RNA–Protein interactions for RNA: ENST00000547394.6

CUX1-212, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,878 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-212ENST00000547394 KLRK1P26718 216 aa13.11□□□□□ -0.31
CUX1-212ENST00000547394 ADD2P35612 726 aa13.11□□□□□ -0.31
CUX1-212ENST00000547394 CCDC152Q4G0S7 254 aa13.11□□□□□ -0.31
CUX1-212ENST00000547394 CCDC144CPQ8IYA2 1237 aa13.11□□□□□ -0.31
CUX1-212ENST00000547394 SPATA5Q8NB90 893 aa13.11□□□□□ -0.31
CUX1-212ENST00000547394 LPIN2Q92539 896 aa13.11□□□□□ -0.31
CUX1-212ENST00000547394 ARMT1Q9H993 441 aa13.11□□□□□ -0.31
CUX1-212ENST00000547394 SENP2Q9HC62 589 aa13.11□□□□□ -0.31
CUX1-212ENST00000547394 ABCF2Q9UG63 623 aa13.11□□□□□ -0.31
CUX1-212ENST00000547394 RFX7Q2KHR2 1363 aa13.11□□□□□ -0.31
CUX1-212ENST00000547394 IGHMBP2P38935 993 aaKnown RBP13.11□□□□□ -0.31
CUX1-212ENST00000547394 EXOSC10Q01780 885 aaKnown RBP13.11□□□□□ -0.31
CUX1-212ENST00000547394 TTC6Q86TZ1 520 aa13.11□□□□□ -0.31
CUX1-212ENST00000547394 TBC1D10CQ8IV04 446 aa13.11□□□□□ -0.31
CUX1-212ENST00000547394 CELF1Q92879 486 aaKnown RBP13.11□□□□□ -0.31
CUX1-212ENST00000547394 NBPF3Q9H094 633 aa13.11□□□□□ -0.31
CUX1-212ENST00000547394 UTRNP46939 3433 aa13.1□□□□□ -0.31
CUX1-212ENST00000547394 FGFR2P21802 821 aa13.1□□□□□ -0.31
CUX1-212ENST00000547394 CAMK4Q16566 473 aa13.1□□□□□ -0.31
CUX1-212ENST00000547394 MEX3CQ5U5Q3 659 aaKnown RBP13.1□□□□□ -0.31
CUX1-212ENST00000547394 GIMAP6Q6P9H5 292 aa13.1□□□□□ -0.31
CUX1-212ENST00000547394 BCL2L12Q9HB09 334 aa13.1□□□□□ -0.31
CUX1-212ENST00000547394 FBXO3Q9UK99 471 aa13.1□□□□□ -0.31
CUX1-212ENST00000547394 PTPDC1A2A3K4 754 aa13.1□□□□□ -0.31
CUX1-212ENST00000547394 H3BQV1 296 aa13.1□□□□□ -0.31
CUX1-212ENST00000547394 MBD3O95983 291 aa13.1□□□□□ -0.31
CUX1-212ENST00000547394 SLC5A1P13866 664 aa13.1□□□□□ -0.31
CUX1-212ENST00000547394 IMMTQ16891 758 aaKnown RBP13.1□□□□□ -0.31
CUX1-212ENST00000547394 IFFO2Q5TF58 517 aa13.1□□□□□ -0.31
CUX1-212ENST00000547394 FAM184AQ8NB25 1140 aa13.1□□□□□ -0.31
CUX1-212ENST00000547394 PRC1O43663 620 aa13.1□□□□□ -0.31
CUX1-212ENST00000547394 MBD4O95243 580 aa13.1□□□□□ -0.31
CUX1-212ENST00000547394 CTDSPL2Q05D32 466 aa13.1□□□□□ -0.31
CUX1-212ENST00000547394 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.1□□□□□ -0.31
CUX1-212ENST00000547394 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.1□□□□□ -0.317e-7■■■□□ 15.6
CUX1-212ENST00000547394 ZNF213O14771 459 aa13.09□□□□□ -0.31
CUX1-212ENST00000547394 PDIA3P30101 505 aaKnown RBP13.09□□□□□ -0.31
CUX1-212ENST00000547394 ANTXR2P58335 489 aa13.09□□□□□ -0.31
CUX1-212ENST00000547394 VPS72Q15906 364 aa13.09□□□□□ -0.31
CUX1-212ENST00000547394 LRSAM1Q6UWE0 723 aa13.09□□□□□ -0.31
CUX1-212ENST00000547394 NSUN7Q8NE18 718 aaKnown RBP13.09□□□□□ -0.31
CUX1-212ENST00000547394 SMARCC1Q92922 1105 aaPredicted RBP13.09□□□□□ -0.31
CUX1-212ENST00000547394 AIDAQ96BJ3 306 aa13.09□□□□□ -0.31
CUX1-212ENST00000547394 MYL10Q9BUA6 226 aa13.09□□□□□ -0.31
CUX1-212ENST00000547394 CCNL1Q9UK58 526 aaPredicted RBP13.09□□□□□ -0.31
CUX1-212ENST00000547394 ABCC12Q96J65 1359 aa13.09□□□□□ -0.31
CUX1-212ENST00000547394 MROH5Q6ZUA9 1318 aa13.09□□□□□ -0.31
CUX1-212ENST00000547394 WNK3Q9BYP7 1800 aa13.09□□□□□ -0.31
CUX1-212ENST00000547394 NPHP1O15259 732 aa13.09□□□□□ -0.31
CUX1-212ENST00000547394 KLF18A0A0U1RQI7 1052 aa13.08□□□□□ -0.32
CUX1-212ENST00000547394 B4E1Z4 1266 aa13.08□□□□□ -0.32
CUX1-212ENST00000547394 PARP10Q53GL7 1025 aa13.08□□□□□ -0.32
CUX1-212ENST00000547394 UBE2Q2LH0YL09 131 aa13.08□□□□□ -0.32
CUX1-212ENST00000547394 ZFYP08048 801 aaPredicted RBP13.08□□□□□ -0.32
CUX1-212ENST00000547394 LIG1P18858 919 aa13.08□□□□□ -0.32
CUX1-212ENST00000547394 SLC4A8Q2Y0W8 1093 aa13.08□□□□□ -0.32
CUX1-212ENST00000547394 RRP12Q5JTH9 1297 aaKnown RBP13.08□□□□□ -0.32
CUX1-212ENST00000547394 CYB5R4Q7L1T6 521 aa13.08□□□□□ -0.32
CUX1-212ENST00000547394 ADGRA1Q86SQ6 560 aa13.08□□□□□ -0.32
CUX1-212ENST00000547394 ZKSCAN3Q9BRR0 538 aa13.08□□□□□ -0.32
CUX1-212ENST00000547394 TOMM22Q9NS69 142 aa13.08□□□□□ -0.32
CUX1-212ENST00000547394 TFCP2L1Q9NZI6 479 aa13.08□□□□□ -0.32
CUX1-212ENST00000547394 MYH3P11055 1940 aa13.07□□□□□ -0.32
CUX1-212ENST00000547394 AKAP11Q9UKA4 1901 aa13.07□□□□□ -0.32
CUX1-212ENST00000547394 GOLGA8BA8MQT2 603 aa13.07□□□□□ -0.32
CUX1-212ENST00000547394 PFKFB2O60825 505 aa13.07□□□□□ -0.32
CUX1-212ENST00000547394 ARID4AP29374 1257 aaPredicted RBP13.07□□□□□ -0.32
CUX1-212ENST00000547394 RALYLQ86SE5 291 aaKnown RBP13.07□□□□□ -0.32
CUX1-212ENST00000547394 LCORLQ8N3X6 602 aa13.07□□□□□ -0.32
CUX1-212ENST00000547394 EPB41L4AQ9HCS5 686 aaPredicted RBP13.07□□□□□ -0.32
CUX1-212ENST00000547394 LRP2BPQ9P2M1 347 aa13.07□□□□□ -0.32
CUX1-212ENST00000547394 TACC3Q9Y6A5 838 aa13.07□□□□□ -0.32
CUX1-212ENST00000547394 ANKRD36CQ5JPF3 1778 aa13.07□□□□□ -0.32
CUX1-212ENST00000547394 TCRBV5S4A2TA0A5A2 114 aa13.07□□□□□ -0.32
CUX1-212ENST00000547394 UBE2HP62256 183 aa13.07□□□□□ -0.32
CUX1-212ENST00000547394 AIFM3Q96NN9 605 aa13.07□□□□□ -0.32
CUX1-212ENST00000547394 ZNF652Q9Y2D9 606 aa13.07□□□□□ -0.32
CUX1-212ENST00000547394 ATP6V1DQ9Y5K8 247 aa13.07□□□□□ -0.32
CUX1-212ENST00000547394 NEDD4P46934 1319 aa13.07□□□□□ -0.32
CUX1-212ENST00000547394 NBPF5PQ86XG9 351 aaPredicted RBP13.06□□□□□ -0.32
CUX1-212ENST00000547394 SDR42E1Q8WUS8 393 aa13.06□□□□□ -0.32
CUX1-212ENST00000547394 ANKRD18AQ8IVF6 992 aa13.06□□□□□ -0.32
CUX1-212ENST00000547394 MB21D2Q8IYB1 491 aaPredicted RBP13.06□□□□□ -0.32
CUX1-212ENST00000547394 GPR101Q96P66 508 aaPredicted RBP13.06□□□□□ -0.32
CUX1-212ENST00000547394 STRBPQ96SI9 672 aaKnown RBP13.06□□□□□ -0.32
CUX1-212ENST00000547394 ALDH8A1Q9H2A2 487 aaPredicted RBP13.06□□□□□ -0.32
CUX1-212ENST00000547394 LAMA4Q16363 1823 aa13.06□□□□□ -0.32
CUX1-212ENST00000547394 SPEF2Q9C093 1822 aa13.06□□□□□ -0.32
CUX1-212ENST00000547394 HMGB1P09429 215 aaKnown RBP13.06□□□□□ -0.32
CUX1-212ENST00000547394 PDCP20941 246 aa13.06□□□□□ -0.32
CUX1-212ENST00000547394 HSPA1LP34931 641 aa13.06□□□□□ -0.32
CUX1-212ENST00000547394 KRT85P78386 507 aa13.06□□□□□ -0.32
CUX1-212ENST00000547394 PLCB2Q00722 1185 aa13.06□□□□□ -0.32
CUX1-212ENST00000547394 EVX2Q03828 476 aa13.06□□□□□ -0.32
CUX1-212ENST00000547394 LRRFIP1Q32MZ4 808 aaKnown RBP13.06□□□□□ -0.32
CUX1-212ENST00000547394 CKAP2LQ8IYA6 745 aa13.06□□□□□ -0.32
CUX1-212ENST00000547394 ARHGEF1Q92888 912 aaKnown RBP13.06□□□□□ -0.32
CUX1-212ENST00000547394 TRIM44Q96DX7 344 aaPredicted RBP13.06□□□□□ -0.32
CUX1-212ENST00000547394 SPATA32Q96LK8 384 aa13.06□□□□□ -0.32
CUX1-212ENST00000547394 CTNNA3Q9UI47 895 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 525.7 ms