RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, humanhuman

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-209ENST00000539662 MYOZ2Q9NPC6 264 aa13.33□□□□□ -0.28
HMGA2-209ENST00000539662 HDAC5Q9UQL6 1122 aa13.33□□□□□ -0.28
HMGA2-209ENST00000539662 COL1A1P02452 1464 aaPredicted RBP13.33□□□□□ -0.28
HMGA2-209ENST00000539662 SASH1O94885 1247 aa13.32□□□□□ -0.28
HMGA2-209ENST00000539662 SCARF1Q14162 830 aa13.32□□□□□ -0.28
HMGA2-209ENST00000539662 ATP2B3Q16720 1220 aa13.32□□□□□ -0.28
HMGA2-209ENST00000539662 NBPF9Q3BBW0 867 aa13.32□□□□□ -0.28
HMGA2-209ENST00000539662 CEP85Q6P2H3 762 aa13.32□□□□□ -0.28
HMGA2-209ENST00000539662 USP48Q86UV5 1035 aa13.32□□□□□ -0.28
HMGA2-209ENST00000539662 SSH3Q8TE77 659 aa13.32□□□□□ -0.28
HMGA2-209ENST00000539662 LPIN2Q92539 896 aa13.32□□□□□ -0.28
HMGA2-209ENST00000539662 CEP126Q9P2H0 1117 aa13.32□□□□□ -0.28
HMGA2-209ENST00000539662 FBXO3Q9UK99 471 aa13.32□□□□□ -0.28
HMGA2-209ENST00000539662 ARAP2Q8WZ64 1704 aa13.32□□□□□ -0.28
HMGA2-209ENST00000539662 ADM5C9JUS6 153 aa13.31□□□□□ -0.28
HMGA2-209ENST00000539662 CHAF1AQ13111 956 aaPredicted RBP13.31□□□□□ -0.28
HMGA2-209ENST00000539662 CST9Q5W186 159 aa13.31□□□□□ -0.28
HMGA2-209ENST00000539662 SIRT2Q8IXJ6 389 aa13.31□□□□□ -0.28
HMGA2-209ENST00000539662 ZBTB40Q9NUA8 1239 aa13.31□□□□□ -0.28
HMGA2-209ENST00000539662 FAM205AQ6ZU69 1335 aa13.31□□□□□ -0.28
HMGA2-209ENST00000539662 MYH13Q9UKX3 1938 aa13.31□□□□□ -0.28
HMGA2-209ENST00000539662 TRPM7Q96QT4 1865 aa13.3□□□□□ -0.28
HMGA2-209ENST00000539662 IFIT1P09914 478 aaKnown RBP13.3□□□□□ -0.28
HMGA2-209ENST00000539662 SLC5A1P13866 664 aa13.3□□□□□ -0.28
HMGA2-209ENST00000539662 PHKA1P46020 1223 aa13.3□□□□□ -0.28
HMGA2-209ENST00000539662 ANGEL2Q5VTE6 544 aaKnown RBP13.3□□□□□ -0.28
HMGA2-209ENST00000539662 GGA3Q9NZ52 723 aa13.3□□□□□ -0.28
HMGA2-209ENST00000539662 A0A1B0GUL7 405 aa13.29□□□□□ -0.28
HMGA2-209ENST00000539662 WNT10BO00744 389 aa13.29□□□□□ -0.28
HMGA2-209ENST00000539662 CAVIN4Q5BKX8 364 aa13.29□□□□□ -0.28
HMGA2-209ENST00000539662 MFSD14BQ5SR56 506 aa13.29□□□□□ -0.28
HMGA2-209ENST00000539662 VPS37DQ86XT2 251 aa13.29□□□□□ -0.28
HMGA2-209ENST00000539662 ZC3H15Q8WU90 426 aaKnown RBP13.29□□□□□ -0.28
HMGA2-209ENST00000539662 ZBED3Q96IU2 234 aaPredicted RBP13.29□□□□□ -0.28
HMGA2-209ENST00000539662 MYO3BQ8WXR4 1341 aa13.29□□□□□ -0.28
HMGA2-209ENST00000539662 SURF6O75683 361 aaKnown RBP13.28□□□□□ -0.28
HMGA2-209ENST00000539662 MS4A1P11836 297 aa13.28□□□□□ -0.28
HMGA2-209ENST00000539662 G3BP1Q13283 466 aaKnown RBP eCLIP13.28□□□□□ -0.28
HMGA2-209ENST00000539662 PDE3AQ14432 1141 aa13.28□□□□□ -0.28
HMGA2-209ENST00000539662 PRAMEF18Q5VWM3 479 aa13.28□□□□□ -0.28
HMGA2-209ENST00000539662 XAGE2Q96GT9 111 aa13.28□□□□□ -0.28
HMGA2-209ENST00000539662 DDX19BQ9UMR2 479 aa13.28□□□□□ -0.28
HMGA2-209ENST00000539662 PCNTO95613 3336 aa13.28□□□□□ -0.28
HMGA2-209ENST00000539662 TMEM88BA6NKF7 163 aa13.27□□□□□ -0.29
HMGA2-209ENST00000539662 RRP1P56182 461 aaKnown RBP13.27□□□□□ -0.29
HMGA2-209ENST00000539662 FKBP1AP62942 108 aaKnown RBP13.27□□□□□ -0.29
HMGA2-209ENST00000539662 CCDC102BQ68D86 513 aa13.27□□□□□ -0.29
HMGA2-209ENST00000539662 CDC37L1Q7L3B6 337 aa13.27□□□□□ -0.29
HMGA2-209ENST00000539662 KRT26Q7Z3Y9 468 aa13.27□□□□□ -0.29
HMGA2-209ENST00000539662 PRMT6Q96LA8 375 aaPredicted RBP13.27□□□□□ -0.29
HMGA2-209ENST00000539662 NEUROD6Q96NK8 337 aa13.27□□□□□ -0.29
HMGA2-209ENST00000539662 ZNF408Q9H9D4 720 aa13.27□□□□□ -0.29
HMGA2-209ENST00000539662 CREBZFQ9NS37 354 aa13.27□□□□□ -0.29
HMGA2-209ENST00000539662 MKRN1Q9UHC7 482 aaKnown RBP13.27□□□□□ -0.29
HMGA2-209ENST00000539662 EXOC6BQ9Y2D4 811 aa13.27□□□□□ -0.29
HMGA2-209ENST00000539662 NOP58Q9Y2X3 529 aaKnown RBP13.27□□□□□ -0.29
HMGA2-209ENST00000539662 FRAT2O75474 233 aaPredicted RBP13.26□□□□□ -0.29
HMGA2-209ENST00000539662 CFAP100Q494V2 611 aa13.26□□□□□ -0.29
HMGA2-209ENST00000539662 PI16Q6UXB8 463 aa13.26□□□□□ -0.29
HMGA2-209ENST00000539662 OGFOD1Q8N543 542 aa13.26□□□□□ -0.29
HMGA2-209ENST00000539662 DCPSQ96C86 337 aaKnown RBP13.26□□□□□ -0.29
HMGA2-209ENST00000539662 KLRG1Q96E93 195 aa13.26□□□□□ -0.29
HMGA2-209ENST00000539662 TLR7Q9NYK1 1049 aaKnown RBP13.26□□□□□ -0.29
HMGA2-209ENST00000539662 TTF2Q9UNY4 1162 aaKnown RBP13.26□□□□□ -0.29
HMGA2-209ENST00000539662 ECM29Q5VYK3 1845 aa13.25□□□□□ -0.29
HMGA2-209ENST00000539662 CLRN2A0PK11 232 aa13.25□□□□□ -0.29
HMGA2-209ENST00000539662 CELF2O95319 508 aaKnown RBP13.25□□□□□ -0.29
HMGA2-209ENST00000539662 DBNDD2Q9BQY9 259 aa13.25□□□□□ -0.29
HMGA2-209ENST00000539662 SPDYE2BA6NHP3 402 aa13.24□□□□□ -0.29
HMGA2-209ENST00000539662 SPDYE6P0CI01 402 aa13.24□□□□□ -0.29
HMGA2-209ENST00000539662 OS9Q13438 667 aaPredicted RBP13.24□□□□□ -0.29
HMGA2-209ENST00000539662 RASGRF1Q13972 1273 aa13.24□□□□□ -0.29
HMGA2-209ENST00000539662 DLGAP5Q15398 846 aa13.24□□□□□ -0.29
HMGA2-209ENST00000539662 TNNI3KQ59H18 835 aa13.24□□□□□ -0.29
HMGA2-209ENST00000539662 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.24□□□□□ -0.29
HMGA2-209ENST00000539662 MTMR14Q8NCE2 650 aa13.24□□□□□ -0.29
HMGA2-209ENST00000539662 EAF2Q96CJ1 260 aaPredicted RBP13.24□□□□□ -0.29
HMGA2-209ENST00000539662 CDCA5Q96FF9 252 aa13.24□□□□□ -0.29
HMGA2-209ENST00000539662 HDAC9Q9UKV0 1011 aa13.24□□□□□ -0.29
HMGA2-209ENST00000539662 FPGT-TNNI3KV9GXZ4 949 aa13.24□□□□□ -0.29
HMGA2-209ENST00000539662 APBB1O00213 710 aa13.23□□□□□ -0.29
HMGA2-209ENST00000539662 PRDX5P30044 214 aa13.23□□□□□ -0.29
HMGA2-209ENST00000539662 CRKP46108 304 aa13.23□□□□□ -0.29
HMGA2-209ENST00000539662 RBM5P52756 815 aaKnown RBP eCLIP13.23□□□□□ -0.29
HMGA2-209ENST00000539662 MOB2Q70IA6 237 aa13.23□□□□□ -0.29
HMGA2-209ENST00000539662 SULF1Q8IWU6 871 aa13.23□□□□□ -0.29
HMGA2-209ENST00000539662 CRBNQ96SW2 442 aa13.23□□□□□ -0.29
HMGA2-209ENST00000539662 CCDC8Q9H0W5 538 aaPredicted RBP13.23□□□□□ -0.29
HMGA2-209ENST00000539662 ABT1Q9ULW3 272 aaKnown RBP13.23□□□□□ -0.29
HMGA2-209ENST00000539662 FZD1Q9UP38 647 aa13.23□□□□□ -0.29
HMGA2-209ENST00000539662 AKAP2Q9Y2D5 859 aa13.23□□□□□ -0.29
HMGA2-209ENST00000539662 AKAP11Q9UKA4 1901 aa13.23□□□□□ -0.29
HMGA2-209ENST00000539662 MYO5AQ9Y4I1 1855 aaKnown RBP13.23□□□□□ -0.29
HMGA2-209ENST00000539662 CNTNAP1P78357 1384 aa13.22□□□□□ -0.29
HMGA2-209ENST00000539662 KCNA4P22459 653 aa13.22□□□□□ -0.29
HMGA2-209ENST00000539662 VEGFBP49765 207 aa13.22□□□□□ -0.29
HMGA2-209ENST00000539662 DIXDC1Q155Q3 683 aa13.22□□□□□ -0.29
HMGA2-209ENST00000539662 TBC1D9Q6ZT07 1266 aa13.22□□□□□ -0.29
HMGA2-209ENST00000539662 CDAN1Q8IWY9 1227 aa13.22□□□□□ -0.29
HMGA2-209ENST00000539662 RPAP2Q8IXW5 612 aaPredicted RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms