RNA–Protein interactions for RNA: ENST00000531873.5

CD44-234, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 584 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-234ENST00000531873 KLF15Q9UIH9 416 aa4.65□□□□□ -1.67
CD44-234ENST00000531873 PCDHGC4Q9Y5F7 938 aa4.65□□□□□ -1.67
CD44-234ENST00000531873 FGRP09769 529 aa4.64□□□□□ -1.67
CD44-234ENST00000531873 H2AFB1P0C5Y9 115 aa4.64□□□□□ -1.67
CD44-234ENST00000531873 H2AFB2P0C5Z0 115 aa4.64□□□□□ -1.67
CD44-234ENST00000531873 NFKB1P19838 968 aa4.64□□□□□ -1.67
CD44-234ENST00000531873 ADH6P28332 368 aa4.64□□□□□ -1.67
CD44-234ENST00000531873 SOX18P35713 384 aa4.64□□□□□ -1.67
CD44-234ENST00000531873 LAMC2Q13753 1193 aa4.64□□□□□ -1.67
CD44-234ENST00000531873 RAB44Q7Z6P3 723 aaPredicted RBP4.64□□□□□ -1.67
CD44-234ENST00000531873 ANKRD24Q8TF21 1146 aa4.64□□□□□ -1.67
CD44-234ENST00000531873 DHX38Q92620 1227 aaKnown RBP4.64□□□□□ -1.67
CD44-234ENST00000531873 DNAJC2Q99543 621 aaKnown RBP4.64□□□□□ -1.67
CD44-234ENST00000531873 SLC30A3Q99726 388 aa4.64□□□□□ -1.67
CD44-234ENST00000531873 ZKSCAN3Q9BRR0 538 aa4.64□□□□□ -1.67
CD44-234ENST00000531873 NOC4LQ9BVI4 516 aaKnown RBP4.64□□□□□ -1.67
CD44-234ENST00000531873 EHD4Q9H223 541 aa4.64□□□□□ -1.67
CD44-234ENST00000531873 KBTBD4Q9NVX7 518 aa4.64□□□□□ -1.67
CD44-234ENST00000531873 TTF2Q9UNY4 1162 aaKnown RBP4.64□□□□□ -1.67
CD44-234ENST00000531873 INPP5FQ9Y2H2 1132 aa4.64□□□□□ -1.67
CD44-234ENST00000531873 SPDYE3A6NKU9 549 aa4.63□□□□□ -1.67
CD44-234ENST00000531873 HYAL3O43820 417 aaPredicted RBP4.63□□□□□ -1.67
CD44-234ENST00000531873 DNAJA1P31689 397 aaKnown RBP4.63□□□□□ -1.67
CD44-234ENST00000531873 FCGRTP55899 365 aa4.63□□□□□ -1.67
CD44-234ENST00000531873 SPEM2Q0P670 501 aa4.63□□□□□ -1.67
CD44-234ENST00000531873 PAK2Q13177 524 aa4.63□□□□□ -1.67
CD44-234ENST00000531873 FCHSD1Q86WN1 690 aa4.63□□□□□ -1.67
CD44-234ENST00000531873 MCF2L2Q86YR7 1114 aa4.63□□□□□ -1.67
CD44-234ENST00000531873 CCNJLQ8IV13 435 aa4.63□□□□□ -1.67
CD44-234ENST00000531873 HHIPQ96QV1 700 aa4.63□□□□□ -1.67
CD44-234ENST00000531873 LIN7BQ9HAP6 207 aa4.63□□□□□ -1.67
CD44-234ENST00000531873 TLR7Q9NYK1 1049 aaKnown RBP4.63□□□□□ -1.67
CD44-234ENST00000531873 TRAK1Q9UPV9 953 aa4.63□□□□□ -1.67
CD44-234ENST00000531873 GTF3C5Q9Y5Q8 519 aaPredicted RBP4.63□□□□□ -1.67
CD44-234ENST00000531873 TMEM238LA0A1B0GVL6 79 aa4.62□□□□□ -1.67
CD44-234ENST00000531873 F6X3S4 739 aa4.62□□□□□ -1.67
CD44-234ENST00000531873 NFKBIEO00221 500 aa4.62□□□□□ -1.67
CD44-234ENST00000531873 FBXO24O75426 580 aa4.62□□□□□ -1.67
CD44-234ENST00000531873 TRPA1O75762 1119 aa4.62□□□□□ -1.67
CD44-234ENST00000531873 MAP3K6O95382 1288 aa4.62□□□□□ -1.67
CD44-234ENST00000531873 CD33P20138 364 aa4.62□□□□□ -1.67
CD44-234ENST00000531873 GRIA4P48058 902 aa4.62□□□□□ -1.67
CD44-234ENST00000531873 GNL2Q13823 731 aaKnown RBP4.62□□□□□ -1.67
CD44-234ENST00000531873 PRRT3Q5FWE3 981 aa4.62□□□□□ -1.67
CD44-234ENST00000531873 DHX32Q7L7V1 743 aaKnown RBP4.62□□□□□ -1.67
CD44-234ENST00000531873 CEP120Q8N960 986 aa4.62□□□□□ -1.67
CD44-234ENST00000531873 ARMC5Q96C12 935 aa4.62□□□□□ -1.67
CD44-234ENST00000531873 RHOVQ96L33 236 aa4.62□□□□□ -1.67
CD44-234ENST00000531873 RSRP1Q9BUV0 290 aa4.62□□□□□ -1.67
CD44-234ENST00000531873 DZANK1Q9NVP4 752 aa4.62□□□□□ -1.67
CD44-234ENST00000531873 MARK1Q9P0L2 795 aa4.62□□□□□ -1.67
CD44-234ENST00000531873 ADAMTS1Q9UHI8 967 aa4.62□□□□□ -1.67
CD44-234ENST00000531873 PPM1HQ9ULR3 514 aa4.62□□□□□ -1.67
CD44-234ENST00000531873 METTL12A8MUP2 240 aa4.61□□□□□ -1.67
CD44-234ENST00000531873 APBA3O96018 575 aa4.61□□□□□ -1.67
CD44-234ENST00000531873 CELA3AP09093 270 aa4.61□□□□□ -1.67
CD44-234ENST00000531873 ATF4P18848 351 aaPredicted RBP4.61□□□□□ -1.67
CD44-234ENST00000531873 ATP2B1P20020 1258 aa4.61□□□□□ -1.67
CD44-234ENST00000531873 ITPKAP23677 461 aa4.61□□□□□ -1.67
CD44-234ENST00000531873 PLAURQ03405 335 aa4.61□□□□□ -1.67
CD44-234ENST00000531873 ARID5AQ03989 594 aa4.61□□□□□ -1.67
CD44-234ENST00000531873 CCDC85BQ15834 202 aaPredicted RBP4.61□□□□□ -1.67
CD44-234ENST00000531873 DPH6Q7L8W6 267 aa4.61□□□□□ -1.67
CD44-234ENST00000531873 FAM177A1Q8N128 213 aaPredicted RBP4.61□□□□□ -1.67
CD44-234ENST00000531873 RASGRP4Q8TDF6 673 aa4.61□□□□□ -1.67
CD44-234ENST00000531873 BHMTQ93088 406 aa4.61□□□□□ -1.67
CD44-234ENST00000531873 GPRASP2Q96D09 838 aa4.61□□□□□ -1.67
CD44-234ENST00000531873 NSUN5Q96P11 429 aaKnown RBP4.61□□□□□ -1.67
CD44-234ENST00000531873 PNMA5Q96PV4 448 aa4.61□□□□□ -1.67
CD44-234ENST00000531873 OSMRQ99650 979 aa4.61□□□□□ -1.67
CD44-234ENST00000531873 LNPKQ9C0E8 428 aa4.61□□□□□ -1.67
CD44-234ENST00000531873 BHLHE41Q9C0J9 482 aaPredicted RBP4.61□□□□□ -1.67
CD44-234ENST00000531873 EFCC1Q9HA90 598 aa4.61□□□□□ -1.67
CD44-234ENST00000531873 ZBTB42B2RXF5 422 aa4.6□□□□□ -1.67
CD44-234ENST00000531873 ENC1O14682 589 aa4.6□□□□□ -1.67
CD44-234ENST00000531873 PSAPP07602 524 aa4.6□□□□□ -1.67
CD44-234ENST00000531873 XRCC5P13010 732 aaKnown RBP4.6□□□□□ -1.67
CD44-234ENST00000531873 GARTP22102 1010 aa4.6□□□□□ -1.67
CD44-234ENST00000531873 GTF2F1P35269 517 aaKnown RBP eCLIP4.6□□□□□ -1.67
CD44-234ENST00000531873 NRLP54845 237 aa4.6□□□□□ -1.67
CD44-234ENST00000531873 GPLD1P80108 840 aa4.6□□□□□ -1.67
CD44-234ENST00000531873 HYAL2Q12891 473 aa4.6□□□□□ -1.67
CD44-234ENST00000531873 SPRED3Q2MJR0 410 aa4.6□□□□□ -1.67
CD44-234ENST00000531873 MCTP1Q6DN14 999 aa4.6□□□□□ -1.67
CD44-234ENST00000531873 ADAMTSL4Q6UY14 1074 aa4.6□□□□□ -1.67
CD44-234ENST00000531873 DTHD1Q6ZMT9 781 aa4.6□□□□□ -1.67
CD44-234ENST00000531873 NCAPG2Q86XI2 1143 aa4.6□□□□□ -1.67
CD44-234ENST00000531873 NACC1Q96RE7 527 aa4.6□□□□□ -1.67
CD44-234ENST00000531873 MDFIQ99750 246 aa4.6□□□□□ -1.67
CD44-234ENST00000531873 KCNQ5Q9NR82 932 aa4.6□□□□□ -1.67
CD44-234ENST00000531873 SMARCA5O60264 1052 aaPredicted RBP4.59□□□□□ -1.67
CD44-234ENST00000531873 ATP11AP98196 1134 aa4.59□□□□□ -1.67
CD44-234ENST00000531873 FAAP100Q0VG06 881 aa4.59□□□□□ -1.67
CD44-234ENST00000531873 COL9A3Q14050 684 aaPredicted RBP4.59□□□□□ -1.67
CD44-234ENST00000531873 ZNF468Q5VIY5 522 aaPredicted RBP4.59□□□□□ -1.67
CD44-234ENST00000531873 GIMAP6Q6P9H5 292 aa4.59□□□□□ -1.67
CD44-234ENST00000531873 TPTE2Q6XPS3 522 aa4.59□□□□□ -1.67
CD44-234ENST00000531873 SV2BQ7L1I2 683 aa4.59□□□□□ -1.67
CD44-234ENST00000531873 KIAA0825Q8IV33 1275 aa4.59□□□□□ -1.67
CD44-234ENST00000531873 TMEM102Q8N9M5 508 aaPredicted RBP4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms