RNA–Protein interactions for RNA: ENST00000530304.5

PCF11-203, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 1 (best)

Gene PCF11, Length 2,649 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-203ENST00000530304 ERCC4Q92889 916 aaPredicted RBP22.74■■□□□ 1.23
PCF11-203ENST00000530304 ADALQ6DHV7 355 aa22.74■■□□□ 1.23
PCF11-203ENST00000530304 OTUD7BQ6GQQ9 843 aa22.74■■□□□ 1.23
PCF11-203ENST00000530304 FMR1NBQ8N0W7 255 aaPredicted RBP22.74■■□□□ 1.23
PCF11-203ENST00000530304 ISCA1Q9BUE6 129 aa22.74■■□□□ 1.23
PCF11-203ENST00000530304 AKAP2Q9Y2D5 859 aa22.74■■□□□ 1.23
PCF11-203ENST00000530304 TNNT1P13805 278 aa22.73■■□□□ 1.23
PCF11-203ENST00000530304 CADPS2Q86UW7 1296 aa22.73■■□□□ 1.23
PCF11-203ENST00000530304 MRPS27Q92552 414 aaKnown RBP22.73■■□□□ 1.23
PCF11-203ENST00000530304 NWD2Q9ULI1 1742 aa22.73■■□□□ 1.23
PCF11-203ENST00000530304 ZFYP08048 801 aaPredicted RBP22.73■■□□□ 1.23
PCF11-203ENST00000530304 SCARF1Q14162 830 aa22.73■■□□□ 1.23
PCF11-203ENST00000530304 WDR17Q8IZU2 1322 aa22.72■■□□□ 1.23
PCF11-203ENST00000530304 CCDC85AQ96PX6 553 aaPredicted RBP22.72■■□□□ 1.23
PCF11-203ENST00000530304 A0A1B0GVL5 298 aa22.72■■□□□ 1.23
PCF11-203ENST00000530304 PRC1O43663 620 aa22.72■■□□□ 1.23
PCF11-203ENST00000530304 TCIRG1Q13488 830 aa22.72■■□□□ 1.23
PCF11-203ENST00000530304 ARID5BQ14865 1188 aa22.72■■□□□ 1.23
PCF11-203ENST00000530304 LINC00301Q8NCQ3 95 aa22.72■■□□□ 1.23
PCF11-203ENST00000530304 C8orf76Q96K31 380 aa22.72■■□□□ 1.23
PCF11-203ENST00000530304 PUS7LQ9H0K6 701 aaKnown RBP22.72■■□□□ 1.23
PCF11-203ENST00000530304 POLR3DP05423 398 aaPredicted RBP22.71■■□□□ 1.23
PCF11-203ENST00000530304 ZAP70P43403 619 aa22.71■■□□□ 1.23
PCF11-203ENST00000530304 NKX1-1Q15270 411 aaPredicted RBP22.71■■□□□ 1.23
PCF11-203ENST00000530304 TPD52L1Q16890 204 aaPredicted RBP22.71■■□□□ 1.23
PCF11-203ENST00000530304 CLIC4Q9Y696 253 aa22.71■■□□□ 1.23
PCF11-203ENST00000530304 KLF18A0A0U1RQI7 1052 aa22.71■■□□□ 1.23
PCF11-203ENST00000530304 HSP90AB3PQ58FF7 597 aa22.71■■□□□ 1.23
PCF11-203ENST00000530304 PPP4R3BQ5MIZ7 849 aa22.71■■□□□ 1.23
PCF11-203ENST00000530304 MB21D2Q8IYB1 491 aaPredicted RBP22.71■■□□□ 1.23
PCF11-203ENST00000530304 CEP57L1Q8IYX8 460 aa22.71■■□□□ 1.23
PCF11-203ENST00000530304 ANKRD7Q92527 254 aa22.71■■□□□ 1.23
PCF11-203ENST00000530304 SDF4Q9BRK5 362 aa22.71■■□□□ 1.23
PCF11-203ENST00000530304 FBXO3Q9UK99 471 aa22.71■■□□□ 1.23
PCF11-203ENST00000530304 HPS5Q9UPZ3 1129 aa22.71■■□□□ 1.23
PCF11-203ENST00000530304 A0A1W2PQ27 194 aa22.7■■□□□ 1.22
PCF11-203ENST00000530304 A0A1W2PQ64 194 aa22.7■■□□□ 1.22
PCF11-203ENST00000530304 A0A1W2PQD8 194 aa22.7■■□□□ 1.22
PCF11-203ENST00000530304 DHX16O60231 1041 aaKnown RBP22.7■■□□□ 1.22
PCF11-203ENST00000530304 NDUFA8P51970 172 aa22.7■■□□□ 1.22
PCF11-203ENST00000530304 APPBP2Q92624 585 aa22.7■■□□□ 1.22
PCF11-203ENST00000530304 ZNF330Q9Y3S2 320 aaPredicted RBP22.7■■□□□ 1.22
PCF11-203ENST00000530304 SMTNL1A8MU46 457 aa22.7■■□□□ 1.22
PCF11-203ENST00000530304 FBXO18Q8NFZ0 1043 aa22.7■■□□□ 1.22
PCF11-203ENST00000530304 FBXW7Q969H0 707 aa22.7■■□□□ 1.22
PCF11-203ENST00000530304 GOLGA8BA8MQT2 603 aa22.69■■□□□ 1.22
PCF11-203ENST00000530304 NEMFO60524 1076 aa22.69■■□□□ 1.22
PCF11-203ENST00000530304 STK38Q15208 465 aa22.69■■□□□ 1.22
PCF11-203ENST00000530304 SF3A1Q15459 793 aaKnown RBP22.69■■□□□ 1.22
PCF11-203ENST00000530304 PDCL2Q8N4E4 241 aa22.69■■□□□ 1.22
PCF11-203ENST00000530304 AOPEPQ8N6M6 819 aa22.69■■□□□ 1.22
PCF11-203ENST00000530304 FAM89AQ96GI7 184 aa22.69■■□□□ 1.22
PCF11-203ENST00000530304 NAT10Q9H0A0 1025 aaKnown RBP22.69■■□□□ 1.22
PCF11-203ENST00000530304 PRDM11Q9NQV5 511 aa22.69■■□□□ 1.22
PCF11-203ENST00000530304 RBM6P78332 1123 aaKnown RBP22.69■■□□□ 1.22
PCF11-203ENST00000530304 NCOA7Q8NI08 942 aa22.69■■□□□ 1.22
PCF11-203ENST00000530304 ORC3Q9UBD5 711 aaPredicted RBP22.69■■□□□ 1.22
PCF11-203ENST00000530304 STRCP1A6NGW2 1772 aa22.69■■□□□ 1.22
PCF11-203ENST00000530304 PAPPAQ13219 1627 aa22.68■■□□□ 1.22
PCF11-203ENST00000530304 ANTXR2P58335 489 aa22.68■■□□□ 1.22
PCF11-203ENST00000530304 TAF7LQ5H9L4 462 aa22.68■■□□□ 1.22
PCF11-203ENST00000530304 PI16Q6UXB8 463 aa22.68■■□□□ 1.22
PCF11-203ENST00000530304 RAB11FIP4Q86YS3 637 aa22.68■■□□□ 1.22
PCF11-203ENST00000530304 KCNG4Q8TDN1 519 aa22.68■■□□□ 1.22
PCF11-203ENST00000530304 PAXBP1Q9Y5B6 917 aa22.68■■□□□ 1.22
PCF11-203ENST00000530304 FILIP1Q7Z7B0 1213 aa22.68■■□□□ 1.22
PCF11-203ENST00000530304 GJB4Q9NTQ9 266 aa22.68■■□□□ 1.22
PCF11-203ENST00000530304 POLR3EQ9NVU0 708 aa22.68■■□□□ 1.22
PCF11-203ENST00000530304 ZNF213O14771 459 aa22.67■■□□□ 1.22
PCF11-203ENST00000530304 SMAP1Q8IYB5 467 aaPredicted RBP22.67■■□□□ 1.22
PCF11-203ENST00000530304 GPAA1O43292 621 aa22.67■■□□□ 1.22
PCF11-203ENST00000530304 YEATS4O95619 227 aa22.67■■□□□ 1.22
PCF11-203ENST00000530304 IFIT5Q13325 482 aaKnown RBP22.67■■□□□ 1.22
PCF11-203ENST00000530304 RALYLQ86SE5 291 aaKnown RBP22.67■■□□□ 1.22
PCF11-203ENST00000530304 KIAA1468Q9P260 1216 aa22.67■■□□□ 1.22
PCF11-203ENST00000530304 TNS2Q63HR2 1409 aa22.66■■□□□ 1.22
PCF11-203ENST00000530304 CPLX1O14810 134 aa22.66■■□□□ 1.22
PCF11-203ENST00000530304 SPTLC2O15270 562 aa22.66■■□□□ 1.22
PCF11-203ENST00000530304 SKILP12757 684 aa22.66■■□□□ 1.22
PCF11-203ENST00000530304 IL2RBP14784 551 aa22.66■■□□□ 1.22
PCF11-203ENST00000530304 TRIM28Q13263 835 aaKnown RBP22.66■■□□□ 1.22
PCF11-203ENST00000530304 MYSM1Q5VVJ2 828 aa22.66■■□□□ 1.22
PCF11-203ENST00000530304 PCCAP05165 728 aaPredicted RBP22.66■■□□□ 1.22
PCF11-203ENST00000530304 CSF1RP07333 972 aa22.66■■□□□ 1.22
PCF11-203ENST00000530304 BRAPQ7Z569 592 aa22.66■■□□□ 1.22
PCF11-203ENST00000530304 CCDC69A6NI79 296 aa22.65■■□□□ 1.22
PCF11-203ENST00000530304 PLA2G12BQ9BX93 195 aa22.65■■□□□ 1.22
PCF11-203ENST00000530304 USP27XA6NNY8 438 aa22.65■■□□□ 1.22
PCF11-203ENST00000530304 KIF28PB7ZC32 967 aa22.64■■□□□ 1.22
PCF11-203ENST00000530304 NCBP1Q09161 790 aaKnown RBP22.64■■□□□ 1.22
PCF11-203ENST00000530304 ATP2B3Q16720 1220 aa22.64■■□□□ 1.22
PCF11-203ENST00000530304 CEP135Q66GS9 1140 aa22.64■■□□□ 1.22
PCF11-203ENST00000530304 ZBTB38Q8NAP3 1195 aaPredicted RBP22.64■■□□□ 1.22
PCF11-203ENST00000530304 CCZ1BP86790 482 aa22.64■■□□□ 1.21
PCF11-203ENST00000530304 CCZ1P86791 482 aaPredicted RBP22.64■■□□□ 1.21
PCF11-203ENST00000530304 DPCR1Q3MIW9 517 aa22.64■■□□□ 1.21
PCF11-203ENST00000530304 SYNE3Q6ZMZ3 975 aa22.64■■□□□ 1.21
PCF11-203ENST00000530304 CCDC112Q8NEF3 446 aa22.64■■□□□ 1.21
PCF11-203ENST00000530304 ABCC12Q96J65 1359 aa22.64■■□□□ 1.21
PCF11-203ENST00000530304 NEDD4P46934 1319 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms