RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 ZNF512BQ96KM6 892 aaPredicted RBP17.81■□□□□ 0.44
CPSF1-206ENST00000531480 GPRC5DQ9NZD1 345 aa17.81■□□□□ 0.44
CPSF1-206ENST00000531480 DBNLQ9UJU6 430 aaKnown RBP17.81■□□□□ 0.44
CPSF1-206ENST00000531480 GJA3Q9Y6H8 435 aa17.81■□□□□ 0.44
CPSF1-206ENST00000531480 TOMM70O94826 608 aa17.8■□□□□ 0.44
CPSF1-206ENST00000531480 ARID4AP29374 1257 aaPredicted RBP17.8■□□□□ 0.44
CPSF1-206ENST00000531480 GTF2IP78347 998 aa17.8■□□□□ 0.44
CPSF1-206ENST00000531480 CERS5Q8N5B7 392 aa17.8■□□□□ 0.44
CPSF1-206ENST00000531480 GCC1Q96CN9 775 aa17.8■□□□□ 0.44
CPSF1-206ENST00000531480 NEUROD6Q96NK8 337 aa17.8■□□□□ 0.44
CPSF1-206ENST00000531480 LRRCC1Q9C099 1032 aa17.8■□□□□ 0.44
CPSF1-206ENST00000531480 RRAGCQ9HB90 399 aa17.8■□□□□ 0.44
CPSF1-206ENST00000531480 ZBTB12Q9Y330 459 aaPredicted RBP17.8■□□□□ 0.44
CPSF1-206ENST00000531480 ZNF280AP59817 542 aaPredicted RBP17.79■□□□□ 0.44
CPSF1-206ENST00000531480 SMC5Q8IY18 1101 aa17.79■□□□□ 0.44
CPSF1-206ENST00000531480 CLASRPQ8N2M8 674 aaKnown RBP17.79■□□□□ 0.44
CPSF1-206ENST00000531480 DBNDD2Q9BQY9 259 aa17.79■□□□□ 0.44
CPSF1-206ENST00000531480 RWDD1Q9H446 243 aaPredicted RBP17.79■□□□□ 0.44
CPSF1-206ENST00000531480 GNL3LQ9NVN8 582 aaKnown RBP17.79■□□□□ 0.44
CPSF1-206ENST00000531480 HACL1Q9UJ83 578 aa17.79■□□□□ 0.44
CPSF1-206ENST00000531480 SALL1Q9NSC2 1324 aa17.78■□□□□ 0.44
CPSF1-206ENST00000531480 IGHDP01880 384 aa17.78■□□□□ 0.44
CPSF1-206ENST00000531480 TAF1DQ9H5J8 278 aaPredicted RBP17.78■□□□□ 0.44
CPSF1-206ENST00000531480 IL1RAPL2Q9NP60 686 aa17.78■□□□□ 0.44
CPSF1-206ENST00000531480 TLR7Q9NYK1 1049 aaKnown RBP17.78■□□□□ 0.44
CPSF1-206ENST00000531480 DENND2AQ9ULE3 1009 aa17.78■□□□□ 0.44
CPSF1-206ENST00000531480 EPS15P42566 896 aa17.77■□□□□ 0.44
CPSF1-206ENST00000531480 RASGRF1Q13972 1273 aa17.77■□□□□ 0.44
CPSF1-206ENST00000531480 AACSQ86V21 672 aa17.77■□□□□ 0.44
CPSF1-206ENST00000531480 TBC1D22AQ8WUA7 517 aa17.77■□□□□ 0.44
CPSF1-206ENST00000531480 MXD3Q9BW11 206 aa17.77■□□□□ 0.44
CPSF1-206ENST00000531480 CCDC8Q9H0W5 538 aaPredicted RBP17.77■□□□□ 0.44
CPSF1-206ENST00000531480 CNOT7Q9UIV1 285 aaKnown RBP17.77■□□□□ 0.44
CPSF1-206ENST00000531480 IQSEC3Q9UPP2 1182 aaPredicted RBP17.77■□□□□ 0.44
CPSF1-206ENST00000531480 UQCRFS1P1P0C7P4 283 aa17.76■□□□□ 0.43
CPSF1-206ENST00000531480 LMOD1P29536 600 aaPredicted RBP17.76■□□□□ 0.43
CPSF1-206ENST00000531480 EPHX2P34913 555 aa17.76■□□□□ 0.43
CPSF1-206ENST00000531480 MFSD14BQ5SR56 506 aa17.76■□□□□ 0.43
CPSF1-206ENST00000531480 MICALL2Q8IY33 904 aa17.76■□□□□ 0.43
CPSF1-206ENST00000531480 WDR66Q8TBY9 1149 aa17.76■□□□□ 0.43
CPSF1-206ENST00000531480 SUGT1Q9Y2Z0 365 aa17.76■□□□□ 0.43
CPSF1-206ENST00000531480 APBB1O00213 710 aa17.75■□□□□ 0.43
CPSF1-206ENST00000531480 USP17L8P0C7I0 530 aa17.75■□□□□ 0.43
CPSF1-206ENST00000531480 MCAMP43121 646 aa17.75■□□□□ 0.43
CPSF1-206ENST00000531480 CCDC158Q5M9N0 1113 aa17.75■□□□□ 0.43
CPSF1-206ENST00000531480 ADARB2Q9NS39 739 aaKnown RBP17.75■□□□□ 0.43
CPSF1-206ENST00000531480 SHTN1A0MZ66 631 aa17.74■□□□□ 0.43
CPSF1-206ENST00000531480 SCARF1Q14162 830 aa17.74■□□□□ 0.43
CPSF1-206ENST00000531480 GORABQ5T7V8 394 aa17.74■□□□□ 0.43
CPSF1-206ENST00000531480 USP50Q70EL3 339 aaPredicted RBP17.74■□□□□ 0.43
CPSF1-206ENST00000531480 PNMA8AQ86V59 439 aaPredicted RBP17.74■□□□□ 0.43
CPSF1-206ENST00000531480 RBM46Q8TBY0 533 aaKnown RBP17.74■□□□□ 0.43
CPSF1-206ENST00000531480 PPIL4Q8WUA2 492 aaKnown RBP eCLIP17.74■□□□□ 0.43
CPSF1-206ENST00000531480 MRIQ9BWK5 157 aa17.74■□□□□ 0.43
CPSF1-206ENST00000531480 HMG20BQ9P0W2 317 aa17.74■□□□□ 0.43
CPSF1-206ENST00000531480 ECM29Q5VYK3 1845 aa17.74■□□□□ 0.43
CPSF1-206ENST00000531480 DOCK2Q92608 1830 aa17.73■□□□□ 0.43
CPSF1-206ENST00000531480 H7C1D1 291 aa17.73■□□□□ 0.43
CPSF1-206ENST00000531480 SMARCA5O60264 1052 aaPredicted RBP17.73■□□□□ 0.43
CPSF1-206ENST00000531480 FRAT2O75474 233 aaPredicted RBP17.73■□□□□ 0.43
CPSF1-206ENST00000531480 IFIT2P09913 472 aaKnown RBP17.73■□□□□ 0.43
CPSF1-206ENST00000531480 ERICH6BQ5W0A0 696 aa17.73■□□□□ 0.43
CPSF1-206ENST00000531480 SPATA5Q8NB90 893 aa17.73■□□□□ 0.43
CPSF1-206ENST00000531480 MTMR14Q8NCE2 650 aa17.73■□□□□ 0.43
CPSF1-206ENST00000531480 ZBED3Q96IU2 234 aaPredicted RBP17.73■□□□□ 0.43
CPSF1-206ENST00000531480 PGAP2Q9UHJ9 254 aa17.73■□□□□ 0.43
CPSF1-206ENST00000531480 JAG2Q9Y219 1238 aa17.73■□□□□ 0.43
CPSF1-206ENST00000531480 SALL3Q9BXA9 1300 aa17.72■□□□□ 0.43
CPSF1-206ENST00000531480 MYO5AQ9Y4I1 1855 aaKnown RBP17.72■□□□□ 0.43
CPSF1-206ENST00000531480 IGSF3O75054 1194 aa17.72■□□□□ 0.43
CPSF1-206ENST00000531480 HIRAP54198 1017 aaPredicted RBP17.72■□□□□ 0.43
CPSF1-206ENST00000531480 HTRA3P83110 453 aa17.72■□□□□ 0.43
CPSF1-206ENST00000531480 HDLBPQ00341 1268 aaKnown RBP17.72■□□□□ 0.43
CPSF1-206ENST00000531480 CHAF1AQ13111 956 aaPredicted RBP17.72■□□□□ 0.43
CPSF1-206ENST00000531480 GRIK5Q16478 980 aa17.72■□□□□ 0.43
CPSF1-206ENST00000531480 FBXW7Q969H0 707 aa17.72■□□□□ 0.43
CPSF1-206ENST00000531480 EGFRP00533 1210 aa17.71■□□□□ 0.43
CPSF1-206ENST00000531480 APLP1P51693 650 aa17.71■□□□□ 0.43
CPSF1-206ENST00000531480 TTC39AQ5SRH9 613 aa17.71■□□□□ 0.43
CPSF1-206ENST00000531480 PI16Q6UXB8 463 aa17.71■□□□□ 0.43
CPSF1-206ENST00000531480 KIAA0825Q8IV33 1275 aa17.71■□□□□ 0.43
CPSF1-206ENST00000531480 ZGPATQ8N5A5 531 aaKnown RBP17.71■□□□□ 0.43
CPSF1-206ENST00000531480 TRPM4Q8TD43 1214 aa17.71■□□□□ 0.43
CPSF1-206ENST00000531480 ZC3H15Q8WU90 426 aaKnown RBP17.71■□□□□ 0.43
CPSF1-206ENST00000531480 MYOZ2Q9NPC6 264 aa17.71■□□□□ 0.43
CPSF1-206ENST00000531480 ATP5JP18859 108 aa17.7■□□□□ 0.42
CPSF1-206ENST00000531480 NUCB1Q02818 461 aa17.7■□□□□ 0.42
CPSF1-206ENST00000531480 SAMD7Q7Z3H4 446 aa17.7■□□□□ 0.42
CPSF1-206ENST00000531480 LDHDQ86WU2 507 aa17.7■□□□□ 0.42
CPSF1-206ENST00000531480 OGFOD1Q8N543 542 aa17.7■□□□□ 0.42
CPSF1-206ENST00000531480 SERPINA10Q9UK55 444 aa17.7■□□□□ 0.42
CPSF1-206ENST00000531480 MAST2Q6P0Q8 1798 aa17.7■□□□□ 0.42
CPSF1-206ENST00000531480 CEP350Q5VT06 3117 aa17.7■□□□□ 0.42
CPSF1-206ENST00000531480 POTEIP0CG38 1075 aa17.69■□□□□ 0.42
CPSF1-206ENST00000531480 POTEJP0CG39 1038 aa17.69■□□□□ 0.42
CPSF1-206ENST00000531480 PRDX5P30044 214 aa17.69■□□□□ 0.42
CPSF1-206ENST00000531480 KIF4BQ2VIQ3 1234 aa17.69■□□□□ 0.42
CPSF1-206ENST00000531480 ANKRD45Q5TZF3 282 aa17.69■□□□□ 0.42
CPSF1-206ENST00000531480 HDAC9Q9UKV0 1011 aa17.69■□□□□ 0.42
CPSF1-206ENST00000531480 MAST3O60307 1309 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 180.9 ms