RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 MED23Q9ULK4 1368 aa13.96□□□□□ -0.17
NEDD8-204ENST00000526430 MGAMO43451 1857 aa13.96□□□□□ -0.17
NEDD8-204ENST00000526430 SOX1O00570 391 aaPredicted RBP13.96□□□□□ -0.17
NEDD8-204ENST00000526430 PPP1R12BO60237 982 aaPredicted RBP13.96□□□□□ -0.17
NEDD8-204ENST00000526430 SASH1O94885 1247 aa13.96□□□□□ -0.17
NEDD8-204ENST00000526430 TWISTNBQ3B726 338 aaPredicted RBP13.96□□□□□ -0.17
NEDD8-204ENST00000526430 ZBED3Q96IU2 234 aaPredicted RBP13.96□□□□□ -0.17
NEDD8-204ENST00000526430 ISCA1Q9BUE6 129 aa13.96□□□□□ -0.17
NEDD8-204ENST00000526430 PPP2R3BQ9Y5P8 575 aa13.96□□□□□ -0.17
NEDD8-204ENST00000526430 WTIPA6NIX2 430 aaPredicted RBP13.95□□□□□ -0.18
NEDD8-204ENST00000526430 AIMP1Q12904 312 aaKnown RBP13.95□□□□□ -0.18
NEDD8-204ENST00000526430 STRIP1Q5VSL9 837 aa13.95□□□□□ -0.18
NEDD8-204ENST00000526430 NKX2-3Q8TAU0 364 aa13.95□□□□□ -0.18
NEDD8-204ENST00000526430 DEFB129Q9H1M3 183 aa13.95□□□□□ -0.18
NEDD8-204ENST00000526430 FZD1Q9UP38 647 aa13.95□□□□□ -0.18
NEDD8-204ENST00000526430 IRS4O14654 1257 aaPredicted RBP13.94□□□□□ -0.18
NEDD8-204ENST00000526430 ZBTB7BO15156 539 aaPredicted RBP13.94□□□□□ -0.18
NEDD8-204ENST00000526430 GNRH1P01148 92 aa13.94□□□□□ -0.18
NEDD8-204ENST00000526430 ATP2B4P23634 1241 aa13.94□□□□□ -0.18
NEDD8-204ENST00000526430 GJA5P36382 358 aa13.94□□□□□ -0.18
NEDD8-204ENST00000526430 PRMT2P55345 433 aa13.94□□□□□ -0.18
NEDD8-204ENST00000526430 ANKRD13DQ6ZTN6 518 aa13.94□□□□□ -0.18
NEDD8-204ENST00000526430 PLBD2Q8NHP8 589 aa13.94□□□□□ -0.18
NEDD8-204ENST00000526430 SH3TC2Q8TF17 1288 aa13.94□□□□□ -0.18
NEDD8-204ENST00000526430 LRCH3Q96II8 777 aa13.94□□□□□ -0.18
NEDD8-204ENST00000526430 COL25A1Q9BXS0 654 aaPredicted RBP13.94□□□□□ -0.18
NEDD8-204ENST00000526430 CHPF2Q9P2E5 772 aa13.94□□□□□ -0.18
NEDD8-204ENST00000526430 ARAP2Q8WZ64 1704 aa13.93□□□□□ -0.18
NEDD8-204ENST00000526430 HSP90B1P14625 803 aaKnown RBP13.93□□□□□ -0.18
NEDD8-204ENST00000526430 TRIM28Q13263 835 aaKnown RBP13.93□□□□□ -0.18
NEDD8-204ENST00000526430 HDGFL1Q5TGJ6 251 aa13.93□□□□□ -0.18
NEDD8-204ENST00000526430 G2E3Q7L622 706 aa13.93□□□□□ -0.18
NEDD8-204ENST00000526430 YTHDC1Q96MU7 727 aaKnown RBP13.93□□□□□ -0.18
NEDD8-204ENST00000526430 PHAXQ9H814 394 aaKnown RBP13.93□□□□□ -0.18
NEDD8-204ENST00000526430 SEC31BQ9NQW1 1179 aa13.93□□□□□ -0.18
NEDD8-204ENST00000526430 STXBP5LQ9Y2K9 1186 aa13.93□□□□□ -0.18
NEDD8-204ENST00000526430 VCANP13611 3396 aa13.92□□□□□ -0.18
NEDD8-204ENST00000526430 MYCP01106 439 aaPredicted RBP13.92□□□□□ -0.18
NEDD8-204ENST00000526430 IREB2P48200 963 aaKnown RBP13.92□□□□□ -0.18
NEDD8-204ENST00000526430 SUPT20HL1Q3ZLR7 823 aa13.92□□□□□ -0.18
NEDD8-204ENST00000526430 ANKRD13AQ8IZ07 590 aa13.92□□□□□ -0.18
NEDD8-204ENST00000526430 MS4A4AQ96JQ5 239 aa13.92□□□□□ -0.18
NEDD8-204ENST00000526430 MXD3Q9BW11 206 aa13.92□□□□□ -0.18
NEDD8-204ENST00000526430 ZFYVE28Q9HCC9 887 aa13.92□□□□□ -0.18
NEDD8-204ENST00000526430 ZNF804BA4D1E1 1349 aa13.91□□□□□ -0.18
NEDD8-204ENST00000526430 GJA8P48165 433 aa13.91□□□□□ -0.18
NEDD8-204ENST00000526430 TAF1CQ15572 869 aaPredicted RBP13.91□□□□□ -0.18
NEDD8-204ENST00000526430 ZNF428Q96B54 188 aa13.91□□□□□ -0.18
NEDD8-204ENST00000526430 DBF4Q9UBU7 674 aaPredicted RBP13.91□□□□□ -0.18
NEDD8-204ENST00000526430 GJB1P08034 283 aa13.9□□□□□ -0.18
NEDD8-204ENST00000526430 CCDC152Q4G0S7 254 aa13.9□□□□□ -0.18
NEDD8-204ENST00000526430 CCDC30Q5VVM6 783 aa13.9□□□□□ -0.18
NEDD8-204ENST00000526430 MRPL50Q8N5N7 158 aaKnown RBP13.9□□□□□ -0.18
NEDD8-204ENST00000526430 MTMR14Q8NCE2 650 aa13.9□□□□□ -0.18
NEDD8-204ENST00000526430 COA1Q9GZY4 146 aa13.9□□□□□ -0.18
NEDD8-204ENST00000526430 A0A1B0GUL6 1792 aa13.89□□□□□ -0.19
NEDD8-204ENST00000526430 ATP5J2-PTCD1G3V325 749 aa13.89□□□□□ -0.19
NEDD8-204ENST00000526430 USP2O75604 605 aaPredicted RBP13.89□□□□□ -0.19
NEDD8-204ENST00000526430 SLC4A2P04920 1241 aa13.89□□□□□ -0.19
NEDD8-204ENST00000526430 LACTBP83111 547 aaPredicted RBP13.89□□□□□ -0.19
NEDD8-204ENST00000526430 KIF22Q14807 665 aa13.89□□□□□ -0.19
NEDD8-204ENST00000526430 MTFR1Q15390 333 aa13.89□□□□□ -0.19
NEDD8-204ENST00000526430 RTL5Q5HYW3 569 aaPredicted RBP13.89□□□□□ -0.19
NEDD8-204ENST00000526430 ZBTB38Q8NAP3 1195 aaPredicted RBP13.89□□□□□ -0.19
NEDD8-204ENST00000526430 BRI3BPQ8WY22 251 aa13.89□□□□□ -0.19
NEDD8-204ENST00000526430 SSH1Q8WYL5 1049 aa13.89□□□□□ -0.19
NEDD8-204ENST00000526430 TLR2O60603 784 aa13.88□□□□□ -0.19
NEDD8-204ENST00000526430 RARSP54136 660 aaKnown RBP13.88□□□□□ -0.19
NEDD8-204ENST00000526430 KIAA0825Q8IV33 1275 aa13.88□□□□□ -0.19
NEDD8-204ENST00000526430 ANKRD18AQ8IVF6 992 aa13.88□□□□□ -0.19
NEDD8-204ENST00000526430 DEFB123Q8N688 67 aa13.88□□□□□ -0.19
NEDD8-204ENST00000526430 OPTNQ96CV9 577 aa13.88□□□□□ -0.19
NEDD8-204ENST00000526430 ZCCHC17Q9NP64 241 aaKnown RBP13.88□□□□□ -0.19
NEDD8-204ENST00000526430 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.88□□□□□ -0.19
NEDD8-204ENST00000526430 SPTBN5Q9NRC6 3674 aaKnown RBP13.88□□□□□ -0.19
NEDD8-204ENST00000526430 CACNA1FO60840 1977 aa13.87□□□□□ -0.19
NEDD8-204ENST00000526430 WDHD1O75717 1129 aaPredicted RBP13.87□□□□□ -0.19
NEDD8-204ENST00000526430 CT47B1P0C2W7 299 aaPredicted RBP13.87□□□□□ -0.19
NEDD8-204ENST00000526430 BMP8BP34820 402 aa13.87□□□□□ -0.19
NEDD8-204ENST00000526430 DLGAP5Q15398 846 aa13.87□□□□□ -0.19
NEDD8-204ENST00000526430 TTLL5Q6EMB2 1281 aa13.87□□□□□ -0.19
NEDD8-204ENST00000526430 FBXW7Q969H0 707 aa13.87□□□□□ -0.19
NEDD8-204ENST00000526430 ARHGAP39Q9C0H5 1083 aa13.87□□□□□ -0.19
NEDD8-204ENST00000526430 HYPKQ9NX55 129 aa13.87□□□□□ -0.19
NEDD8-204ENST00000526430 CCL15-CCL14A0A0B4J2E2 113 aa13.86□□□□□ -0.19
NEDD8-204ENST00000526430 PDE8AO60658 829 aa13.86□□□□□ -0.19
NEDD8-204ENST00000526430 CAPN2P17655 700 aa13.86□□□□□ -0.19
NEDD8-204ENST00000526430 GTF2A2P52657 109 aa13.86□□□□□ -0.19
NEDD8-204ENST00000526430 CCL15Q16663 113 aa13.86□□□□□ -0.19
NEDD8-204ENST00000526430 NBPF12Q5TAG4 269 aaPredicted RBP13.86□□□□□ -0.19
NEDD8-204ENST00000526430 MTMR10Q9NXD2 777 aa13.86□□□□□ -0.19
NEDD8-204ENST00000526430 MYO1BO43795 1136 aa13.85□□□□□ -0.19
NEDD8-204ENST00000526430 EVI5O60447 810 aa13.85□□□□□ -0.19
NEDD8-204ENST00000526430 BCAR3O75815 825 aa13.85□□□□□ -0.19
NEDD8-204ENST00000526430 FARP2O94887 1054 aaPredicted RBP13.85□□□□□ -0.19
NEDD8-204ENST00000526430 CCT4P50991 539 aaKnown RBP13.85□□□□□ -0.19
NEDD8-204ENST00000526430 LRIT3Q3SXY7 679 aa13.85□□□□□ -0.19
NEDD8-204ENST00000526430 ALDH1L2Q3SY69 923 aa13.85□□□□□ -0.19
NEDD8-204ENST00000526430 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.85□□□□□ -0.19
NEDD8-204ENST00000526430 FAM43AQ8N2R8 423 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms