RNA–Protein interactions for RNA: ENST00000543356.6

GNE-206, Transcript of glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase, humanhuman

TSL 1 (best) BASIC

Gene GNE, Length 2,576 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GNE-206ENST00000543356 COL1A1P02452 1464 aaPredicted RBP11.16□□□□□ -0.62
GNE-206ENST00000543356 SLFNL1Q499Z3 407 aa11.16□□□□□ -0.62
GNE-206ENST00000543356 TTC14Q96N46 770 aa11.16□□□□□ -0.62
GNE-206ENST00000543356 CRAMP1Q96RY5 1269 aa11.16□□□□□ -0.62
GNE-206ENST00000543356 ZSWIM6Q9HCJ5 1215 aa11.16□□□□□ -0.62
GNE-206ENST00000543356 SLC15A2Q16348 729 aa11.16□□□□□ -0.62
GNE-206ENST00000543356 FBXO33Q7Z6M2 555 aa11.16□□□□□ -0.62
GNE-206ENST00000543356 BRIP1Q9BX63 1249 aa11.16□□□□□ -0.62
GNE-206ENST00000543356 UPF3BQ9BZI7 483 aaKnown RBP11.16□□□□□ -0.62
GNE-206ENST00000543356 LEMD3Q9Y2U8 911 aa11.16□□□□□ -0.62
GNE-206ENST00000543356 TCRBV5S4A2TA0A5A2 114 aa11.15□□□□□ -0.62
GNE-206ENST00000543356 PDE6AP16499 860 aa11.15□□□□□ -0.62
GNE-206ENST00000543356 PSMA5P28066 241 aa11.15□□□□□ -0.62
GNE-206ENST00000543356 GYG1P46976 350 aa11.15□□□□□ -0.62
GNE-206ENST00000543356 EN1Q05925 392 aaPredicted RBP11.15□□□□□ -0.62
GNE-206ENST00000543356 KRT32Q14532 448 aa11.15□□□□□ -0.62
GNE-206ENST00000543356 WASHC4Q2M389 1173 aa11.15□□□□□ -0.62
GNE-206ENST00000543356 SLC9C2Q5TAH2 1124 aa11.15□□□□□ -0.62
GNE-206ENST00000543356 TMC4Q7Z404 712 aa11.15□□□□□ -0.62
GNE-206ENST00000543356 SPRYD3Q8NCJ5 442 aa11.15□□□□□ -0.62
GNE-206ENST00000543356 FAM84BQ96KN1 310 aaPredicted RBP11.15□□□□□ -0.62
GNE-206ENST00000543356 JAKMIP1Q96N16 626 aaKnown RBP11.15□□□□□ -0.62
GNE-206ENST00000543356 STK32BQ9NY57 414 aa11.15□□□□□ -0.62
GNE-206ENST00000543356 CIZ1Q9ULV3 898 aaPredicted RBP11.15□□□□□ -0.62
GNE-206ENST00000543356 XDHP47989 1333 aa11.15□□□□□ -0.62
GNE-206ENST00000543356 DUOX1Q9NRD9 1551 aa11.15□□□□□ -0.62
GNE-206ENST00000543356 IDH1O75874 414 aaKnown RBP11.15□□□□□ -0.63
GNE-206ENST00000543356 HSPD1P10809 573 aaKnown RBP11.15□□□□□ -0.63
GNE-206ENST00000543356 CASTP20810 708 aaKnown RBP11.15□□□□□ -0.63
GNE-206ENST00000543356 MAP3K12Q12852 859 aa11.15□□□□□ -0.63
GNE-206ENST00000543356 CHMP5Q9NZZ3 219 aa11.15□□□□□ -0.63
GNE-206ENST00000543356 DENND2AQ9ULE3 1009 aa11.15□□□□□ -0.63
GNE-206ENST00000543356 PARP3Q9Y6F1 533 aa11.15□□□□□ -0.63
GNE-206ENST00000543356 LAMA4Q16363 1823 aa11.15□□□□□ -0.63
GNE-206ENST00000543356 KIAA1551Q9HCM1 1747 aa11.14□□□□□ -0.63
GNE-206ENST00000543356 BBOX1O75936 387 aa11.14□□□□□ -0.63
GNE-206ENST00000543356 HSP90AA1P07900 732 aaKnown RBP11.14□□□□□ -0.63
GNE-206ENST00000543356 ADCK5Q3MIX3 580 aa11.14□□□□□ -0.63
GNE-206ENST00000543356 VPS53Q5VIR6 699 aa11.14□□□□□ -0.63
GNE-206ENST00000543356 C15orf52Q6ZUT6 534 aaKnown RBP11.14□□□□□ -0.63
GNE-206ENST00000543356 PUS7LQ9H0K6 701 aaKnown RBP11.14□□□□□ -0.63
GNE-206ENST00000543356 WWC3Q9ULE0 1092 aa11.14□□□□□ -0.63
GNE-206ENST00000543356 CYP46A1Q9Y6A2 500 aa11.14□□□□□ -0.63
GNE-206ENST00000543356 ZNF532Q9HCE3 1301 aa11.14□□□□□ -0.63
GNE-206ENST00000543356 WTIPA6NIX2 430 aaPredicted RBP11.14□□□□□ -0.63
GNE-206ENST00000543356 MMP10P09238 476 aa11.14□□□□□ -0.63
GNE-206ENST00000543356 BAG6P46379 1132 aa11.14□□□□□ -0.63
GNE-206ENST00000543356 RUFY3Q7L099 469 aa11.14□□□□□ -0.63
GNE-206ENST00000543356 VPS37DQ86XT2 251 aa11.14□□□□□ -0.63
GNE-206ENST00000543356 GPAA1O43292 621 aa11.13□□□□□ -0.63
GNE-206ENST00000543356 KLRK1P26718 216 aa11.13□□□□□ -0.63
GNE-206ENST00000543356 SF3B2Q13435 895 aaKnown RBP11.13□□□□□ -0.63
GNE-206ENST00000543356 CUL4AQ13619 759 aa11.13□□□□□ -0.63
GNE-206ENST00000543356 TMX3Q96JJ7 454 aa11.13□□□□□ -0.63
GNE-206ENST00000543356 ALDH8A1Q9H2A2 487 aaPredicted RBP11.13□□□□□ -0.63
GNE-206ENST00000543356 CACNA1SQ13698 1873 aa11.13□□□□□ -0.63
GNE-206ENST00000543356 FOXP2O15409 715 aa11.13□□□□□ -0.63
GNE-206ENST00000543356 CYP21A2P08686 494 aa11.13□□□□□ -0.63
GNE-206ENST00000543356 HIBADHP31937 336 aaKnown RBP11.13□□□□□ -0.63
GNE-206ENST00000543356 PDE6BP35913 854 aa11.13□□□□□ -0.63
GNE-206ENST00000543356 CTNNA3Q9UI47 895 aa11.13□□□□□ -0.63
GNE-206ENST00000543356 NPR1P16066 1061 aa11.12□□□□□ -0.63
GNE-206ENST00000543356 AK2P54819 239 aa11.12□□□□□ -0.63
GNE-206ENST00000543356 PDRG1Q9NUG6 133 aa11.12□□□□□ -0.63
GNE-206ENST00000543356 ANKIB1Q9P2G1 1089 aa11.12□□□□□ -0.63
GNE-206ENST00000543356 IGSF3O75054 1194 aa11.12□□□□□ -0.63
GNE-206ENST00000543356 PDIA4P13667 645 aaKnown RBP11.12□□□□□ -0.63
GNE-206ENST00000543356 RPS6KB1P23443 525 aa11.12□□□□□ -0.63
GNE-206ENST00000543356 ATP2B4P23634 1241 aa11.12□□□□□ -0.63
GNE-206ENST00000543356 GPSM2P81274 684 aa11.12□□□□□ -0.63
GNE-206ENST00000543356 TMED8Q6PL24 325 aaPredicted RBP11.12□□□□□ -0.63
GNE-206ENST00000543356 BLOC1S2Q6QNY1 142 aa11.12□□□□□ -0.63
GNE-206ENST00000543356 MAGEB6Q8N7X4 407 aa11.12□□□□□ -0.63
GNE-206ENST00000543356 CWC22Q9HCG8 908 aaKnown RBP11.12□□□□□ -0.63
GNE-206ENST00000543356 TAF6LQ9Y6J9 622 aa11.12□□□□□ -0.63
GNE-206ENST00000543356 ZMYM6O95789 1325 aa11.12□□□□□ -0.63
GNE-206ENST00000543356 PPEF1O14829 653 aaPredicted RBP11.11□□□□□ -0.63
GNE-206ENST00000543356 SRGNP10124 158 aa11.11□□□□□ -0.63
GNE-206ENST00000543356 ILDR1Q86SU0 546 aaPredicted RBP11.11□□□□□ -0.63
GNE-206ENST00000543356 INTS4Q96HW7 963 aaKnown RBP11.11□□□□□ -0.63
GNE-206ENST00000543356 LIMCH1Q9UPQ0 1083 aa11.11□□□□□ -0.63
GNE-206ENST00000543356 TIAM2Q8IVF5 1701 aa11.11□□□□□ -0.63
GNE-206ENST00000543356 MSL1Q68DK7 614 aa11.11□□□□□ -0.63
GNE-206ENST00000543356 SP8Q8IXZ3 490 aa11.11□□□□□ -0.63
GNE-206ENST00000543356 NEK1Q96PY6 1258 aa11.11□□□□□ -0.63
GNE-206ENST00000543356 LRP2BPQ9P2M1 347 aa11.11□□□□□ -0.63
GNE-206ENST00000543356 IQSEC3Q9UPP2 1182 aaPredicted RBP11.11□□□□□ -0.63
GNE-206ENST00000543356 CCDC88AQ3V6T2 1871 aa11.1□□□□□ -0.63
GNE-206ENST00000543356 HMGB1P09429 215 aaKnown RBP11.1□□□□□ -0.63
GNE-206ENST00000543356 CPA1P15085 419 aa11.1□□□□□ -0.63
GNE-206ENST00000543356 ANKRD1Q15327 319 aa11.1□□□□□ -0.63
GNE-206ENST00000543356 ZNF804AQ7Z570 1209 aa11.1□□□□□ -0.63
GNE-206ENST00000543356 AIDAQ96BJ3 306 aa11.1□□□□□ -0.63
GNE-206ENST00000543356 STRBPQ96SI9 672 aaKnown RBP11.1□□□□□ -0.63
GNE-206ENST00000543356 GGA1Q9UJY5 639 aa11.1□□□□□ -0.63
GNE-206ENST00000543356 SALL1Q9NSC2 1324 aa11.1□□□□□ -0.63
GNE-206ENST00000543356 SLC51AQ86UW1 340 aa11.1□□□□□ -0.63
GNE-206ENST00000543356 TXNRD3Q86VQ6 643 aa11.1□□□□□ -0.63
GNE-206ENST00000543356 ZSCAN31Q96LW9 406 aaPredicted RBP11.1□□□□□ -0.63
GNE-206ENST00000543356 FOXD4L1Q9NU39 408 aa11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms