□□ -1.04
CKS1BP1-201ENST00000555221 PHC3Q8NDX5 983 aa8.55□□□□□ -1.04
CKS1BP1-201ENST00000555221 SOX17Q9H6I2 414 aaPredicted RBP8.55□□□□□ -1.04
CKS1BP1-201ENST00000555221 USP35Q9P2H5 1018 aa8.55□□□□□ -1.04
CKS1BP1-201ENST00000555221 MINDY4BA8MYZ0 360 aa8.54□□□□□ -1.04
CKS1BP1-201ENST00000555221 LMNB1P20700 586 aa8.54□□□□□ -1.04
CKS1BP1-201ENST00000555221 NME2P22392 152 aa8.54□□□□□ -1.04
CKS1BP1-201ENST00000555221 GMPRP36959 345 aa8.54□□□□□ -1.04
CKS1BP1-201ENST00000555221 EIF4A3P38919 411 aaKnown RBP8.54□□□□□ -1.04
CKS1BP1-201ENST00000555221 ZNF157P51786 506 aaPredicted RBP8.54□□□□□ -1.04
CKS1BP1-201ENST00000555221 PIP4K2BP78356 416 aa8.54□□□□□ -1.04
CKS1BP1-201ENST00000555221 PCNX4Q63HM2 1172 aa8.54□□□□□ -1.04
CKS1BP1-201ENST00000555221 AGMOQ6ZNB7 445 aa8.54□□□□□ -1.04
CKS1BP1-201ENST00000555221 KIAA0825Q8IV33 1275 aa8.54□□□□□ -1.04
CKS1BP1-201ENST00000555221 SPON2Q9BUD6 331 aa8.54□□□□□ -1.04
CKS1BP1-201ENST00000555221 EMILIN2Q9BXX0 1053 aa8.54□□□□□ -1.04
CKS1BP1-201ENST00000555221 SHISA8B8ZZ34 492 aa8.53□□□□□ -1.04
CKS1BP1-201ENST00000555221 PAGE1O75459 146 aa8.53□□□□□ -1.04
CKS1BP1-201ENST00000555221 CELA2BP08218 269 aaPredicted RBP8.53□□□□□ -1.04
CKS1BP1-201ENST00000555221 BAG6P46379 1132 aa8.53□□□□□ -1.04
CKS1BP1-201ENST00000555221 LMNB2Q03252 620 aa8.53□□□□□ -1.04
CKS1BP1-201ENST00000555221 AP3B2Q13367 1082 aa8.53□□□□□ -1.04
CKS1BP1-201ENST00000555221 LRRC14Q15048 493 aa8.53□□□□□ -1.04
CKS1BP1-201ENST00000555221 DIEXFQ68CQ4 756 aaKnown RBP8.53□□□□□ -1.04
CKS1BP1-201ENST00000555221 MSL1Q68DK7 614 aa8.53□□□□□ -1.04
CKS1BP1-201ENST00000555221 VPS37DQ86XT2 251 aa8.53□□□□□ -1.04
CKS1BP1-201ENST00000555221 SULF2Q8IWU5 870 aa8.53□□□□□ -1.04
CKS1BP1-201ENST00000555221 RHOVQ96L33 236 aa8.53□□□□□ -1.04
CKS1BP1-201ENST00000555221 DRC1Q96MC2 740 aa8.53□□□□□ -1.04
CKS1BP1-201ENST00000555221 OSGEPQ9NPF4 335 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms