RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 MXD3Q9BW11 206 aa14.57□□□□□ -0.08
CUX1-210ENST00000497815 USP17L3A6NCW0 530 aa14.56□□□□□ -0.08
CUX1-210ENST00000497815 USP17L4A6NCW7 530 aa14.56□□□□□ -0.08
CUX1-210ENST00000497815 PSMD14O00487 310 aa14.56□□□□□ -0.08
CUX1-210ENST00000497815 UQCRFS1P1P0C7P4 283 aa14.56□□□□□ -0.08
CUX1-210ENST00000497815 RASGRF1Q13972 1273 aa14.56□□□□□ -0.08
CUX1-210ENST00000497815 TNIP1Q15025 636 aa14.56□□□□□ -0.08
CUX1-210ENST00000497815 TTLL5Q6EMB2 1281 aa14.56□□□□□ -0.08
CUX1-210ENST00000497815 PI16Q6UXB8 463 aa14.56□□□□□ -0.08
CUX1-210ENST00000497815 USP17L1Q7RTZ2 530 aa14.56□□□□□ -0.08
CUX1-210ENST00000497815 SNRKQ9NRH2 765 aa14.56□□□□□ -0.08
CUX1-210ENST00000497815 COL1A1P02452 1464 aaPredicted RBP14.56□□□□□ -0.08
CUX1-210ENST00000497815 DICER1Q9UPY3 1922 aaKnown RBP14.55□□□□□ -0.08
CUX1-210ENST00000497815 DDNO94850 711 aaPredicted RBP14.55□□□□□ -0.08
CUX1-210ENST00000497815 ARID4AP29374 1257 aaPredicted RBP14.55□□□□□ -0.08
CUX1-210ENST00000497815 MCAMP43121 646 aa14.55□□□□□ -0.08
CUX1-210ENST00000497815 DPY19L2Q6NUT2 758 aa14.55□□□□□ -0.08
CUX1-210ENST00000497815 GPATCH3Q96I76 525 aa14.55□□□□□ -0.08
CUX1-210ENST00000497815 ECHDC1Q9NTX5 307 aa14.55□□□□□ -0.08
CUX1-210ENST00000497815 HMG20BQ9P0W2 317 aa14.55□□□□□ -0.08
CUX1-210ENST00000497815 DENND2AQ9ULE3 1009 aa14.55□□□□□ -0.08
CUX1-210ENST00000497815 ZBTB12Q9Y330 459 aaPredicted RBP14.55□□□□□ -0.08
CUX1-210ENST00000497815 NDUFB9Q9Y6M9 179 aa14.55□□□□□ -0.08
CUX1-210ENST00000497815 SEMA3EO15041 775 aa14.54□□□□□ -0.08
CUX1-210ENST00000497815 MX1P20591 662 aa14.54□□□□□ -0.08
CUX1-210ENST00000497815 DACT2Q5SW24 774 aa14.54□□□□□ -0.08
CUX1-210ENST00000497815 STRIP1Q5VSL9 837 aa14.54□□□□□ -0.08
CUX1-210ENST00000497815 SPATA5Q8NB90 893 aa14.54□□□□□ -0.08
CUX1-210ENST00000497815 ZNF526Q8TF50 670 aaPredicted RBP14.54□□□□□ -0.08
CUX1-210ENST00000497815 GTF3C3Q9Y5Q9 886 aa14.54□□□□□ -0.08
CUX1-210ENST00000497815 ZC3H4Q9UPT8 1303 aaKnown RBP14.54□□□□□ -0.08
CUX1-210ENST00000497815 SCN9AQ15858 1988 aa14.53□□□□□ -0.08
CUX1-210ENST00000497815 FAM205AQ6ZU69 1335 aa14.53□□□□□ -0.08
CUX1-210ENST00000497815 F8W031 263 aaPredicted RBP14.53□□□□□ -0.08
CUX1-210ENST00000497815 VIL1P09327 827 aaKnown RBP14.53□□□□□ -0.08
CUX1-210ENST00000497815 PDE4AP27815 886 aa14.53□□□□□ -0.08
CUX1-210ENST00000497815 GMPSP49915 693 aaPredicted RBP14.53□□□□□ -0.08
CUX1-210ENST00000497815 MFSD14BQ5SR56 506 aa14.53□□□□□ -0.08
CUX1-210ENST00000497815 RSBN1LQ6PCB5 846 aaPredicted RBP14.53□□□□□ -0.08
CUX1-210ENST00000497815 SKAP1Q86WV1 359 aa14.53□□□□□ -0.08
CUX1-210ENST00000497815 GPC2Q8N158 579 aa14.53□□□□□ -0.08
CUX1-210ENST00000497815 DNAJC2Q99543 621 aaKnown RBP14.53□□□□□ -0.08
CUX1-210ENST00000497815 BOLA2Q9H3K6 86 aa14.53□□□□□ -0.08
CUX1-210ENST00000497815 SALL3Q9BXA9 1300 aa14.52□□□□□ -0.08
CUX1-210ENST00000497815 GLTPD2A6NH11 291 aa14.52□□□□□ -0.09
CUX1-210ENST00000497815 ATP5JP18859 108 aa14.52□□□□□ -0.09
CUX1-210ENST00000497815 ZAP70P43403 619 aa14.52□□□□□ -0.09
CUX1-210ENST00000497815 TBC1D9Q6ZT07 1266 aa14.52□□□□□ -0.09
CUX1-210ENST00000497815 CERS5Q8N5B7 392 aa14.52□□□□□ -0.09
CUX1-210ENST00000497815 ZNF512BQ96KM6 892 aaPredicted RBP14.52□□□□□ -0.09
CUX1-210ENST00000497815 ABCF2Q9UG63 623 aa14.52□□□□□ -0.09
CUX1-210ENST00000497815 CHD4Q14839 1912 aa14.52□□□□□ -0.09
CUX1-210ENST00000497815 TTC41PQ6P2S7 1318 aa14.51□□□□□ -0.09
CUX1-210ENST00000497815 PDE1AP54750 535 aa14.51□□□□□ -0.09
CUX1-210ENST00000497815 GRIK5Q16478 980 aa14.51□□□□□ -0.09
CUX1-210ENST00000497815 KIAA0825Q8IV33 1275 aa14.51□□□□□ -0.09
CUX1-210ENST00000497815 WDR66Q8TBY9 1149 aa14.51□□□□□ -0.09
CUX1-210ENST00000497815 MYO3BQ8WXR4 1341 aa14.5□□□□□ -0.09
CUX1-210ENST00000497815 SHTN1A0MZ66 631 aa14.5□□□□□ -0.09
CUX1-210ENST00000497815 GOLIM4O00461 696 aa14.5□□□□□ -0.09
CUX1-210ENST00000497815 ERC2O15083 957 aa14.5□□□□□ -0.09
CUX1-210ENST00000497815 MAP4K4O95819 1239 aaPredicted RBP14.5□□□□□ -0.09
CUX1-210ENST00000497815 YY1P25490 414 aa14.5□□□□□ -0.09
CUX1-210ENST00000497815 PLEKHM2Q8IWE5 1019 aa14.5□□□□□ -0.09
CUX1-210ENST00000497815 PI4K2BQ8TCG2 481 aa14.5□□□□□ -0.09
CUX1-210ENST00000497815 TBC1D22AQ8WUA7 517 aa14.5□□□□□ -0.09
CUX1-210ENST00000497815 EDC3Q96F86 508 aaKnown RBP14.5□□□□□ -0.09
CUX1-210ENST00000497815 ANTXR1Q9H6X2 564 aa14.5□□□□□ -0.09
CUX1-210ENST00000497815 STAP2Q9UGK3 403 aa14.5□□□□□ -0.09
CUX1-210ENST00000497815 MYH13Q9UKX3 1938 aa14.49□□□□□ -0.09
CUX1-210ENST00000497815 PDS5AQ29RF7 1337 aaKnown RBP14.49□□□□□ -0.09
CUX1-210ENST00000497815 GLRX3O76003 335 aaKnown RBP14.49□□□□□ -0.09
CUX1-210ENST00000497815 CYP2E1P05181 493 aaPredicted RBP14.49□□□□□ -0.09
CUX1-210ENST00000497815 RPS12P25398 132 aaKnown RBP14.49□□□□□ -0.09
CUX1-210ENST00000497815 PRDX5P30044 214 aa14.49□□□□□ -0.09
CUX1-210ENST00000497815 SCNN1DP51172 638 aa14.49□□□□□ -0.09
CUX1-210ENST00000497815 AGBL3Q8NEM8 1001 aa14.49□□□□□ -0.09
CUX1-210ENST00000497815 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.49□□□□□ -0.09
CUX1-210ENST00000497815 GMLQ99445 158 aa14.49□□□□□ -0.09
CUX1-210ENST00000497815 HAUS7Q99871 368 aa14.49□□□□□ -0.09
CUX1-210ENST00000497815 PIH1D3Q9NQM4 214 aaKnown RBP14.49□□□□□ -0.09
CUX1-210ENST00000497815 TTF2Q9UNY4 1162 aaKnown RBP14.49□□□□□ -0.09
CUX1-210ENST00000497815 ZNF646O15015 1829 aaPredicted RBP14.49□□□□□ -0.09
CUX1-210ENST00000497815 PSME4Q14997 1843 aa14.48□□□□□ -0.09
CUX1-210ENST00000497815 LDHBP07195 334 aaKnown RBP14.48□□□□□ -0.09
CUX1-210ENST00000497815 USP17L8P0C7I0 530 aa14.48□□□□□ -0.09
CUX1-210ENST00000497815 LMOD1P29536 600 aaPredicted RBP14.48□□□□□ -0.09
CUX1-210ENST00000497815 RGS3P49796 1198 aa14.48□□□□□ -0.09
CUX1-210ENST00000497815 FKBP1AP62942 108 aaKnown RBP14.48□□□□□ -0.09
CUX1-210ENST00000497815 MICALL2Q8IY33 904 aa14.48□□□□□ -0.09
CUX1-210ENST00000497815 ZGPATQ8N5A5 531 aaKnown RBP14.48□□□□□ -0.09
CUX1-210ENST00000497815 PAG1Q9NWQ8 432 aa14.48□□□□□ -0.09
CUX1-210ENST00000497815 GPRC5DQ9NZD1 345 aa14.48□□□□□ -0.09
CUX1-210ENST00000497815 RAI14Q9P0K7 980 aa14.48□□□□□ -0.09
CUX1-210ENST00000497815 LRP2BPQ9P2M1 347 aa14.48□□□□□ -0.09
CUX1-210ENST00000497815 CNOT7Q9UIV1 285 aaKnown RBP14.48□□□□□ -0.09
CUX1-210ENST00000497815 SALL1Q9NSC2 1324 aa14.47□□□□□ -0.09
CUX1-210ENST00000497815 ZBTB22O15209 634 aa14.47□□□□□ -0.09
CUX1-210ENST00000497815 IDH1O75874 414 aaKnown RBP14.47□□□□□ -0.09
CUX1-210ENST00000497815 EPS15P42566 896 aa14.47□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms