RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 ELL2O00472 640 aaPredicted RBP9.22□□□□□ -0.93
USP4-211ENST00000485450 PPEF1O14829 653 aaPredicted RBP9.22□□□□□ -0.93
USP4-211ENST00000485450 PTPN12Q05209 780 aaKnown RBP9.22□□□□□ -0.93
USP4-211ENST00000485450 PHIPQ8WWQ0 1821 aa9.22□□□□□ -0.93
USP4-211ENST00000485450 MROH5Q6ZUA9 1318 aa9.22□□□□□ -0.93
USP4-211ENST00000485450 SALL3Q9BXA9 1300 aa9.22□□□□□ -0.93
USP4-211ENST00000485450 SALL1Q9NSC2 1324 aa9.22□□□□□ -0.93
USP4-211ENST00000485450 F6X3S4 739 aa9.22□□□□□ -0.93
USP4-211ENST00000485450 KLHL40Q2TBA0 621 aa9.22□□□□□ -0.93
USP4-211ENST00000485450 TMEM57Q8N5G2 664 aa9.22□□□□□ -0.93
USP4-211ENST00000485450 CLUAP1Q96AJ1 413 aa9.22□□□□□ -0.93
USP4-211ENST00000485450 RFX7Q2KHR2 1363 aa9.22□□□□□ -0.93
USP4-211ENST00000485450 FAM89AQ96GI7 184 aa9.22□□□□□ -0.93
USP4-211ENST00000485450 IL1R1P14778 569 aa9.21□□□□□ -0.93
USP4-211ENST00000485450 NOP2P46087 812 aaKnown RBP9.21□□□□□ -0.93
USP4-211ENST00000485450 ATP8B2P98198 1209 aa9.21□□□□□ -0.93
USP4-211ENST00000485450 CLEC17AQ6ZS10 378 aa9.21□□□□□ -0.93
USP4-211ENST00000485450 SNX21Q969T3 373 aa9.21□□□□□ -0.93
USP4-211ENST00000485450 A0A0G2JLW4 131 aa9.21□□□□□ -0.94
USP4-211ENST00000485450 CHRNA5P30532 468 aa9.21□□□□□ -0.94
USP4-211ENST00000485450 KIAA2012Q0VF49 1180 aa9.21□□□□□ -0.94
USP4-211ENST00000485450 CCDC93Q567U6 631 aa9.21□□□□□ -0.94
USP4-211ENST00000485450 NUTM1Q86Y26 1132 aa9.21□□□□□ -0.94
USP4-211ENST00000485450 PRIMPOLQ96LW4 560 aa9.21□□□□□ -0.94
USP4-211ENST00000485450 BICC1Q9H694 974 aaKnown RBP9.21□□□□□ -0.94
USP4-211ENST00000485450 PGAP2Q9UHJ9 254 aa9.21□□□□□ -0.94
USP4-211ENST00000485450 TNNQ9UQP3 1299 aa9.21□□□□□ -0.94
USP4-211ENST00000485450 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.21□□□□□ -0.94
USP4-211ENST00000485450 ATP5J2-PTCD1G3V325 749 aa9.21□□□□□ -0.94
USP4-211ENST00000485450 AIMP1Q12904 312 aaKnown RBP9.21□□□□□ -0.94
USP4-211ENST00000485450 SIRT2Q8IXJ6 389 aa9.21□□□□□ -0.94
USP4-211ENST00000485450 GREM2Q9H772 168 aa9.21□□□□□ -0.94
USP4-211ENST00000485450 FOXD4L1Q9NU39 408 aa9.21□□□□□ -0.94
USP4-211ENST00000485450 LEMD3Q9Y2U8 911 aa9.21□□□□□ -0.94
USP4-211ENST00000485450 SH3BP1Q9Y3L3 701 aa9.21□□□□□ -0.94
USP4-211ENST00000485450 AK9Q5TCS8 1911 aa9.2□□□□□ -0.94
USP4-211ENST00000485450 ZBED3Q96IU2 234 aaPredicted RBP9.2□□□□□ -0.94
USP4-211ENST00000485450 FEZ2Q9UHY8 353 aaPredicted RBP9.2□□□□□ -0.94
USP4-211ENST00000485450 DDX19BQ9UMR2 479 aa9.2□□□□□ -0.94
USP4-211ENST00000485450 LOC285556D6RIA3 1793 aa9.2□□□□□ -0.94
USP4-211ENST00000485450 HDAC1Q13547 482 aaPredicted RBP9.2□□□□□ -0.94
USP4-211ENST00000485450 CEP85Q6P2H3 762 aa9.2□□□□□ -0.94
USP4-211ENST00000485450 SUPT20HQ8NEM7 779 aa9.2□□□□□ -0.94
USP4-211ENST00000485450 CELF1Q92879 486 aaKnown RBP9.2□□□□□ -0.94
USP4-211ENST00000485450 CCDC39Q9UFE4 941 aa9.2□□□□□ -0.94
USP4-211ENST00000485450 MINPP1Q9UNW1 487 aa9.2□□□□□ -0.94
USP4-211ENST00000485450 XDHP47989 1333 aa9.2□□□□□ -0.94
USP4-211ENST00000485450 FAM205AQ6ZU69 1335 aa9.2□□□□□ -0.94
USP4-211ENST00000485450 APPP05067 770 aa9.19□□□□□ -0.94
USP4-211ENST00000485450 GPTP24298 496 aa9.19□□□□□ -0.94
USP4-211ENST00000485450 HMGN5P82970 282 aaKnown RBP9.19□□□□□ -0.94
USP4-211ENST00000485450 PPIL4Q8WUA2 492 aaKnown RBP eCLIP9.19□□□□□ -0.94
USP4-211ENST00000485450 BORCS6Q96GS4 357 aa9.19□□□□□ -0.94
USP4-211ENST00000485450 CDC5LQ99459 802 aaKnown RBP9.19□□□□□ -0.94
USP4-211ENST00000485450 MEIS3Q99687 375 aa9.19□□□□□ -0.94
USP4-211ENST00000485450 RPAP2Q8IXW5 612 aaPredicted RBP9.19□□□□□ -0.94
USP4-211ENST00000485450 GMLQ99445 158 aa9.19□□□□□ -0.94
USP4-211ENST00000485450 MRIQ9BWK5 157 aa9.19□□□□□ -0.94
USP4-211ENST00000485450 FAM177BA6PVY3 158 aa9.19□□□□□ -0.94
USP4-211ENST00000485450 UBE3BQ7Z3V4 1068 aa9.19□□□□□ -0.94
USP4-211ENST00000485450 ANKRD2Q9GZV1 360 aa9.19□□□□□ -0.94
USP4-211ENST00000485450 NAV1Q8NEY1 1877 aa9.19□□□□□ -0.94
USP4-211ENST00000485450 ITGA6P23229 1130 aa9.18□□□□□ -0.94
USP4-211ENST00000485450 ATP2B4P23634 1241 aa9.18□□□□□ -0.94
USP4-211ENST00000485450 RPS8P62241 208 aaKnown RBP9.18□□□□□ -0.94
USP4-211ENST00000485450 TSGA10IPQ3SY00 556 aa9.18□□□□□ -0.94
USP4-211ENST00000485450 MTMR14Q8NCE2 650 aa9.18□□□□□ -0.94
USP4-211ENST00000485450 LMNB1P20700 586 aa9.18□□□□□ -0.94
USP4-211ENST00000485450 GOLGA6L22H0YM25 854 aa9.18□□□□□ -0.94
USP4-211ENST00000485450 HCLS1P14317 486 aaPredicted RBP9.18□□□□□ -0.94
USP4-211ENST00000485450 GPSM2P81274 684 aa9.18□□□□□ -0.94
USP4-211ENST00000485450 UBE4AQ14139 1066 aa9.18□□□□□ -0.94
USP4-211ENST00000485450 FBXO33Q7Z6M2 555 aa9.18□□□□□ -0.94
USP4-211ENST00000485450 TBC1D16Q8TBP0 767 aa9.18□□□□□ -0.94
USP4-211ENST00000485450 GNAI2P04899 355 aa9.17□□□□□ -0.94
USP4-211ENST00000485450 RBSNQ9H1K0 784 aa9.17□□□□□ -0.94
USP4-211ENST00000485450 POLLQ9UGP5 575 aa9.17□□□□□ -0.94
USP4-211ENST00000485450 ATAD5Q96QE3 1844 aa9.17□□□□□ -0.94
USP4-211ENST00000485450 POTECB2RU33 542 aa9.17□□□□□ -0.94
USP4-211ENST00000485450 U2AF2P26368 475 aaKnown RBP eCLIP9.17□□□□□ -0.94
USP4-211ENST00000485450 MYH2Q9UKX2 1941 aa9.17□□□□□ -0.94
USP4-211ENST00000485450 ZNF280AP59817 542 aaPredicted RBP9.17□□□□□ -0.94
USP4-211ENST00000485450 DDX46Q7L014 1031 aaKnown RBP9.17□□□□□ -0.94
USP4-211ENST00000485450 DDX49Q9Y6V7 483 aaKnown RBP9.17□□□□□ -0.94
USP4-211ENST00000485450 PPP4R3CPQ6ZMV5 832 aa9.16□□□□□ -0.94
USP4-211ENST00000485450 RPGRQ92834 1020 aaKnown RBP9.16□□□□□ -0.94
USP4-211ENST00000485450 SEC31BQ9NQW1 1179 aa9.16□□□□□ -0.94
USP4-211ENST00000485450 ANKRD18BA2A2Z9 1011 aa9.16□□□□□ -0.94
USP4-211ENST00000485450 SEMA3EO15041 775 aa9.16□□□□□ -0.94
USP4-211ENST00000485450 PTMAP06454 111 aaKnown RBP9.16□□□□□ -0.94
USP4-211ENST00000485450 VIL1P09327 827 aaKnown RBP9.16□□□□□ -0.94
USP4-211ENST00000485450 HMGB1P09429 215 aaKnown RBP9.16□□□□□ -0.94
USP4-211ENST00000485450 ARID4AP29374 1257 aaPredicted RBP9.16□□□□□ -0.94
USP4-211ENST00000485450 IARSP41252 1262 aaKnown RBP9.16□□□□□ -0.94
USP4-211ENST00000485450 MPNDQ8N594 471 aa9.16□□□□□ -0.94
USP4-211ENST00000485450 SUGT1Q9Y2Z0 365 aa9.16□□□□□ -0.94
USP4-211ENST00000485450 RPAP1Q9BWH6 1393 aaPredicted RBP9.16□□□□□ -0.94
USP4-211ENST00000485450 EYA2O00167 538 aa9.15□□□□□ -0.94
USP4-211ENST00000485450 MCCP23508 829 aa9.15□□□□□ -0.94
USP4-211ENST00000485450 MFAP1P55081 439 aaKnown RBP9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 229.1 ms