RNA–Protein interactions for RNA: ENST00000545942.5

CHD4-214, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 1 (best)

Gene CHD4, Length 1,317 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-214ENST00000545942 RIPOR2Q9Y4F9 1068 aa28.59■■■□□ 2.17
CHD4-214ENST00000545942 MROH5Q6ZUA9 1318 aa28.58■■■□□ 2.17
CHD4-214ENST00000545942 SLC10A3P09131 477 aa28.58■■■□□ 2.17
CHD4-214ENST00000545942 FKBP1AP62942 108 aaKnown RBP28.58■■■□□ 2.17
CHD4-214ENST00000545942 PRAMEF18Q5VWM3 479 aa28.57■■■□□ 2.16
CHD4-214ENST00000545942 APOBEC3FQ8IUX4 373 aaKnown RBP28.57■■■□□ 2.16
CHD4-214ENST00000545942 PAPPA2Q9BXP8 1791 aa28.56■■■□□ 2.16
CHD4-214ENST00000545942 DLGAP5Q15398 846 aa28.56■■■□□ 2.16
CHD4-214ENST00000545942 NF2P35240 595 aa28.55■■■□□ 2.16
CHD4-214ENST00000545942 KIF23Q02241 960 aaPredicted RBP28.55■■■□□ 2.16
CHD4-214ENST00000545942 MTMR14Q8NCE2 650 aa28.55■■■□□ 2.16
CHD4-214ENST00000545942 F8W031 263 aaPredicted RBP28.54■■■□□ 2.16
CHD4-214ENST00000545942 HIBADHP31937 336 aaKnown RBP28.54■■■□□ 2.16
CHD4-214ENST00000545942 GYG1P46976 350 aa28.54■■■□□ 2.16
CHD4-214ENST00000545942 LRRC24Q50LG9 513 aa28.54■■■□□ 2.16
CHD4-214ENST00000545942 TDRD7Q8NHU6 1098 aaKnown RBP28.54■■■□□ 2.16
CHD4-214ENST00000545942 JAG2Q9Y219 1238 aa28.54■■■□□ 2.16
CHD4-214ENST00000545942 METTL24Q5JXM2 366 aa28.53■■■□□ 2.16
CHD4-214ENST00000545942 FAM84BQ96KN1 310 aaPredicted RBP28.53■■■□□ 2.16
CHD4-214ENST00000545942 FAM205AQ6ZU69 1335 aa28.53■■■□□ 2.16
CHD4-214ENST00000545942 MOB2Q70IA6 237 aa28.52■■■□□ 2.16
CHD4-214ENST00000545942 RASAL3Q86YV0 1011 aa28.52■■■□□ 2.16
CHD4-214ENST00000545942 TTLL12Q14166 644 aaPredicted RBP28.51■■■□□ 2.15
CHD4-214ENST00000545942 CFAP100Q494V2 611 aa28.51■■■□□ 2.15
CHD4-214ENST00000545942 NOB1Q9ULX3 412 aaKnown RBP28.51■■■□□ 2.15
CHD4-214ENST00000545942 UBE2Q2LH0YL09 131 aa28.5■■■□□ 2.15
CHD4-214ENST00000545942 MYO1BO43795 1136 aa28.5■■■□□ 2.15
CHD4-214ENST00000545942 KLHDC4Q8TBB5 520 aa28.5■■■□□ 2.15
CHD4-214ENST00000545942 SPDYE2BA6NHP3 402 aa28.49■■■□□ 2.15
CHD4-214ENST00000545942 PDE8BO95263 885 aa28.49■■■□□ 2.15
CHD4-214ENST00000545942 SPDYE6P0CI01 402 aa28.49■■■□□ 2.15
CHD4-214ENST00000545942 MFSD14BQ5SR56 506 aa28.49■■■□□ 2.15
CHD4-214ENST00000545942 VPS37DQ86XT2 251 aa28.49■■■□□ 2.15
CHD4-214ENST00000545942 VGLL2Q8N8G2 317 aa28.49■■■□□ 2.15
CHD4-214ENST00000545942 API5Q9BZZ5 524 aaKnown RBP28.49■■■□□ 2.15
CHD4-214ENST00000545942 SAGE1Q9NXZ1 904 aa28.49■■■□□ 2.15
CHD4-214ENST00000545942 COL1A1P02452 1464 aaPredicted RBP28.49■■■□□ 2.15
CHD4-214ENST00000545942 REM2Q8IYK8 340 aaPredicted RBP28.48■■■□□ 2.15
CHD4-214ENST00000545942 CSRNP1Q96S65 589 aa28.48■■■□□ 2.15
CHD4-214ENST00000545942 DEFB129Q9H1M3 183 aa28.48■■■□□ 2.15
CHD4-214ENST00000545942 PCDHAC2Q9Y5I4 1007 aa28.48■■■□□ 2.15
CHD4-214ENST00000545942 UBTFL1P0CB47 393 aaPredicted RBP28.47■■■□□ 2.15
CHD4-214ENST00000545942 RBM5P52756 815 aaKnown RBP eCLIP28.47■■■□□ 2.15
CHD4-214ENST00000545942 CAVIN4Q5BKX8 364 aa28.47■■■□□ 2.15
CHD4-214ENST00000545942 FBXO33Q7Z6M2 555 aa28.47■■■□□ 2.15
CHD4-214ENST00000545942 PRMT6Q96LA8 375 aaPredicted RBP28.47■■■□□ 2.15
CHD4-214ENST00000545942 RARSP54136 660 aaKnown RBP28.46■■■□□ 2.15
CHD4-214ENST00000545942 ARMC9Q7Z3E5 817 aa28.46■■■□□ 2.15
CHD4-214ENST00000545942 PPP2R3BQ9Y5P8 575 aa28.46■■■□□ 2.15
CHD4-214ENST00000545942 ABHD8Q96I13 439 aa28.45■■■□□ 2.15
CHD4-214ENST00000545942 RNF186Q9NXI6 227 aa28.45■■■□□ 2.15
CHD4-214ENST00000545942 TTF2Q9UNY4 1162 aaKnown RBP28.45■■■□□ 2.15
CHD4-214ENST00000545942 CLRN2A0PK11 232 aa28.44■■■□□ 2.14
CHD4-214ENST00000545942 RFX5P48382 616 aaPredicted RBP28.44■■■□□ 2.14
CHD4-214ENST00000545942 SERPINA10Q9UK55 444 aa28.44■■■□□ 2.14
CHD4-214ENST00000545942 EYA2O00167 538 aa28.43■■■□□ 2.14
CHD4-214ENST00000545942 TRPA1O75762 1119 aa28.43■■■□□ 2.14
CHD4-214ENST00000545942 PTPN12Q05209 780 aaKnown RBP28.43■■■□□ 2.14
CHD4-214ENST00000545942 PRKG1Q13976 671 aa28.43■■■□□ 2.14
CHD4-214ENST00000545942 PUM3Q15397 648 aaKnown RBP28.43■■■□□ 2.14
CHD4-214ENST00000545942 IQSEC3Q9UPP2 1182 aaPredicted RBP28.43■■■□□ 2.14
CHD4-214ENST00000545942 KIF16BQ96L93 1317 aa28.43■■■□□ 2.14
CHD4-214ENST00000545942 FRAT2O75474 233 aaPredicted RBP28.43■■■□□ 2.14
CHD4-214ENST00000545942 IFIT1P09914 478 aaKnown RBP28.43■■■□□ 2.14
CHD4-214ENST00000545942 VEZTQ9HBM0 779 aa28.43■■■□□ 2.14
CHD4-214ENST00000545942 HDAC5Q9UQL6 1122 aa28.43■■■□□ 2.14
CHD4-214ENST00000545942 FGFR2P21802 821 aa28.42■■■□□ 2.14
CHD4-214ENST00000545942 TBC1D22AQ8WUA7 517 aa28.42■■■□□ 2.14
CHD4-214ENST00000545942 AOX1Q06278 1338 aa28.41■■■□□ 2.14
CHD4-214ENST00000545942 BCAMP50895 628 aa28.41■■■□□ 2.14
CHD4-214ENST00000545942 CHAF1AQ13111 956 aaPredicted RBP28.41■■■□□ 2.14
CHD4-214ENST00000545942 ARHGAP45Q92619 1136 aa28.41■■■□□ 2.14
CHD4-214ENST00000545942 ANGEL1Q9UNK9 670 aaKnown RBP28.41■■■□□ 2.14
CHD4-214ENST00000545942 SUPT20HL1Q3ZLR7 823 aa28.4■■■□□ 2.14
CHD4-214ENST00000545942 LDLRAD1Q5T700 205 aa28.4■■■□□ 2.14
CHD4-214ENST00000545942 FBXO3Q9UK99 471 aa28.4■■■□□ 2.14
CHD4-214ENST00000545942 PPP1R12BO60237 982 aaPredicted RBP28.38■■■□□ 2.13
CHD4-214ENST00000545942 SLC5A1P13866 664 aa28.38■■■□□ 2.13
CHD4-214ENST00000545942 TNFAIP1Q13829 316 aa28.38■■■□□ 2.13
CHD4-214ENST00000545942 SPDYE2Q495Y8 402 aa28.38■■■□□ 2.13
CHD4-214ENST00000545942 ATG9AQ7Z3C6 839 aa28.38■■■□□ 2.13
CHD4-214ENST00000545942 DZIP1LQ8IYY4 767 aaKnown RBP28.38■■■□□ 2.13
CHD4-214ENST00000545942 LPIN2Q92539 896 aa28.38■■■□□ 2.13
CHD4-214ENST00000545942 LRRFIP2Q9Y608 721 aaKnown RBP28.38■■■□□ 2.13
CHD4-214ENST00000545942 ECM29Q5VYK3 1845 aa28.38■■■□□ 2.13
CHD4-214ENST00000545942 CRKP46108 304 aa28.37■■■□□ 2.13
CHD4-214ENST00000545942 RASA3Q14644 834 aa28.37■■■□□ 2.13
CHD4-214ENST00000545942 MAP3K11Q16584 847 aa28.37■■■□□ 2.13
CHD4-214ENST00000545942 TDRD3Q9H7E2 651 aaKnown RBP28.37■■■□□ 2.13
CHD4-214ENST00000545942 ZNF70Q9UC06 446 aaPredicted RBP28.37■■■□□ 2.13
CHD4-214ENST00000545942 FZD1Q9UP38 647 aa28.37■■■□□ 2.13
CHD4-214ENST00000545942 ARAP2Q8WZ64 1704 aa28.36■■■□□ 2.13
CHD4-214ENST00000545942 SSC5DA1L4H1 1573 aa28.36■■■□□ 2.13
CHD4-214ENST00000545942 CIAO1O76071 339 aa28.36■■■□□ 2.13
CHD4-214ENST00000545942 GRIK5Q16478 980 aa28.36■■■□□ 2.13
CHD4-214ENST00000545942 INTS3Q68E01 1043 aaKnown RBP28.36■■■□□ 2.13
CHD4-214ENST00000545942 MEIS3Q99687 375 aa28.36■■■□□ 2.13
CHD4-214ENST00000545942 MCOLN1Q9GZU1 580 aa28.36■■■□□ 2.13
CHD4-214ENST00000545942 SIL1Q9H173 461 aa28.36■■■□□ 2.13
CHD4-214ENST00000545942 HDLBPQ00341 1268 aaKnown RBP28.35■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms