RNA–Protein interactions for RNA: ENST00000534389.2

CSDE1-216, Transcript of cold shock domain containing E1, humanhuman

TSL 4

Gene CSDE1, Length 601 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-216ENST00000534389 A0A0U1RQG5 324 aaPredicted RBP4.24□□□□□ -1.73
CSDE1-216ENST00000534389 TMEM238LA0A1B0GVL6 79 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 FAM181BA6NEQ2 426 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 SHISA8B8ZZ34 492 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 ARHGEF15O94989 841 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 IGHA2P01877 340 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 NEFMP07197 916 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 XRCC5P13010 732 aaKnown RBP4.24□□□□□ -1.73
CSDE1-216ENST00000534389 DAB2P98082 770 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 HNRNPUQ00839 825 aaKnown RBP eCLIP4.24□□□□□ -1.73
CSDE1-216ENST00000534389 PPP2R3AQ06190 1150 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 IKBKEQ14164 716 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 KIAA0319Q5VV43 1072 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 CACTIN-AS1Q8N1I8 211 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 FAM43AQ8N2R8 423 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 TMEM102Q8N9M5 508 aaPredicted RBP4.24□□□□□ -1.73
CSDE1-216ENST00000534389 DCAF11Q8TEB1 546 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 BSNDQ8WZ55 320 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 FRAT1Q92837 279 aaPredicted RBP4.24□□□□□ -1.73
CSDE1-216ENST00000534389 BTBD6Q96KE9 485 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 LPIN3Q9BQK8 851 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 MUC3BQ9H195 1237 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 NAGPAQ9UK23 515 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 TRIM33Q9UPN9 1127 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 PPME1Q9Y570 386 aa4.24□□□□□ -1.73
CSDE1-216ENST00000534389 A0A096LPE4 126 aa4.23□□□□□ -1.73
CSDE1-216ENST00000534389 A0A1W2PPZ6 126 aa4.23□□□□□ -1.73
CSDE1-216ENST00000534389 METTL12A8MUP2 240 aa4.23□□□□□ -1.73
CSDE1-216ENST00000534389 ALBP02768 609 aa4.23□□□□□ -1.73
CSDE1-216ENST00000534389 HOXD8P13378 290 aaPredicted RBP4.23□□□□□ -1.73
CSDE1-216ENST00000534389 ZNF157P51786 506 aaPredicted RBP4.23□□□□□ -1.73
CSDE1-216ENST00000534389 RAC1P63000 192 aa4.23□□□□□ -1.73
CSDE1-216ENST00000534389 CCDC85BQ15834 202 aaPredicted RBP4.23□□□□□ -1.73
CSDE1-216ENST00000534389 PEAR1Q5VY43 1037 aaPredicted RBP4.23□□□□□ -1.73
CSDE1-216ENST00000534389 TXNDC11Q6PKC3 985 aa4.23□□□□□ -1.73
CSDE1-216ENST00000534389 TPTE2Q6XPS3 522 aa4.23□□□□□ -1.73
CSDE1-216ENST00000534389 KRTAP1-3Q8IUG1 177 aa4.23□□□□□ -1.73
CSDE1-216ENST00000534389 CCNJLQ8IV13 435 aa4.23□□□□□ -1.73
CSDE1-216ENST00000534389 DMRTC2Q8IXT2 367 aaPredicted RBP4.23□□□□□ -1.73
CSDE1-216ENST00000534389 NXPE3Q969Y0 559 aa4.23□□□□□ -1.73
CSDE1-216ENST00000534389 CRELD1Q96HD1 420 aa4.23□□□□□ -1.73
CSDE1-216ENST00000534389 HHIPQ96QV1 700 aa4.23□□□□□ -1.73
CSDE1-216ENST00000534389 SIN3AQ96ST3 1273 aa4.23□□□□□ -1.73
CSDE1-216ENST00000534389 POP1Q99575 1024 aaKnown RBP4.23□□□□□ -1.73
CSDE1-216ENST00000534389 SH2B1Q9NRF2 756 aaPredicted RBP4.23□□□□□ -1.73
CSDE1-216ENST00000534389 LRRC4BQ9NT99 713 aa4.23□□□□□ -1.73
CSDE1-216ENST00000534389 STK17AQ9UEE5 414 aa4.23□□□□□ -1.73
CSDE1-216ENST00000534389 MKL2Q9ULH7 1088 aa4.23□□□□□ -1.73
CSDE1-216ENST00000534389 SAMM50Q9Y512 469 aa4.23□□□□□ -1.73
CSDE1-216ENST00000534389 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP4.23□□□□□ -1.73
CSDE1-216ENST00000534389 ABCC8Q09428 1581 aa4.23□□□□□ -1.73
CSDE1-216ENST00000534389 SOGA1O94964 1423 aa4.22□□□□□ -1.73
CSDE1-216ENST00000534389 RUSC2Q8N2Y8 1516 aa4.22□□□□□ -1.73
CSDE1-216ENST00000534389 WDR97A6NE52 1622 aa4.22□□□□□ -1.73
CSDE1-216ENST00000534389 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.22□□□□□ -1.73
CSDE1-216ENST00000534389 LINC01387J3KSC0 135 aa4.22□□□□□ -1.73
CSDE1-216ENST00000534389 EIF4EBP3O60516 100 aaPredicted RBP4.22□□□□□ -1.73
CSDE1-216ENST00000534389 FBXO24O75426 580 aa4.22□□□□□ -1.73
CSDE1-216ENST00000534389 ANP32AP39687 249 aaKnown RBP4.22□□□□□ -1.73
CSDE1-216ENST00000534389 GRIA4P48058 902 aa4.22□□□□□ -1.73
CSDE1-216ENST00000534389 GSTM4Q03013 218 aa4.22□□□□□ -1.73
CSDE1-216ENST00000534389 TRIM28Q13263 835 aaKnown RBP4.22□□□□□ -1.73
CSDE1-216ENST00000534389 TAF1CQ15572 869 aaPredicted RBP4.22□□□□□ -1.73
CSDE1-216ENST00000534389 SPRED3Q2MJR0 410 aa4.22□□□□□ -1.73
CSDE1-216ENST00000534389 PRRT3Q5FWE3 981 aa4.22□□□□□ -1.73
CSDE1-216ENST00000534389 C8orf86Q6ZUL3 223 aa4.22□□□□□ -1.73
CSDE1-216ENST00000534389 MDFIQ99750 246 aa4.22□□□□□ -1.73
CSDE1-216ENST00000534389 OSBPL7Q9BZF2 842 aa4.22□□□□□ -1.73
CSDE1-216ENST00000534389 CEP44Q9C0F1 390 aa4.22□□□□□ -1.73
CSDE1-216ENST00000534389 CLEC4MQ9H2X3 399 aaPredicted RBP4.22□□□□□ -1.73
CSDE1-216ENST00000534389 CBX8Q9HC52 389 aa4.22□□□□□ -1.73
CSDE1-216ENST00000534389 RNF19AQ9NV58 838 aa4.22□□□□□ -1.73
CSDE1-216ENST00000534389 USP35Q9P2H5 1018 aa4.22□□□□□ -1.73
CSDE1-216ENST00000534389 PRDM4Q9UKN5 801 aa4.22□□□□□ -1.73
CSDE1-216ENST00000534389 ADAMTS8Q9UP79 889 aa4.22□□□□□ -1.73
CSDE1-216ENST00000534389 MAPKBP1O60336 1514 aa4.21□□□□□ -1.73
CSDE1-216ENST00000534389 SCAMP3O14828 347 aaKnown RBP4.21□□□□□ -1.74
CSDE1-216ENST00000534389 ZNF76P36508 570 aa4.21□□□□□ -1.74
CSDE1-216ENST00000534389 AFF1P51825 1210 aaKnown RBP4.21□□□□□ -1.74
CSDE1-216ENST00000534389 PCDH1Q08174 1060 aa4.21□□□□□ -1.74
CSDE1-216ENST00000534389 SUZ12Q15022 739 aaKnown RBP4.21□□□□□ -1.74
CSDE1-216ENST00000534389 MAP3K11Q16584 847 aa4.21□□□□□ -1.74
CSDE1-216ENST00000534389 CCDC184Q52MB2 194 aa4.21□□□□□ -1.74
CSDE1-216ENST00000534389 MSL1Q68DK7 614 aa4.21□□□□□ -1.74
CSDE1-216ENST00000534389 PRPF40BQ6NWY9 871 aaKnown RBP4.21□□□□□ -1.74
CSDE1-216ENST00000534389 HS2ST1Q7LGA3 356 aa4.21□□□□□ -1.74
CSDE1-216ENST00000534389 BEND7Q8N7W2 519 aaPredicted RBP4.21□□□□□ -1.74
CSDE1-216ENST00000534389 TCF12Q99081 682 aa4.21□□□□□ -1.74
CSDE1-216ENST00000534389 HIRIP3Q9BW71 556 aaPredicted RBP4.21□□□□□ -1.74
CSDE1-216ENST00000534389 USP26Q9BXU7 913 aa4.21□□□□□ -1.74
CSDE1-216ENST00000534389 BACH2Q9BYV9 841 aa4.21□□□□□ -1.74
CSDE1-216ENST00000534389 BHLHE41Q9C0J9 482 aaPredicted RBP4.21□□□□□ -1.74
CSDE1-216ENST00000534389 ABCB6Q9NP58 842 aa4.21□□□□□ -1.74
CSDE1-216ENST00000534389 NOP53Q9NZM5 478 aaKnown RBP4.21□□□□□ -1.74
CSDE1-216ENST00000534389 CCDC88BA6NC98 1476 aa4.21□□□□□ -1.74
CSDE1-216ENST00000534389 CUX2O14529 1486 aa4.21□□□□□ -1.74
CSDE1-216ENST00000534389 CLIP1P30622 1438 aa4.21□□□□□ -1.74
CSDE1-216ENST00000534389 EEA1Q15075 1411 aa4.21□□□□□ -1.74
CSDE1-216ENST00000534389 BAZ1BQ9UIG0 1483 aaKnown RBP4.2□□□□□ -1.74
CSDE1-216ENST00000534389 UNCXA6NJT0 531 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 10.9 ms