RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 U2AF1Q01081 240 aaKnown RBP eCLIP5.42□□□□□ -1.54
CD44-226ENST00000527889 FMR1Q06787 632 aaKnown RBP eCLIP5.42□□□□□ -1.54
CD44-226ENST00000527889 ABTB2Q8N961 1025 aa5.42□□□□□ -1.54
CD44-226ENST00000527889 CDK15Q96Q40 435 aa5.42□□□□□ -1.54
CD44-226ENST00000527889 RRP7AQ9Y3A4 280 aaKnown RBP5.42□□□□□ -1.54
CD44-226ENST00000527889 PXDNQ92626 1479 aa5.42□□□□□ -1.54
CD44-226ENST00000527889 LMO7Q8WWI1 1683 aa5.42□□□□□ -1.54
CD44-226ENST00000527889 AFF2P51816 1311 aa5.42□□□□□ -1.54
CD44-226ENST00000527889 ITGB4P16144 1822 aa5.41□□□□□ -1.54
CD44-226ENST00000527889 PLCH1Q4KWH8 1693 aa5.41□□□□□ -1.54
CD44-226ENST00000527889 SHANK3Q9BYB0 1731 aa5.41□□□□□ -1.54
CD44-226ENST00000527889 SCAMP3O14828 347 aaKnown RBP5.41□□□□□ -1.54
CD44-226ENST00000527889 ADH1CP00326 375 aa5.41□□□□□ -1.54
CD44-226ENST00000527889 HSPA6P17066 643 aa5.41□□□□□ -1.54
CD44-226ENST00000527889 ERCC5P28715 1186 aaPredicted RBP5.41□□□□□ -1.54
CD44-226ENST00000527889 SCNN1DP51172 638 aa5.41□□□□□ -1.54
CD44-226ENST00000527889 HDLBPQ00341 1268 aaKnown RBP5.41□□□□□ -1.54
CD44-226ENST00000527889 ARID5BQ14865 1188 aa5.41□□□□□ -1.54
CD44-226ENST00000527889 KRT28Q7Z3Y7 464 aa5.41□□□□□ -1.54
CD44-226ENST00000527889 SCG3Q8WXD2 468 aaKnown RBP5.41□□□□□ -1.54
CD44-226ENST00000527889 KCTD15Q96SI1 283 aaPredicted RBP5.41□□□□□ -1.54
CD44-226ENST00000527889 QTRT2Q9H974 415 aaKnown RBP5.41□□□□□ -1.54
CD44-226ENST00000527889 AAASQ9NRG9 546 aa5.41□□□□□ -1.54
CD44-226ENST00000527889 DACH1Q9UI36 760 aa5.41□□□□□ -1.54
CD44-226ENST00000527889 NUDCQ9Y266 331 aa5.41□□□□□ -1.54
CD44-226ENST00000527889 MAP3K19Q56UN5 1328 aa5.41□□□□□ -1.54
CD44-226ENST00000527889 SBNO1A3KN83 1393 aa5.41□□□□□ -1.54
CD44-226ENST00000527889 TNS2Q63HR2 1409 aa5.4□□□□□ -1.54
CD44-226ENST00000527889 PARP4Q9UKK3 1724 aaKnown RBP5.4□□□□□ -1.54
CD44-226ENST00000527889 NDUFB5O43674 189 aa5.4□□□□□ -1.54
CD44-226ENST00000527889 IGHA2P01877 340 aa5.4□□□□□ -1.54
CD44-226ENST00000527889 HMOX1P09601 288 aa5.4□□□□□ -1.54
CD44-226ENST00000527889 IL13P35225 146 aa5.4□□□□□ -1.54
CD44-226ENST00000527889 EPHA4P54764 986 aa5.4□□□□□ -1.54
CD44-226ENST00000527889 RAB15P59190 212 aa5.4□□□□□ -1.54
CD44-226ENST00000527889 NNTQ13423 1086 aa5.4□□□□□ -1.54
CD44-226ENST00000527889 DSC3Q14574 896 aa5.4□□□□□ -1.54
CD44-226ENST00000527889 HSP90AB2PQ58FF8 381 aa5.4□□□□□ -1.54
CD44-226ENST00000527889 CRIPAKQ8N1N5 446 aa5.4□□□□□ -1.54
CD44-226ENST00000527889 RUNDC1Q96C34 613 aa5.4□□□□□ -1.54
CD44-226ENST00000527889 KLF16Q9BXK1 252 aaPredicted RBP5.4□□□□□ -1.54
CD44-226ENST00000527889 SAP130Q9H0E3 1048 aa5.4□□□□□ -1.54
CD44-226ENST00000527889 MAP4K5Q9Y4K4 846 aa5.4□□□□□ -1.54
CD44-226ENST00000527889 SUPT16HQ9Y5B9 1047 aaKnown RBP5.4□□□□□ -1.54
CD44-226ENST00000527889 LRRC37A3O60309 1634 aa5.4□□□□□ -1.55
CD44-226ENST00000527889 FLT4P35916 1363 aa5.4□□□□□ -1.55
CD44-226ENST00000527889 PKD1L3Q7Z443 1732 aa5.4□□□□□ -1.55
CD44-226ENST00000527889 TNS3Q68CZ2 1445 aa5.4□□□□□ -1.55
CD44-226ENST00000527889 KDM3BQ7LBC6 1761 aa5.39□□□□□ -1.55
CD44-226ENST00000527889 COL16A1Q07092 1604 aaPredicted RBP5.39□□□□□ -1.55
CD44-226ENST00000527889 AHDC1Q5TGY3 1603 aaPredicted RBP5.39□□□□□ -1.55
CD44-226ENST00000527889 COL22A1Q8NFW1 1626 aaPredicted RBP5.39□□□□□ -1.55
CD44-226ENST00000527889 ERVH48-1M5A8F1 160 aa5.39□□□□□ -1.55
CD44-226ENST00000527889 STAU1O95793 577 aaKnown RBP5.39□□□□□ -1.55
CD44-226ENST00000527889 FSHRP23945 695 aa5.39□□□□□ -1.55
CD44-226ENST00000527889 AMPHP49418 695 aa5.39□□□□□ -1.55
CD44-226ENST00000527889 GDF10P55107 478 aa5.39□□□□□ -1.55
CD44-226ENST00000527889 ERVK-9P63128 1117 aa5.39□□□□□ -1.55
CD44-226ENST00000527889 IRX6P78412 446 aaPredicted RBP5.39□□□□□ -1.55
CD44-226ENST00000527889 RAD51AP2Q09MP3 1159 aa5.39□□□□□ -1.55
CD44-226ENST00000527889 EIF4A2Q14240 407 aaKnown RBP5.39□□□□□ -1.55
CD44-226ENST00000527889 SF3A1Q15459 793 aaKnown RBP5.39□□□□□ -1.55
CD44-226ENST00000527889 INTS6LQ5JSJ4 861 aaKnown RBP5.39□□□□□ -1.55
CD44-226ENST00000527889 C9orf131Q5VYM1 1079 aa5.39□□□□□ -1.55
CD44-226ENST00000527889 C16orf46Q6P387 395 aa5.39□□□□□ -1.55
CD44-226ENST00000527889 DHX37Q8IY37 1157 aaKnown RBP5.39□□□□□ -1.55
CD44-226ENST00000527889 TCP11L2Q8N4U5 519 aa5.39□□□□□ -1.55
CD44-226ENST00000527889 UBXN4Q92575 508 aa5.39□□□□□ -1.55
CD44-226ENST00000527889 PKNOX2Q96KN3 472 aa5.39□□□□□ -1.55
CD44-226ENST00000527889 CITED4Q96RK1 184 aa5.39□□□□□ -1.55
CD44-226ENST00000527889 TSPAN10Q9H1Z9 355 aaPredicted RBP5.39□□□□□ -1.55
CD44-226ENST00000527889 BRPF3Q9ULD4 1205 aa5.39□□□□□ -1.55
CD44-226ENST00000527889 WWC3Q9ULE0 1092 aa5.39□□□□□ -1.55
CD44-226ENST00000527889 WASF2Q9Y6W5 498 aa5.39□□□□□ -1.55
CD44-226ENST00000527889 ZNF521Q96K83 1311 aa5.39□□□□□ -1.55
CD44-226ENST00000527889 N4BP2Q86UW6 1770 aaPredicted RBP5.38□□□□□ -1.55
CD44-226ENST00000527889 A0A1W2PRU2 124 aa5.38□□□□□ -1.55
CD44-226ENST00000527889 BACH1O14867 736 aa5.38□□□□□ -1.55
CD44-226ENST00000527889 FZD6O60353 706 aa5.38□□□□□ -1.55
CD44-226ENST00000527889 TIMP2P16035 220 aa5.38□□□□□ -1.55
CD44-226ENST00000527889 HOXC9P31274 260 aa5.38□□□□□ -1.55
CD44-226ENST00000527889 PRKAR2BP31323 418 aa5.38□□□□□ -1.55
CD44-226ENST00000527889 EIF1AXP47813 144 aaKnown RBP5.38□□□□□ -1.55
CD44-226ENST00000527889 SMCPP49901 116 aaPredicted RBP5.38□□□□□ -1.55
CD44-226ENST00000527889 PDE3BQ13370 1112 aa5.38□□□□□ -1.55
CD44-226ENST00000527889 R3HDM1Q15032 1099 aaKnown RBP5.38□□□□□ -1.55
CD44-226ENST00000527889 CC2D2BQ6DHV5 1058 aa5.38□□□□□ -1.55
CD44-226ENST00000527889 BRINP3Q76B58 766 aa5.38□□□□□ -1.55
CD44-226ENST00000527889 VASH1Q7L8A9 365 aaPredicted RBP5.38□□□□□ -1.55
CD44-226ENST00000527889 PIK3R5Q8WYR1 880 aa5.38□□□□□ -1.55
CD44-226ENST00000527889 LTV1Q96GA3 475 aaPredicted RBP5.38□□□□□ -1.55
CD44-226ENST00000527889 PLEKHF1Q96S99 279 aa5.38□□□□□ -1.55
CD44-226ENST00000527889 OSBPL3Q9H4L5 887 aa5.38□□□□□ -1.55
CD44-226ENST00000527889 CCDC87Q9NVE4 849 aa5.38□□□□□ -1.55
CD44-226ENST00000527889 PARP2Q9UGN5 583 aa5.38□□□□□ -1.55
CD44-226ENST00000527889 USP19O94966 1318 aa5.38□□□□□ -1.55
CD44-226ENST00000527889 SPATA31A6Q5VVP1 1343 aa5.38□□□□□ -1.55
CD44-226ENST00000527889 NPHP3Q7Z494 1330 aa5.38□□□□□ -1.55
CD44-226ENST00000527889 MAPK8IP3Q9UPT6 1336 aa5.38□□□□□ -1.55
CD44-226ENST00000527889 NRAPQ86VF7 1730 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms