RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 PTPDC1A2A3K4 754 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 GOLGA6L19H0YKK7 550 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 GCP02774 474 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 STX1AQ16623 288 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 KMT5BQ4FZB7 885 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 MCMDC2Q4G0Z9 681 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 TMEM92Q6UXU6 159 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 ANKRD13DQ6ZTN6 518 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 CHST3Q7LGC8 479 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 NBPF11Q86T75 865 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 METTL22Q9BUU2 404 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-212ENST00000552491 CFAP45Q9UL16 551 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 PAXBP1Q9Y5B6 917 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 NEDD4P46934 1319 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 SALL1Q9NSC2 1324 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 PHRF1Q9P1Y6 1649 aaKnown RBP6.35□□□□□ -1.39
LIMA1-212ENST00000552491 KDM4FA0A1W2PPD8 638 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 EXOSC10Q01780 885 aaKnown RBP6.35□□□□□ -1.39
LIMA1-212ENST00000552491 PSME1Q06323 249 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 ESCO1Q5FWF5 840 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 OTUD7BQ6GQQ9 843 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 ZNF790Q6PG37 636 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 AOPEPQ8N6M6 819 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 KIF18AQ8NI77 898 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 SYTL4Q96C24 671 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-212ENST00000552491 HAUS7Q99871 368 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 GPHNQ9NQX3 736 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-212ENST00000552491 RGPD5Q99666 1765 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 OVOS2A0A0G2JMS6 1433 aa6.35□□□□□ -1.39
LIMA1-212ENST00000552491 ATP5J2-PTCD1G3V325 749 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 PTCD1O75127 700 aaKnown RBP6.34□□□□□ -1.39
LIMA1-212ENST00000552491 KIF20AO95235 890 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 FDPSP14324 419 aaKnown RBP6.34□□□□□ -1.39
LIMA1-212ENST00000552491 NAA16Q6N069 864 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-212ENST00000552491 DHX32Q7L7V1 743 aaKnown RBP6.34□□□□□ -1.39
LIMA1-212ENST00000552491 UBE3BQ7Z3V4 1068 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 CCAR2Q8N163 923 aaKnown RBP6.34□□□□□ -1.39
LIMA1-212ENST00000552491 THEMISQ8N1K5 641 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-212ENST00000552491 FSIP1Q8NA03 581 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 KCNH5Q8NCM2 988 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 LRRN4CLQ8ND94 238 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 ZNF496Q96IT1 587 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-212ENST00000552491 LLPHQ9BRT6 129 aaKnown RBP6.34□□□□□ -1.39
LIMA1-212ENST00000552491 ADAMTS7Q9UKP4 1686 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 KDM6AO15550 1401 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-212ENST00000552491 A0A1B0GVL5 298 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 SLFN14P0C7P3 912 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 FGD1P98174 961 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 FAM160A1Q05DH4 1040 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 PTPN14Q15678 1187 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 ELF2Q15723 593 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 RABL6Q3YEC7 729 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-212ENST00000552491 TTLL5Q6EMB2 1281 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 GPR153Q6NV75 609 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 FBXO38Q6PIJ6 1188 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 FMR1NBQ8N0W7 255 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-212ENST00000552491 KBTBD3Q8NAB2 608 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 ORAI2Q96SN7 254 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 AGXT2Q9BYV1 514 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 GJB4Q9NTQ9 266 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 CGNQ9P2M7 1197 aaKnown RBP6.34□□□□□ -1.39
LIMA1-212ENST00000552491 PCDHA7Q9UN72 937 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 MORC2Q9Y6X9 1032 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-212ENST00000552491 ADAMTSL3P82987 1691 aa6.34□□□□□ -1.39
LIMA1-212ENST00000552491 AFDNP55196 1824 aaKnown RBP6.34□□□□□ -1.4
LIMA1-212ENST00000552491 BECN2A8MW95 431 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 GOLIM4O00461 696 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 CTAGE5O15320 804 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 NEMFO60524 1076 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 KINO60870 393 aaKnown RBP6.33□□□□□ -1.4
LIMA1-212ENST00000552491 PDIA3P30101 505 aaKnown RBP6.33□□□□□ -1.4
LIMA1-212ENST00000552491 CASP7P55210 303 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 NEXNQ0ZGT2 675 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 DPCR1Q3MIW9 517 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 E4F1Q66K89 784 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-212ENST00000552491 NFATC2IPQ8NCF5 419 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 ST7Q9NRC1 585 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 PALLDQ8WX93 1383 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 ABCC6O95255 1503 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 E7EWF7 191 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 NPHP1O15259 732 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 HSPD1P10809 573 aaKnown RBP6.33□□□□□ -1.4
LIMA1-212ENST00000552491 ME1P48163 572 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 NDUFA8P51970 172 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 TIMM10P62072 90 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 ARMCX5Q6P1M9 558 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 CCDC73Q6ZRK6 1079 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 ANO10Q9NW15 660 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 ZNF446Q9NWS9 450 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 FAM53CQ9NYF3 392 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 NAP1L2Q9ULW6 460 aaPredicted RBP6.33□□□□□ -1.4
LIMA1-212ENST00000552491 SH3TC1Q8TE82 1336 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 RFX7Q2KHR2 1363 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 CARMIL3Q8ND23 1372 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 FER1L4A9Z1Z3 1794 aa6.33□□□□□ -1.4
LIMA1-212ENST00000552491 LMOD2Q6P5Q4 547 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 ATG9AQ7Z3C6 839 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 OSBPL5Q9H0X9 879 aaPredicted RBP6.32□□□□□ -1.4
LIMA1-212ENST00000552491 SLC52A2Q9HAB3 445 aa6.32□□□□□ -1.4
LIMA1-212ENST00000552491 CLIC4Q9Y696 253 aa6.32□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 155.4 ms