RNA–Protein interactions for RNA: ENST00000526430.1

NEDD8-204, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 3

Gene NEDD8, Length 286 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-204ENST00000526430 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.4□□□□□ -0.741e-17■□□□□ 9.3
NEDD8-204ENST00000526430 AKAP1Q92667 903 aaKnown RBP eCLIP9.62□□□□□ -0.871e-17■□□□□ 10.9
NEDD8-204ENST00000526430 ZNF622Q969S3 477 aaKnown RBP eCLIP14.78□□□□□ -0.041e-16■□□□□ 9.9
NEDD8-204ENST00000526430 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.67□□□□□ -0.387e-16■■■□□ 19.1
NEDD8-204ENST00000526430 RPS3P23396 243 aaKnown RBP eCLIP10.61□□□□□ -0.712e-15■■■□□ 16.4
NEDD8-204ENST00000526430 SF3B4Q15427 424 aaKnown RBP eCLIP9.79□□□□□ -0.843e-15■■■■□ 24.1
NEDD8-204ENST00000526430 LARP4Q71RC2 724 aaKnown RBP eCLIP10.14□□□□□ -0.793e-13■■■■■ 29.6
NEDD8-204ENST00000526430 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.8□□□□□ -0.26e-11■■□□□ 13.6
NEDD8-204ENST00000526430 DDX3XO00571 662 aaKnown RBP eCLIP11.36□□□□□ -0.592e-10■■□□□ 12.1
NEDD8-204ENST00000526430 PCBP2Q15366 365 aaKnown RBP eCLIP10.36□□□□□ -0.759e-10■□□□□ 8.1
NEDD8-204ENST00000526430 PUM1Q14671 1186 aaKnown RBP eCLIP12.57□□□□□ -0.42e-9■■□□□ 12.1
NEDD8-204ENST00000526430 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.37□□□□□ -0.593e-9■■□□□ 11.5
NEDD8-204ENST00000526430 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.22□□□□□ -0.295e-9■□□□□ 8.6
NEDD8-204ENST00000526430 PABPC4Q13310 644 aaKnown RBP eCLIP13.43□□□□□ -0.268e-9■■□□□ 13.3
NEDD8-204ENST00000526430 EFTUD2Q15029 972 aaKnown RBP eCLIP10.59□□□□□ -0.711e-8■■■□□ 18.3
NEDD8-204ENST00000526430 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.99□□□□□ -0.812e-8■■■■□ 21.7
NEDD8-204ENST00000526430 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP15.04■□□□□ -06e-8■■□□□ 11.8
NEDD8-204ENST00000526430 SUB1P53999 127 aaKnown RBP eCLIP8.24□□□□□ -1.098e-8■■■■□ 26.6
NEDD8-204ENST00000526430 AQRO60306 1485 aaKnown RBP eCLIP20.66■□□□□ 0.98e-8■■□□□ 11.9
NEDD8-204ENST00000526430 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17■□□□□ 0.311e-7■■■□□ 14.9
NEDD8-204ENST00000526430 PRPF4O43172 522 aaKnown RBP eCLIP10.32□□□□□ -0.761e-7■□□□□ 8.7
NEDD8-204ENST00000526430 EIF3GO75821 320 aaKnown RBP eCLIP8.01□□□□□ -1.131e-7■■■■□ 19.4
NEDD8-204ENST00000526430 ILF3Q12906 894 aaKnown RBP eCLIP10.64□□□□□ -0.713e-7■■□□□ 13.3
NEDD8-204ENST00000526430 UPF1Q92900 1129 aaKnown RBP eCLIP17.49■□□□□ 0.393e-7■□□□□ 10.1
NEDD8-204ENST00000526430 SF3B1O75533 1304 aaKnown RBP eCLIP11.9□□□□□ -0.54e-7■■■■■ 86.2
NEDD8-204ENST00000526430 KHSRPQ92945 711 aaKnown RBP eCLIP13.14□□□□□ -0.314e-7■■□□□ 13.3
NEDD8-204ENST00000526430 SF3A3Q12874 501 aaKnown RBP eCLIP10.06□□□□□ -0.84e-7■■■□□ 16.8
NEDD8-204ENST00000526430 HNRNPKP61978 463 aaKnown RBP eCLIP11.01□□□□□ -0.655e-7■□□□□ 9.7
NEDD8-204ENST00000526430 FTOQ9C0B1 505 aaKnown RBP eCLIP12.83□□□□□ -0.367e-7■■□□□ 13.4
NEDD8-204ENST00000526430 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP12.02□□□□□ -0.491e-6■■■□□ 15.3
NEDD8-204ENST00000526430 U2AF2P26368 475 aaKnown RBP eCLIP12.33□□□□□ -0.441e-6■□□□□ 10.9
NEDD8-204ENST00000526430 DDX6P26196 483 aaKnown RBP eCLIP11.59□□□□□ -0.551e-6■■■□□ 15.5
NEDD8-204ENST00000526430 HNRNPCP07910 306 aaKnown RBP eCLIP8.07□□□□□ -1.122e-6■□□□□ 8.9
NEDD8-204ENST00000526430 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.2□□□□□ -0.622e-6■■■■■ 42.9
NEDD8-204ENST00000526430 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.56□□□□□ -0.723e-6■■■□□ 18.4
NEDD8-204ENST00000526430 PTBP1P26599 531 aaKnown RBP eCLIP8.65□□□□□ -1.027e-6■□□□□ 9.8
NEDD8-204ENST00000526430 RBM15Q96T37 977 aaKnown RBP eCLIP10.87□□□□□ -0.678e-6■□□□□ 8.4
Retrieved 37 of 37 RNA–protein pairs in 9.1 ms