RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 IRS2Q9Y4H2 1338 aa21.05■□□□□ 0.96
LIME1-208ENST00000493265 KIAA2012Q0VF49 1180 aa21.05■□□□□ 0.96
LIME1-208ENST00000493265 CCDC102BQ68D86 513 aa21.05■□□□□ 0.96
LIME1-208ENST00000493265 ZNF541Q9H0D2 1346 aa21.04■□□□□ 0.96
LIME1-208ENST00000493265 IQCA1LA6NCM1 817 aa21.04■□□□□ 0.96
LIME1-208ENST00000493265 FRAT2O75474 233 aaPredicted RBP21.04■□□□□ 0.96
LIME1-208ENST00000493265 PDE4AP27815 886 aa21.04■□□□□ 0.96
LIME1-208ENST00000493265 CCDC158Q5M9N0 1113 aa21.04■□□□□ 0.96
LIME1-208ENST00000493265 C15orf52Q6ZUT6 534 aaKnown RBP21.04■□□□□ 0.96
LIME1-208ENST00000493265 FBXO33Q7Z6M2 555 aa21.03■□□□□ 0.96
LIME1-208ENST00000493265 FBXW7Q969H0 707 aa21.03■□□□□ 0.96
LIME1-208ENST00000493265 GPATCH3Q96I76 525 aa21.03■□□□□ 0.96
LIME1-208ENST00000493265 L3MBTL3Q96JM7 780 aaPredicted RBP21.03■□□□□ 0.96
LIME1-208ENST00000493265 TAF1DQ9H5J8 278 aaPredicted RBP21.03■□□□□ 0.96
LIME1-208ENST00000493265 ECE2O60344 883 aa21.02■□□□□ 0.96
LIME1-208ENST00000493265 MX1P20591 662 aa21.02■□□□□ 0.96
LIME1-208ENST00000493265 EAPPQ56P03 285 aaPredicted RBP21.02■□□□□ 0.96
LIME1-208ENST00000493265 LDHDQ86WU2 507 aa21.02■□□□□ 0.96
LIME1-208ENST00000493265 NIM1KQ8IY84 436 aa21.02■□□□□ 0.96
LIME1-208ENST00000493265 JDP2Q8WYK2 163 aa21.02■□□□□ 0.96
LIME1-208ENST00000493265 COA1Q9GZY4 146 aa21.02■□□□□ 0.96
LIME1-208ENST00000493265 CD209Q9NNX6 404 aa21.02■□□□□ 0.96
LIME1-208ENST00000493265 GNL3LQ9NVN8 582 aaKnown RBP21.02■□□□□ 0.96
LIME1-208ENST00000493265 JAG2Q9Y219 1238 aa21.02■□□□□ 0.96
LIME1-208ENST00000493265 RGS3P49796 1198 aa21.01■□□□□ 0.95
LIME1-208ENST00000493265 CHAF1AQ13111 956 aaPredicted RBP21.01■□□□□ 0.95
LIME1-208ENST00000493265 SNRKQ9NRH2 765 aa21.01■□□□□ 0.95
LIME1-208ENST00000493265 ECHDC1Q9NTX5 307 aa21.01■□□□□ 0.95
LIME1-208ENST00000493265 COL4A5P29400 1685 aa21.01■□□□□ 0.95
LIME1-208ENST00000493265 VPS33BQ9H267 617 aa21■□□□□ 0.95
LIME1-208ENST00000493265 PASKQ96RG2 1323 aa21■□□□□ 0.95
LIME1-208ENST00000493265 CNTNAP1P78357 1384 aa20.99■□□□□ 0.95
LIME1-208ENST00000493265 UQCRFS1P1P0C7P4 283 aa20.99■□□□□ 0.95
LIME1-208ENST00000493265 PDE1AP54750 535 aa20.99■□□□□ 0.95
LIME1-208ENST00000493265 SCARF1Q14162 830 aa20.99■□□□□ 0.95
LIME1-208ENST00000493265 PLEKHM2Q8IWE5 1019 aa20.99■□□□□ 0.95
LIME1-208ENST00000493265 KCNQ5Q9NR82 932 aa20.99■□□□□ 0.95
LIME1-208ENST00000493265 HACL1Q9UJ83 578 aa20.99■□□□□ 0.95
LIME1-208ENST00000493265 CLEC11AQ9Y240 323 aa20.99■□□□□ 0.95
LIME1-208ENST00000493265 NDUFB9Q9Y6M9 179 aa20.99■□□□□ 0.95
LIME1-208ENST00000493265 ADAMTSL1Q8N6G6 1762 aa20.99■□□□□ 0.95
LIME1-208ENST00000493265 PI16Q6UXB8 463 aa20.98■□□□□ 0.95
LIME1-208ENST00000493265 BOLA2Q9H3K6 86 aa20.98■□□□□ 0.95
LIME1-208ENST00000493265 SALL3Q9BXA9 1300 aa20.98■□□□□ 0.95
LIME1-208ENST00000493265 YDJCA8MPS7 323 aa20.97■□□□□ 0.95
LIME1-208ENST00000493265 RAD17O75943 681 aa20.97■□□□□ 0.95
LIME1-208ENST00000493265 MAP4K4O95819 1239 aaPredicted RBP20.97■□□□□ 0.95
LIME1-208ENST00000493265 IL1R1P14778 569 aa20.97■□□□□ 0.95
LIME1-208ENST00000493265 ARID4AP29374 1257 aaPredicted RBP20.97■□□□□ 0.95
LIME1-208ENST00000493265 MCAMP43121 646 aa20.97■□□□□ 0.95
LIME1-208ENST00000493265 GTF2IP78347 998 aa20.97■□□□□ 0.95
LIME1-208ENST00000493265 RASGRF1Q13972 1273 aa20.97■□□□□ 0.95
LIME1-208ENST00000493265 TDRD7Q8NHU6 1098 aaKnown RBP20.97■□□□□ 0.95
LIME1-208ENST00000493265 DNAJC2Q99543 621 aaKnown RBP20.97■□□□□ 0.95
LIME1-208ENST00000493265 ZNRF3Q9ULT6 936 aa20.97■□□□□ 0.95
LIME1-208ENST00000493265 ATP5JP18859 108 aa20.96■□□□□ 0.95
LIME1-208ENST00000493265 EPHX2P34913 555 aa20.96■□□□□ 0.95
LIME1-208ENST00000493265 PODNQ7Z5L7 613 aa20.96■□□□□ 0.95
LIME1-208ENST00000493265 HMG20BQ9P0W2 317 aa20.96■□□□□ 0.95
LIME1-208ENST00000493265 STAP2Q9UGK3 403 aa20.96■□□□□ 0.95
LIME1-208ENST00000493265 TTC41PQ6P2S7 1318 aa20.96■□□□□ 0.95
LIME1-208ENST00000493265 ERC2O15083 957 aa20.95■□□□□ 0.94
LIME1-208ENST00000493265 FOXN1O15353 648 aa20.95■□□□□ 0.94
LIME1-208ENST00000493265 ITGBL1O95965 494 aaPredicted RBP20.95■□□□□ 0.94
LIME1-208ENST00000493265 SPATA5Q8NB90 893 aa20.95■□□□□ 0.94
LIME1-208ENST00000493265 DENND2AQ9ULE3 1009 aa20.95■□□□□ 0.94
LIME1-208ENST00000493265 COL1A1P02452 1464 aaPredicted RBP20.94■□□□□ 0.94
LIME1-208ENST00000493265 MYH13Q9UKX3 1938 aa20.94■□□□□ 0.94
LIME1-208ENST00000493265 TMEM88BA6NKF7 163 aa20.94■□□□□ 0.94
LIME1-208ENST00000493265 FZD9O00144 591 aa20.94■□□□□ 0.94
LIME1-208ENST00000493265 ZAP70P43403 619 aa20.94■□□□□ 0.94
LIME1-208ENST00000493265 TTLL5Q6EMB2 1281 aa20.94■□□□□ 0.94
LIME1-208ENST00000493265 PI4K2BQ8TCG2 481 aa20.94■□□□□ 0.94
LIME1-208ENST00000493265 MXD3Q9BW11 206 aa20.94■□□□□ 0.94
LIME1-208ENST00000493265 SEMA3EO15041 775 aa20.93■□□□□ 0.94
LIME1-208ENST00000493265 GLRX3O76003 335 aaKnown RBP20.93■□□□□ 0.94
LIME1-208ENST00000493265 VEGFBP49765 207 aa20.93■□□□□ 0.94
LIME1-208ENST00000493265 EIF6P56537 245 aaKnown RBP20.93■□□□□ 0.94
LIME1-208ENST00000493265 MAP1SQ66K74 1059 aaPredicted RBP20.93■□□□□ 0.94
LIME1-208ENST00000493265 EDC3Q96F86 508 aaKnown RBP20.93■□□□□ 0.94
LIME1-208ENST00000493265 ZNF512BQ96KM6 892 aaPredicted RBP20.93■□□□□ 0.94
LIME1-208ENST00000493265 USP17L3A6NCW0 530 aa20.92■□□□□ 0.94
LIME1-208ENST00000493265 USP17L4A6NCW7 530 aa20.92■□□□□ 0.94
LIME1-208ENST00000493265 GOLIM4O00461 696 aa20.92■□□□□ 0.94
LIME1-208ENST00000493265 CXCL9Q07325 125 aa20.92■□□□□ 0.94
LIME1-208ENST00000493265 TBC1D9Q6ZT07 1266 aa20.92■□□□□ 0.94
LIME1-208ENST00000493265 USP17L1Q7RTZ2 530 aa20.92■□□□□ 0.94
LIME1-208ENST00000493265 GPC2Q8N158 579 aa20.92■□□□□ 0.94
LIME1-208ENST00000493265 GJA3Q9Y6H8 435 aa20.92■□□□□ 0.94
LIME1-208ENST00000493265 PSMD14O00487 310 aa20.91■□□□□ 0.94
LIME1-208ENST00000493265 AOX1Q06278 1338 aa20.91■□□□□ 0.94
LIME1-208ENST00000493265 SCN9AQ15858 1988 aa20.91■□□□□ 0.94
LIME1-208ENST00000493265 CIAPIN1Q6FI81 312 aa20.91■□□□□ 0.94
LIME1-208ENST00000493265 PNMA8AQ86V59 439 aaPredicted RBP20.91■□□□□ 0.94
LIME1-208ENST00000493265 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.91■□□□□ 0.94
LIME1-208ENST00000493265 HAUS7Q99871 368 aa20.91■□□□□ 0.94
LIME1-208ENST00000493265 OSBPL3Q9H4L5 887 aa20.91■□□□□ 0.94
LIME1-208ENST00000493265 ABCF2Q9UG63 623 aa20.91■□□□□ 0.94
LIME1-208ENST00000493265 FAM205AQ6ZU69 1335 aa20.9■□□□□ 0.94
LIME1-208ENST00000493265 TRIM6-TRIM34B2RNG4 842 aa20.9■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms