RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 HOMER1Q86YM7 354 aa8.12□□□□□ -1.11
SCFD1-208ENST00000553278 TRIM42Q8IWZ5 723 aa8.12□□□□□ -1.11
SCFD1-208ENST00000553278 OR6P1Q8NGX9 317 aa8.12□□□□□ -1.11
SCFD1-208ENST00000553278 TRPM4Q8TD43 1214 aa8.12□□□□□ -1.11
SCFD1-208ENST00000553278 CNTNAP3BQ96NU0 1288 aa8.12□□□□□ -1.11
SCFD1-208ENST00000553278 FERD3LQ96RJ6 166 aa8.12□□□□□ -1.11
SCFD1-208ENST00000553278 DNAJC7Q99615 494 aa8.12□□□□□ -1.11
SCFD1-208ENST00000553278 LRRC3Q9BY71 257 aa8.12□□□□□ -1.11
SCFD1-208ENST00000553278 CNTNAP3Q9BZ76 1288 aa8.12□□□□□ -1.11
SCFD1-208ENST00000553278 EFCC1Q9HA90 598 aa8.12□□□□□ -1.11
SCFD1-208ENST00000553278 DZANK1Q9NVP4 752 aa8.12□□□□□ -1.11
SCFD1-208ENST00000553278 TLR7Q9NYK1 1049 aaKnown RBP8.12□□□□□ -1.11
SCFD1-208ENST00000553278 ACTR10Q9NZ32 417 aa8.12□□□□□ -1.11
SCFD1-208ENST00000553278 MSRB2Q9Y3D2 182 aa8.12□□□□□ -1.11
SCFD1-208ENST00000553278 MCM4P33991 863 aa8.11□□□□□ -1.11
SCFD1-208ENST00000553278 ZNF165P49910 485 aa8.11□□□□□ -1.11
SCFD1-208ENST00000553278 PLAURQ03405 335 aa8.11□□□□□ -1.11
SCFD1-208ENST00000553278 SFSWAPQ12872 951 aaKnown RBP8.11□□□□□ -1.11
SCFD1-208ENST00000553278 LBRQ14739 615 aaKnown RBP8.11□□□□□ -1.11
SCFD1-208ENST00000553278 DDR2Q16832 855 aa8.11□□□□□ -1.11
SCFD1-208ENST00000553278 CWF19L2Q2TBE0 894 aaKnown RBP8.11□□□□□ -1.11
SCFD1-208ENST00000553278 ARSHQ5FYA8 562 aa8.11□□□□□ -1.11
SCFD1-208ENST00000553278 FBXW10Q5XX13 1052 aa8.11□□□□□ -1.11
SCFD1-208ENST00000553278 MRPL14Q6P1L8 145 aaKnown RBP8.11□□□□□ -1.11
SCFD1-208ENST00000553278 GAS2L1Q99501 681 aaPredicted RBP8.11□□□□□ -1.11
SCFD1-208ENST00000553278 SEC31BQ9NQW1 1179 aa8.11□□□□□ -1.11
SCFD1-208ENST00000553278 GPN3Q9UHW5 284 aaPredicted RBP8.11□□□□□ -1.11
SCFD1-208ENST00000553278 SAMM50Q9Y512 469 aa8.11□□□□□ -1.11
SCFD1-208ENST00000553278 A0A096LPE4 126 aa8.1□□□□□ -1.11
SCFD1-208ENST00000553278 A0A1W2PPZ6 126 aa8.1□□□□□ -1.11
SCFD1-208ENST00000553278 ATXN7O15265 892 aaPredicted RBP8.1□□□□□ -1.11
SCFD1-208ENST00000553278 TLR3O15455 904 aaKnown RBP8.1□□□□□ -1.11
SCFD1-208ENST00000553278 F13A1P00488 732 aa8.1□□□□□ -1.11
SCFD1-208ENST00000553278 NFKB1P19838 968 aa8.1□□□□□ -1.11
SCFD1-208ENST00000553278 GIPRP48546 466 aa8.1□□□□□ -1.11
SCFD1-208ENST00000553278 SCARF1Q14162 830 aa8.1□□□□□ -1.11
SCFD1-208ENST00000553278 SPRED3Q2MJR0 410 aa8.1□□□□□ -1.11
SCFD1-208ENST00000553278 CEP120Q8N960 986 aa8.1□□□□□ -1.11
SCFD1-208ENST00000553278 GATAD2BQ8WXI9 593 aa8.1□□□□□ -1.11
SCFD1-208ENST00000553278 BHLHE41Q9C0J9 482 aaPredicted RBP8.1□□□□□ -1.11
SCFD1-208ENST00000553278 MIR1-1HGQ9H1L0 117 aa8.1□□□□□ -1.11
SCFD1-208ENST00000553278 ZFATQ9P243 1243 aa8.1□□□□□ -1.11
SCFD1-208ENST00000553278 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.1□□□□□ -1.11
SCFD1-208ENST00000553278 FIGNL2A6NMB9 653 aa8.09□□□□□ -1.11
SCFD1-208ENST00000553278 PDPK1O15530 556 aa8.09□□□□□ -1.11
SCFD1-208ENST00000553278 EFSO43281 561 aa8.09□□□□□ -1.11
SCFD1-208ENST00000553278 MAP3K6O95382 1288 aa8.09□□□□□ -1.11
SCFD1-208ENST00000553278 IMPDH2P12268 514 aa8.09□□□□□ -1.11
SCFD1-208ENST00000553278 HOXD8P13378 290 aaPredicted RBP8.09□□□□□ -1.11
SCFD1-208ENST00000553278 PPP2R3AQ06190 1150 aa8.09□□□□□ -1.11
SCFD1-208ENST00000553278 LAMC2Q13753 1193 aa8.09□□□□□ -1.11
SCFD1-208ENST00000553278 RASGRF1Q13972 1273 aa8.09□□□□□ -1.11
SCFD1-208ENST00000553278 MPP2Q14168 576 aa8.09□□□□□ -1.11
SCFD1-208ENST00000553278 COL13A1Q5TAT6 717 aaPredicted RBP8.09□□□□□ -1.11
SCFD1-208ENST00000553278 ZNF787Q6DD87 383 aa8.09□□□□□ -1.11
SCFD1-208ENST00000553278 BNC2Q6ZN30 1099 aaPredicted RBP8.09□□□□□ -1.11
SCFD1-208ENST00000553278 LILRB2Q8N423 598 aa8.09□□□□□ -1.11
SCFD1-208ENST00000553278 CELF2-AS1Q8N7Q2 184 aa8.09□□□□□ -1.11
SCFD1-208ENST00000553278 TMEM102Q8N9M5 508 aaPredicted RBP8.09□□□□□ -1.11
SCFD1-208ENST00000553278 ST7Q9NRC1 585 aa8.09□□□□□ -1.11
SCFD1-208ENST00000553278 ARID4BQ4LE39 1312 aaPredicted RBP8.08□□□□□ -1.12
SCFD1-208ENST00000553278 ESYT3A0FGR9 886 aa8.08□□□□□ -1.12
SCFD1-208ENST00000553278 KHNYNO15037 678 aaKnown RBP8.08□□□□□ -1.12
SCFD1-208ENST00000553278 ACPPP15309 386 aa8.08□□□□□ -1.12
SCFD1-208ENST00000553278 FXNQ16595 210 aa8.08□□□□□ -1.12
SCFD1-208ENST00000553278 REXO1Q8N1G1 1221 aaKnown RBP8.08□□□□□ -1.12
SCFD1-208ENST00000553278 FAM169BQ8N8A8 192 aa8.08□□□□□ -1.12
SCFD1-208ENST00000553278 ASAP3Q8TDY4 903 aa8.08□□□□□ -1.12
SCFD1-208ENST00000553278 JARID2Q92833 1246 aaPredicted RBP8.08□□□□□ -1.12
SCFD1-208ENST00000553278 NXPE3Q969Y0 559 aa8.08□□□□□ -1.12
SCFD1-208ENST00000553278 ZNF576Q9H609 170 aa8.08□□□□□ -1.12
SCFD1-208ENST00000553278 TMEM39AQ9NV64 488 aa8.08□□□□□ -1.12
SCFD1-208ENST00000553278 KLHL42Q9P2K6 505 aa8.08□□□□□ -1.12
SCFD1-208ENST00000553278 MAPK8IP1Q9UQF2 711 aa8.08□□□□□ -1.12
SCFD1-208ENST00000553278 PCDHGC4Q9Y5F7 938 aa8.08□□□□□ -1.12
SCFD1-208ENST00000553278 METTL12A8MUP2 240 aa8.07□□□□□ -1.12
SCFD1-208ENST00000553278 PAGE1O75459 146 aa8.07□□□□□ -1.12
SCFD1-208ENST00000553278 TRPA1O75762 1119 aa8.07□□□□□ -1.12
SCFD1-208ENST00000553278 TRIM37O94972 964 aa8.07□□□□□ -1.12
SCFD1-208ENST00000553278 BPNT1O95861 308 aa8.07□□□□□ -1.12
SCFD1-208ENST00000553278 CCDC181Q5TID7 509 aa8.07□□□□□ -1.12
SCFD1-208ENST00000553278 FBXO27Q8NI29 283 aa8.07□□□□□ -1.12
SCFD1-208ENST00000553278 ZNF775Q96BV0 537 aaPredicted RBP8.07□□□□□ -1.12
SCFD1-208ENST00000553278 SOS2Q07890 1332 aaPredicted RBP8.06□□□□□ -1.12
SCFD1-208ENST00000553278 DCDC2BA2VCK2 349 aa8.06□□□□□ -1.12
SCFD1-208ENST00000553278 PDE2AO00408 941 aaPredicted RBP8.06□□□□□ -1.12
SCFD1-208ENST00000553278 PRR20EP86478 221 aa8.06□□□□□ -1.12
SCFD1-208ENST00000553278 PRR20CP86479 221 aa8.06□□□□□ -1.12
SCFD1-208ENST00000553278 PRR20DP86480 221 aa8.06□□□□□ -1.12
SCFD1-208ENST00000553278 PRR20BP86481 221 aa8.06□□□□□ -1.12
SCFD1-208ENST00000553278 PRR20AP86496 221 aa8.06□□□□□ -1.12
SCFD1-208ENST00000553278 LARP1BQ659C4 914 aaKnown RBP8.06□□□□□ -1.12
SCFD1-208ENST00000553278 C16orf86Q6ZW13 317 aa8.06□□□□□ -1.12
SCFD1-208ENST00000553278 DHX32Q7L7V1 743 aaKnown RBP8.06□□□□□ -1.12
SCFD1-208ENST00000553278 KIAA0907Q7Z7F0 614 aaPredicted RBP8.06□□□□□ -1.12
SCFD1-208ENST00000553278 KANSL2Q9H9L4 492 aa8.06□□□□□ -1.12
SCFD1-208ENST00000553278 TMEM260Q9NX78 707 aa8.06□□□□□ -1.12
SCFD1-208ENST00000553278 ZNRF3Q9ULT6 936 aa8.06□□□□□ -1.12
SCFD1-208ENST00000553278 FAM221AA4D161 298 aa8.05□□□□□ -1.12
SCFD1-208ENST00000553278 NRG2O14511 850 aaPredicted RBP8.05□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms