RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	BICC1	Q9H694	974 aa	Known RBP	13.82	□□□□□ -0.2
BRCA1-222	ENST00000493919	CTAGE5	O15320	804 aa		13.81	□□□□□ -0.2
BRCA1-222	ENST00000493919	COQ9	O75208	318 aa		13.81	□□□□□ -0.2
BRCA1-222	ENST00000493919	ERCC3	P19447	782 aa		13.81	□□□□□ -0.2
BRCA1-222	ENST00000493919	ITGA6	P23229	1130 aa		13.81	□□□□□ -0.2
BRCA1-222	ENST00000493919	MRE11	P49959	708 aa		13.81	□□□□□ -0.2
BRCA1-222	ENST00000493919	FOXO4	P98177	505 aa		13.81	□□□□□ -0.2
BRCA1-222	ENST00000493919	SOGA3	Q5TF21	947 aa		13.81	□□□□□ -0.2
BRCA1-222	ENST00000493919	DNAJC14	Q6Y2X3	702 aa	Predicted RBP	13.81	□□□□□ -0.2
BRCA1-222	ENST00000493919	CALR3	Q96L12	384 aa	Known RBP	13.81	□□□□□ -0.2
BRCA1-222	ENST00000493919	CDC5L	Q99459	802 aa	Known RBP	13.81	□□□□□ -0.2
BRCA1-222	ENST00000493919	ANAPC4	Q9UJX5	808 aa		13.81	□□□□□ -0.2
BRCA1-222	ENST00000493919	FER1L6	Q2WGJ9	1857 aa		13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	GOLGA6C	A6NDK9	693 aa		13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	GOLGA6B	A6NDN3	693 aa		13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	GOLGA6D	P0CG33	693 aa		13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	LIG1	P18858	919 aa		13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	GABPB1	Q06547	395 aa	Predicted RBP	13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	ANKRD18A	Q8IVF6	992 aa		13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	GOLGA6A	Q9NYA3	693 aa		13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	LRRC37A	A6NMS7	1700 aa		13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	RAD50	Q92878	1312 aa		13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	CHD4	Q14839	1912 aa		13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	NFKBIE	O00221	500 aa		13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	PPP1R12A	O14974	1030 aa	Predicted RBP	13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	CAPN2	P17655	700 aa		13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	ZC3H12A	Q5D1E8	599 aa	Known RBP	13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	POTED	Q86YR6	584 aa		13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	C7orf43	Q8WVR3	580 aa		13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	KAZALD1	Q96I82	304 aa		13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	TAOK3	Q9H2K8	898 aa		13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	LRRFIP2	Q9Y608	721 aa	Known RBP	13.8	□□□□□ -0.2
BRCA1-222	ENST00000493919	RTL9	Q8NET4	1388 aa		13.79	□□□□□ -0.2
BRCA1-222	ENST00000493919	BBOX1	O75936	387 aa		13.79	□□□□□ -0.2
BRCA1-222	ENST00000493919	CSF1R	P07333	972 aa		13.79	□□□□□ -0.2
BRCA1-222	ENST00000493919	MS4A1	P11836	297 aa		13.79	□□□□□ -0.2
BRCA1-222	ENST00000493919	RPS8	P62241	208 aa	Known RBP	13.79	□□□□□ -0.2
BRCA1-222	ENST00000493919	ATP6V0A2	Q9Y487	856 aa		13.79	□□□□□ -0.2
BRCA1-222	ENST00000493919	ANKRD18B	A2A2Z9	1011 aa		13.78	□□□□□ -0.2
BRCA1-222	ENST00000493919	GNAI3	P08754	354 aa		13.78	□□□□□ -0.2
BRCA1-222	ENST00000493919	IGHMBP2	P38935	993 aa	Known RBP	13.78	□□□□□ -0.2
BRCA1-222	ENST00000493919	IFIT5	Q13325	482 aa	Known RBP	13.78	□□□□□ -0.2
BRCA1-222	ENST00000493919	CCDC57	Q2TAC2	916 aa		13.78	□□□□□ -0.2
BRCA1-222	ENST00000493919	C1orf115	Q9H7X2	142 aa		13.78	□□□□□ -0.2
BRCA1-222	ENST00000493919	TNNT3	P45378	269 aa	Predicted RBP	13.78	□□□□□ -0.2
BRCA1-222	ENST00000493919	SWT1	Q5T5J6	900 aa	Known RBP	13.78	□□□□□ -0.2
BRCA1-222	ENST00000493919	C20orf194	Q5TEA3	1177 aa		13.78	□□□□□ -0.2
BRCA1-222	ENST00000493919	ZNF771	Q7L3S4	317 aa	Predicted RBP	13.78	□□□□□ -0.2
BRCA1-222	ENST00000493919	TMC4	Q7Z404	712 aa		13.78	□□□□□ -0.2
BRCA1-222	ENST00000493919	RTKN2	Q8IZC4	609 aa		13.78	□□□□□ -0.2
BRCA1-222	ENST00000493919	ANKRD44	Q8N8A2	993 aa		13.78	□□□□□ -0.2
BRCA1-222	ENST00000493919	MTA3	Q9BTC8	594 aa		13.78	□□□□□ -0.2
BRCA1-222	ENST00000493919	COG6	Q9Y2V7	657 aa		13.78	□□□□□ -0.2
BRCA1-222	ENST00000493919	RRP1	P56182	461 aa	Known RBP	13.77	□□□□□ -0.21
BRCA1-222	ENST00000493919	MPHOSPH8	Q99549	860 aa		13.77	□□□□□ -0.21
BRCA1-222	ENST00000493919	RNF181	Q9P0P0	153 aa		13.77	□□□□□ -0.21
BRCA1-222	ENST00000493919	SNED1	Q8TER0	1413 aa		13.77	□□□□□ -0.21
BRCA1-222	ENST00000493919	TIAM2	Q8IVF5	1701 aa		13.77	□□□□□ -0.21
BRCA1-222	ENST00000493919	CCDC88A	Q3V6T2	1871 aa		13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	UQCRHL	A0A096LP55	91 aa		13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	UQCRH	P07919	91 aa		13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	RABL6	Q3YEC7	729 aa	Predicted RBP	13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	DPP8	Q6V1X1	898 aa	Predicted RBP	13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	SP8	Q8IXZ3	490 aa		13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	CCDC97	Q96F63	343 aa	Predicted RBP	13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	ZNF594	Q96JF6	807 aa	Predicted RBP	13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	SUDS3	Q9H7L9	328 aa	Predicted RBP	13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	ZNF277	Q9NRM2	450 aa	Predicted RBP	13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	NSFL1C	Q9UNZ2	370 aa	Known RBP	13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	SMC3	Q9UQE7	1217 aa		13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	IPO7	O95373	1038 aa	Known RBP	13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	GNAI2	P04899	355 aa		13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	MVP	Q14764	893 aa	Known RBP	13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	NOL8	Q76FK4	1167 aa	Known RBP	13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	CREBRF	Q8IUR6	639 aa		13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	JMY	Q8N9B5	988 aa		13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	ANKIB1	Q9P2G1	1089 aa		13.76	□□□□□ -0.21
BRCA1-222	ENST00000493919	SBF1	O95248	1867 aa		13.75	□□□□□ -0.21
BRCA1-222	ENST00000493919	BRD1	O95696	1058 aa		13.75	□□□□□ -0.21
BRCA1-222	ENST00000493919	LMNB1	P20700	586 aa		13.75	□□□□□ -0.21
BRCA1-222	ENST00000493919	GUCY2C	P25092	1073 aa		13.75	□□□□□ -0.21
BRCA1-222	ENST00000493919	CSPP1	Q1MSJ5	1256 aa		13.75	□□□□□ -0.21
BRCA1-222	ENST00000493919	C9orf131	Q5VYM1	1079 aa		13.75	□□□□□ -0.21
BRCA1-222	ENST00000493919	DUOX1	Q9NRD9	1551 aa		13.75	□□□□□ -0.21
BRCA1-222	ENST00000493919	PRELP	P51888	382 aa		13.74	□□□□□ -0.21
BRCA1-222	ENST00000493919	LRCH2	Q5VUJ6	765 aa		13.74	□□□□□ -0.21
BRCA1-222	ENST00000493919	B4GALNT3	Q6L9W6	998 aa		13.74	□□□□□ -0.21
BRCA1-222	ENST00000493919	ZBTB9	Q96C00	473 aa		13.74	□□□□□ -0.21
BRCA1-222	ENST00000493919	CNNM1	Q9NRU3	951 aa		13.74	□□□□□ -0.21
BRCA1-222	ENST00000493919	LTBP3	Q9NS15	1303 aa		13.74	□□□□□ -0.21
BRCA1-222	ENST00000493919	DHX16	O60231	1041 aa	Known RBP	13.74	□□□□□ -0.21
BRCA1-222	ENST00000493919	FRAT2	O75474	233 aa	Predicted RBP	13.74	□□□□□ -0.21
BRCA1-222	ENST00000493919	NOP2	P46087	812 aa	Known RBP	13.74	□□□□□ -0.21
BRCA1-222	ENST00000493919	GPSM2	P81274	684 aa		13.74	□□□□□ -0.21
BRCA1-222	ENST00000493919	TRDN	Q13061	729 aa		13.74	□□□□□ -0.21
BRCA1-222	ENST00000493919	PDE3A	Q14432	1141 aa		13.74	□□□□□ -0.21
BRCA1-222	ENST00000493919	LTBP1	Q14766	1721 aa		13.74	□□□□□ -0.21
BRCA1-222	ENST00000493919	C11orf91	Q3C1V1	193 aa		13.74	□□□□□ -0.21
BRCA1-222	ENST00000493919	ICE2	Q659A1	982 aa		13.74	□□□□□ -0.21

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