RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 CHAF1AQ13111 956 aaPredicted RBP14.69□□□□□ -0.06
RNF4-222ENST00000541204 RESTQ13127 1097 aa14.69□□□□□ -0.06
RNF4-222ENST00000541204 IFFO2Q5TF58 517 aa14.69□□□□□ -0.06
RNF4-222ENST00000541204 KCNQ4P56696 695 aa14.69□□□□□ -0.06
RNF4-222ENST00000541204 CEBPZQ03701 1054 aaKnown RBP14.69□□□□□ -0.06
RNF4-222ENST00000541204 RIPOR2Q9Y4F9 1068 aa14.69□□□□□ -0.06
RNF4-222ENST00000541204 ZNF165P49910 485 aa14.68□□□□□ -0.06
RNF4-222ENST00000541204 MARCH10Q8NA82 808 aaPredicted RBP14.68□□□□□ -0.06
RNF4-222ENST00000541204 PLA2G12BQ9BX93 195 aa14.68□□□□□ -0.06
RNF4-222ENST00000541204 ITGB4P16144 1822 aa14.68□□□□□ -0.06
RNF4-222ENST00000541204 APOBRQ0VD83 1088 aa14.68□□□□□ -0.06
RNF4-222ENST00000541204 PLA2G4DQ86XP0 818 aa14.68□□□□□ -0.06
RNF4-222ENST00000541204 SPATA31A1Q5TZJ5 1347 aa14.68□□□□□ -0.06
RNF4-222ENST00000541204 RFX7Q2KHR2 1363 aa14.68□□□□□ -0.06
RNF4-222ENST00000541204 KCNQ2O43526 872 aa14.68□□□□□ -0.06
RNF4-222ENST00000541204 CRKLP46109 303 aaKnown RBP14.68□□□□□ -0.06
RNF4-222ENST00000541204 ZNF75DP51815 510 aa14.68□□□□□ -0.06
RNF4-222ENST00000541204 CCT2P78371 535 aaKnown RBP14.68□□□□□ -0.06
RNF4-222ENST00000541204 SCRN1Q12765 414 aa14.68□□□□□ -0.06
RNF4-222ENST00000541204 PUS7LQ9H0K6 701 aaKnown RBP14.68□□□□□ -0.06
RNF4-222ENST00000541204 PRDM10Q9NQV6 1147 aa14.68□□□□□ -0.06
RNF4-222ENST00000541204 IL6STP40189 918 aaPredicted RBP14.67□□□□□ -0.06
RNF4-222ENST00000541204 MCAMP43121 646 aa14.67□□□□□ -0.06
RNF4-222ENST00000541204 SUSD4Q5VX71 490 aa14.67□□□□□ -0.06
RNF4-222ENST00000541204 TDRD7Q8NHU6 1098 aaKnown RBP14.67□□□□□ -0.06
RNF4-222ENST00000541204 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP14.67□□□□□ -0.06
RNF4-222ENST00000541204 E7EWF7 191 aa14.67□□□□□ -0.06
RNF4-222ENST00000541204 DSCC1Q9BVC3 393 aa14.67□□□□□ -0.06
RNF4-222ENST00000541204 NCOA5Q9HCD5 579 aaKnown RBP14.67□□□□□ -0.06
RNF4-222ENST00000541204 GPHNQ9NQX3 736 aaPredicted RBP14.67□□□□□ -0.06
RNF4-222ENST00000541204 COL14A1Q05707 1796 aaKnown RBP14.66□□□□□ -0.06
RNF4-222ENST00000541204 ITPK1Q13572 414 aa14.66□□□□□ -0.06
RNF4-222ENST00000541204 INTS5Q6P9B9 1019 aaKnown RBP14.66□□□□□ -0.06
RNF4-222ENST00000541204 SMIM5Q71RC9 77 aa14.66□□□□□ -0.06
RNF4-222ENST00000541204 DHX32Q7L7V1 743 aaKnown RBP14.66□□□□□ -0.06
RNF4-222ENST00000541204 CDHR2Q9BYE9 1310 aa14.66□□□□□ -0.06
RNF4-222ENST00000541204 RIC1Q4ADV7 1423 aa14.66□□□□□ -0.06
RNF4-222ENST00000541204 LOC102724428A0A0B4J2F2 783 aa14.66□□□□□ -0.06
RNF4-222ENST00000541204 PDE8AO60658 829 aa14.66□□□□□ -0.06
RNF4-222ENST00000541204 IDH1O75874 414 aaKnown RBP14.66□□□□□ -0.06
RNF4-222ENST00000541204 SIK1P57059 783 aa14.66□□□□□ -0.06
RNF4-222ENST00000541204 PPP4R3BQ5MIZ7 849 aa14.66□□□□□ -0.06
RNF4-222ENST00000541204 ZSCAN25Q6NSZ9 544 aa14.66□□□□□ -0.06
RNF4-222ENST00000541204 FTOQ9C0B1 505 aaKnown RBP eCLIP14.66□□□□□ -0.06
RNF4-222ENST00000541204 SEC31BQ9NQW1 1179 aa14.66□□□□□ -0.06
RNF4-222ENST00000541204 CCDC87Q9NVE4 849 aa14.66□□□□□ -0.06
RNF4-222ENST00000541204 COL16A1Q07092 1604 aaPredicted RBP14.65□□□□□ -0.06
RNF4-222ENST00000541204 SMAP1Q8IYB5 467 aaPredicted RBP14.65□□□□□ -0.06
RNF4-222ENST00000541204 C16orf45Q96MC5 204 aaPredicted RBP14.65□□□□□ -0.06
RNF4-222ENST00000541204 ZSCAN16Q9H4T2 348 aaPredicted RBP14.65□□□□□ -0.06
RNF4-222ENST00000541204 CFAP45Q9UL16 551 aa14.65□□□□□ -0.06
RNF4-222ENST00000541204 PHKA1P46020 1223 aa14.65□□□□□ -0.06
RNF4-222ENST00000541204 RAB11FIP4Q86YS3 637 aa14.65□□□□□ -0.06
RNF4-222ENST00000541204 CLIP2Q9UDT6 1046 aa14.65□□□□□ -0.06
RNF4-222ENST00000541204 TAOK2Q9UL54 1235 aa14.65□□□□□ -0.06
RNF4-222ENST00000541204 EIF5P55010 431 aaKnown RBP14.64□□□□□ -0.07
RNF4-222ENST00000541204 SLC9C2Q5TAH2 1124 aa14.64□□□□□ -0.07
RNF4-222ENST00000541204 ZNF34Q8IZ26 560 aa14.64□□□□□ -0.07
RNF4-222ENST00000541204 FBXO3Q9UK99 471 aa14.64□□□□□ -0.07
RNF4-222ENST00000541204 ERVV-1B6SEH8 477 aa14.64□□□□□ -0.07
RNF4-222ENST00000541204 FOXP2O15409 715 aa14.64□□□□□ -0.07
RNF4-222ENST00000541204 PDE8BO95263 885 aa14.64□□□□□ -0.07
RNF4-222ENST00000541204 CBX1P83916 185 aa14.64□□□□□ -0.07
RNF4-222ENST00000541204 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.64□□□□□ -0.07
RNF4-222ENST00000541204 SMARCC2Q8TAQ2 1214 aa14.64□□□□□ -0.07
RNF4-222ENST00000541204 PRDM4Q9UKN5 801 aa14.64□□□□□ -0.07
RNF4-222ENST00000541204 FGAP02671 866 aa14.63□□□□□ -0.07
RNF4-222ENST00000541204 ADD1P35611 737 aaKnown RBP14.63□□□□□ -0.07
RNF4-222ENST00000541204 FAM98CQ17RN3 349 aaKnown RBP14.63□□□□□ -0.07
RNF4-222ENST00000541204 CCDC144BQ3MJ40 725 aa14.63□□□□□ -0.07
RNF4-222ENST00000541204 CCDC144CPQ8IYA2 1237 aa14.63□□□□□ -0.07
RNF4-222ENST00000541204 NSUN7Q8NE18 718 aaKnown RBP14.63□□□□□ -0.07
RNF4-222ENST00000541204 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.63□□□□□ -0.07
RNF4-222ENST00000541204 CTDNEP1O95476 244 aa14.63□□□□□ -0.07
RNF4-222ENST00000541204 APPP05067 770 aa14.63□□□□□ -0.07
RNF4-222ENST00000541204 CCDC102BQ68D86 513 aa14.63□□□□□ -0.07
RNF4-222ENST00000541204 C11orf57Q6ZUT1 292 aaPredicted RBP14.63□□□□□ -0.07
RNF4-222ENST00000541204 PDCL2Q8N4E4 241 aa14.63□□□□□ -0.07
RNF4-222ENST00000541204 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.63□□□□□ -0.07
RNF4-222ENST00000541204 CACTINQ8WUQ7 758 aaKnown RBP14.63□□□□□ -0.07
RNF4-222ENST00000541204 PIH1D3Q9NQM4 214 aaKnown RBP14.63□□□□□ -0.07
RNF4-222ENST00000541204 NIP7Q9Y221 180 aaKnown RBP eCLIP14.63□□□□□ -0.07
RNF4-222ENST00000541204 LRP6O75581 1613 aa14.63□□□□□ -0.07
RNF4-222ENST00000541204 GPAA1O43292 621 aa14.62□□□□□ -0.07
RNF4-222ENST00000541204 CTIFO43310 598 aaKnown RBP14.62□□□□□ -0.07
RNF4-222ENST00000541204 PFKFB2O60825 505 aa14.62□□□□□ -0.07
RNF4-222ENST00000541204 HMGB1P09429 215 aaKnown RBP14.62□□□□□ -0.07
RNF4-222ENST00000541204 CCAR1Q8IX12 1150 aaKnown RBP14.62□□□□□ -0.07
RNF4-222ENST00000541204 VGLL2Q8N8G2 317 aa14.62□□□□□ -0.07
RNF4-222ENST00000541204 MPHOSPH8Q99549 860 aa14.62□□□□□ -0.07
RNF4-222ENST00000541204 GOLPH3LQ9H4A5 285 aa14.62□□□□□ -0.07
RNF4-222ENST00000541204 A0A087WWV3 80 aa14.62□□□□□ -0.07
RNF4-222ENST00000541204 PTPDC1A2A3K4 754 aa14.62□□□□□ -0.07
RNF4-222ENST00000541204 GUCY1B3Q02153 619 aa14.62□□□□□ -0.07
RNF4-222ENST00000541204 IQCB1Q15051 598 aa14.62□□□□□ -0.07
RNF4-222ENST00000541204 LRRFIP1Q32MZ4 808 aaKnown RBP14.62□□□□□ -0.07
RNF4-222ENST00000541204 APPBP2Q92624 585 aa14.62□□□□□ -0.07
RNF4-222ENST00000541204 UTP14AQ9BVJ6 771 aaKnown RBP14.62□□□□□ -0.07
RNF4-222ENST00000541204 GOLGA6L19H0YKK7 550 aa14.62□□□□□ -0.07
RNF4-222ENST00000541204 EXOSC10Q01780 885 aaKnown RBP14.62□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 92.1 ms