RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 CA12O43570 354 aa22.53■■□□□ 1.2
SQSTM1-209ENST00000504627 FKBP1BP68106 108 aa22.53■■□□□ 1.2
SQSTM1-209ENST00000504627 PRAMEF18Q5VWM3 479 aa22.53■■□□□ 1.2
SQSTM1-209ENST00000504627 ANKRD44Q8N8A2 993 aa22.53■■□□□ 1.2
SQSTM1-209ENST00000504627 JAG2Q9Y219 1238 aa22.53■■□□□ 1.2
SQSTM1-209ENST00000504627 NF2P35240 595 aa22.52■■□□□ 1.2
SQSTM1-209ENST00000504627 DLGAP5Q15398 846 aa22.52■■□□□ 1.2
SQSTM1-209ENST00000504627 METTL24Q5JXM2 366 aa22.52■■□□□ 1.2
SQSTM1-209ENST00000504627 CERS5Q8N5B7 392 aa22.52■■□□□ 1.2
SQSTM1-209ENST00000504627 TSKSQ9UJT2 592 aa22.52■■□□□ 1.2
SQSTM1-209ENST00000504627 NOB1Q9ULX3 412 aaKnown RBP22.52■■□□□ 1.2
SQSTM1-209ENST00000504627 RIPOR2Q9Y4F9 1068 aa22.52■■□□□ 1.2
SQSTM1-209ENST00000504627 A0A1B0GUL6 1792 aa22.51■■□□□ 1.19
SQSTM1-209ENST00000504627 HIBADHP31937 336 aaKnown RBP22.51■■□□□ 1.19
SQSTM1-209ENST00000504627 GYG1P46976 350 aa22.51■■□□□ 1.19
SQSTM1-209ENST00000504627 RARSP54136 660 aaKnown RBP22.51■■□□□ 1.19
SQSTM1-209ENST00000504627 RRP1P56182 461 aaKnown RBP22.51■■□□□ 1.19
SQSTM1-209ENST00000504627 TTLL12Q14166 644 aaPredicted RBP22.51■■□□□ 1.19
SQSTM1-209ENST00000504627 VPS37DQ86XT2 251 aa22.51■■□□□ 1.19
SQSTM1-209ENST00000504627 APOBEC3FQ8IUX4 373 aaKnown RBP22.51■■□□□ 1.19
SQSTM1-209ENST00000504627 ZIC5Q96T25 663 aa22.51■■□□□ 1.19
SQSTM1-209ENST00000504627 ZNF646O15015 1829 aaPredicted RBP22.51■■□□□ 1.19
SQSTM1-209ENST00000504627 NEFLP07196 543 aa22.5■■□□□ 1.19
SQSTM1-209ENST00000504627 FKBP1AP62942 108 aaKnown RBP22.5■■□□□ 1.19
SQSTM1-209ENST00000504627 LRRC24Q50LG9 513 aa22.5■■□□□ 1.19
SQSTM1-209ENST00000504627 API5Q9BZZ5 524 aaKnown RBP22.5■■□□□ 1.19
SQSTM1-209ENST00000504627 FAM155AB1AL88 458 aaPredicted RBP22.49■■□□□ 1.19
SQSTM1-209ENST00000504627 KIF23Q02241 960 aaPredicted RBP22.49■■□□□ 1.19
SQSTM1-209ENST00000504627 KLHDC4Q8TBB5 520 aa22.49■■□□□ 1.19
SQSTM1-209ENST00000504627 FAM84BQ96KN1 310 aaPredicted RBP22.49■■□□□ 1.19
SQSTM1-209ENST00000504627 MYO1BO43795 1136 aa22.48■■□□□ 1.19
SQSTM1-209ENST00000504627 SLC10A3P09131 477 aa22.48■■□□□ 1.19
SQSTM1-209ENST00000504627 UBTFL1P0CB47 393 aaPredicted RBP22.48■■□□□ 1.19
SQSTM1-209ENST00000504627 RBM5P52756 815 aaKnown RBP eCLIP22.48■■□□□ 1.19
SQSTM1-209ENST00000504627 CFAP100Q494V2 611 aa22.48■■□□□ 1.19
SQSTM1-209ENST00000504627 CAVIN4Q5BKX8 364 aa22.48■■□□□ 1.19
SQSTM1-209ENST00000504627 MOB2Q70IA6 237 aa22.48■■□□□ 1.19
SQSTM1-209ENST00000504627 GOLGA6L2Q8N9W4 650 aaPredicted RBP22.48■■□□□ 1.19
SQSTM1-209ENST00000504627 TDRD7Q8NHU6 1098 aaKnown RBP22.48■■□□□ 1.19
SQSTM1-209ENST00000504627 FRAT2O75474 233 aaPredicted RBP22.47■■□□□ 1.19
SQSTM1-209ENST00000504627 MFSD14BQ5SR56 506 aa22.47■■□□□ 1.19
SQSTM1-209ENST00000504627 MTMR14Q8NCE2 650 aa22.47■■□□□ 1.19
SQSTM1-209ENST00000504627 ZBED3Q96IU2 234 aaPredicted RBP22.47■■□□□ 1.19
SQSTM1-209ENST00000504627 FAM205AQ6ZU69 1335 aa22.47■■□□□ 1.19
SQSTM1-209ENST00000504627 UBE2Q2LH0YL09 131 aa22.46■■□□□ 1.19
SQSTM1-209ENST00000504627 PDE8BO95263 885 aa22.46■■□□□ 1.19
SQSTM1-209ENST00000504627 PAPPA2Q9BXP8 1791 aa22.45■■□□□ 1.19
SQSTM1-209ENST00000504627 HDAC5Q9UQL6 1122 aa22.45■■□□□ 1.18
SQSTM1-209ENST00000504627 KIF16BQ96L93 1317 aa22.45■■□□□ 1.18
SQSTM1-209ENST00000504627 SPDYE2BA6NHP3 402 aa22.44■■□□□ 1.18
SQSTM1-209ENST00000504627 SPDYE6P0CI01 402 aa22.44■■□□□ 1.18
SQSTM1-209ENST00000504627 PRKG1Q13976 671 aa22.44■■□□□ 1.18
SQSTM1-209ENST00000504627 ARMC9Q7Z3E5 817 aa22.44■■□□□ 1.18
SQSTM1-209ENST00000504627 RASAL3Q86YV0 1011 aa22.44■■□□□ 1.18
SQSTM1-209ENST00000504627 DEFB129Q9H1M3 183 aa22.44■■□□□ 1.18
SQSTM1-209ENST00000504627 VEZTQ9HBM0 779 aa22.44■■□□□ 1.18
SQSTM1-209ENST00000504627 TTF2Q9UNY4 1162 aaKnown RBP22.44■■□□□ 1.18
SQSTM1-209ENST00000504627 IQSEC3Q9UPP2 1182 aaPredicted RBP22.44■■□□□ 1.18
SQSTM1-209ENST00000504627 PCDHAC2Q9Y5I4 1007 aa22.44■■□□□ 1.18
SQSTM1-209ENST00000504627 CLRN2A0PK11 232 aa22.43■■□□□ 1.18
SQSTM1-209ENST00000504627 BCAR3O75815 825 aa22.43■■□□□ 1.18
SQSTM1-209ENST00000504627 IFIT1P09914 478 aaKnown RBP22.43■■□□□ 1.18
SQSTM1-209ENST00000504627 CHAF1AQ13111 956 aaPredicted RBP22.43■■□□□ 1.18
SQSTM1-209ENST00000504627 FBXO33Q7Z6M2 555 aa22.43■■□□□ 1.18
SQSTM1-209ENST00000504627 VGLL2Q8N8G2 317 aa22.43■■□□□ 1.18
SQSTM1-209ENST00000504627 PRMT6Q96LA8 375 aaPredicted RBP22.43■■□□□ 1.18
SQSTM1-209ENST00000504627 EYA2O00167 538 aa22.42■■□□□ 1.18
SQSTM1-209ENST00000504627 PUM3Q15397 648 aaKnown RBP22.42■■□□□ 1.18
SQSTM1-209ENST00000504627 REM2Q8IYK8 340 aaPredicted RBP22.42■■□□□ 1.18
SQSTM1-209ENST00000504627 CSRNP1Q96S65 589 aa22.42■■□□□ 1.18
SQSTM1-209ENST00000504627 RFX5P48382 616 aaPredicted RBP22.41■■□□□ 1.18
SQSTM1-209ENST00000504627 PTPN12Q05209 780 aaKnown RBP22.41■■□□□ 1.18
SQSTM1-209ENST00000504627 SAGE1Q9NXZ1 904 aa22.41■■□□□ 1.18
SQSTM1-209ENST00000504627 SERPINA10Q9UK55 444 aa22.41■■□□□ 1.18
SQSTM1-209ENST00000504627 PPP2R3BQ9Y5P8 575 aa22.41■■□□□ 1.18
SQSTM1-209ENST00000504627 COL1A1P02452 1464 aaPredicted RBP22.41■■□□□ 1.18
SQSTM1-209ENST00000504627 TRPA1O75762 1119 aa22.4■■□□□ 1.18
SQSTM1-209ENST00000504627 BCAMP50895 628 aa22.4■■□□□ 1.18
SQSTM1-209ENST00000504627 TBC1D22AQ8WUA7 517 aa22.4■■□□□ 1.18
SQSTM1-209ENST00000504627 ARHGAP45Q92619 1136 aa22.4■■□□□ 1.18
SQSTM1-209ENST00000504627 SIL1Q9H173 461 aa22.4■■□□□ 1.18
SQSTM1-209ENST00000504627 RNF186Q9NXI6 227 aa22.4■■□□□ 1.18
SQSTM1-209ENST00000504627 ANGEL1Q9UNK9 670 aaKnown RBP22.4■■□□□ 1.18
SQSTM1-209ENST00000504627 LRRFIP2Q9Y608 721 aaKnown RBP22.4■■□□□ 1.18
SQSTM1-209ENST00000504627 IPO8O15397 1037 aaKnown RBP22.39■■□□□ 1.17
SQSTM1-209ENST00000504627 SLC5A1P13866 664 aa22.39■■□□□ 1.17
SQSTM1-209ENST00000504627 PPP1R12BO60237 982 aaPredicted RBP22.38■■□□□ 1.17
SQSTM1-209ENST00000504627 SUPT20HL1Q3ZLR7 823 aa22.38■■□□□ 1.17
SQSTM1-209ENST00000504627 LPIN2Q92539 896 aa22.38■■□□□ 1.17
SQSTM1-209ENST00000504627 FRAT1Q92837 279 aaPredicted RBP22.38■■□□□ 1.17
SQSTM1-209ENST00000504627 ABHD8Q96I13 439 aa22.38■■□□□ 1.17
SQSTM1-209ENST00000504627 FGFR2P21802 821 aa22.37■■□□□ 1.17
SQSTM1-209ENST00000504627 CRKP46108 304 aa22.37■■□□□ 1.17
SQSTM1-209ENST00000504627 TNFAIP1Q13829 316 aa22.37■■□□□ 1.17
SQSTM1-209ENST00000504627 MEIS3Q99687 375 aa22.37■■□□□ 1.17
SQSTM1-209ENST00000504627 TDRD3Q9H7E2 651 aaKnown RBP22.37■■□□□ 1.17
SQSTM1-209ENST00000504627 ZBTB4Q9P1Z0 1013 aaPredicted RBP22.37■■□□□ 1.17
SQSTM1-209ENST00000504627 CEP126Q9P2H0 1117 aa22.37■■□□□ 1.17
SQSTM1-209ENST00000504627 FBXO3Q9UK99 471 aa22.37■■□□□ 1.17
SQSTM1-209ENST00000504627 GNAI3P08754 354 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms