RNA–Protein interactions for RNA: ENST00000482158.1

SF3B1-210, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 772 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-210ENST00000482158 GDF6Q6KF10 455 aaPredicted RBP9.46□□□□□ -0.9
SF3B1-210ENST00000482158 METTL5Q9NRN9 209 aaKnown RBP9.46□□□□□ -0.9
SF3B1-210ENST00000482158 PPM1HQ9ULR3 514 aa9.46□□□□□ -0.9
SF3B1-210ENST00000482158 FBXO24O75426 580 aa9.45□□□□□ -0.9
SF3B1-210ENST00000482158 EPHA1P21709 976 aa9.45□□□□□ -0.9
SF3B1-210ENST00000482158 LORP23490 312 aaPredicted RBP9.45□□□□□ -0.9
SF3B1-210ENST00000482158 C9orf131Q5VYM1 1079 aa9.45□□□□□ -0.9
SF3B1-210ENST00000482158 PRDM6Q9NQX0 595 aa9.45□□□□□ -0.9
SF3B1-210ENST00000482158 ZNF76P36508 570 aa9.44□□□□□ -0.9
SF3B1-210ENST00000482158 ZNF423Q2M1K9 1284 aa9.44□□□□□ -0.9
SF3B1-210ENST00000482158 RPS26P11Q5JNZ5 115 aaPredicted RBP9.44□□□□□ -0.9
SF3B1-210ENST00000482158 CLEC4MQ9H2X3 399 aaPredicted RBP9.44□□□□□ -0.9
SF3B1-210ENST00000482158 SEC31BQ9NQW1 1179 aa9.44□□□□□ -0.9
SF3B1-210ENST00000482158 TTF2Q9UNY4 1162 aaKnown RBP9.44□□□□□ -0.9
SF3B1-210ENST00000482158 WIPF1O43516 503 aa9.43□□□□□ -0.9
SF3B1-210ENST00000482158 LILRB5O75023 590 aa9.43□□□□□ -0.9
SF3B1-210ENST00000482158 CDC27P30260 824 aa9.43□□□□□ -0.9
SF3B1-210ENST00000482158 RAD51AP2Q09MP3 1159 aa9.43□□□□□ -0.9
SF3B1-210ENST00000482158 TPTE2Q6XPS3 522 aa9.43□□□□□ -0.9
SF3B1-210ENST00000482158 IL22RA1Q8N6P7 574 aa9.43□□□□□ -0.9
SF3B1-210ENST00000482158 RNF34Q969K3 372 aa9.43□□□□□ -0.9
SF3B1-210ENST00000482158 ARHGEF15O94989 841 aa9.42□□□□□ -0.9
SF3B1-210ENST00000482158 NID1P14543 1247 aa9.42□□□□□ -0.9
SF3B1-210ENST00000482158 DGKGP49619 791 aa9.42□□□□□ -0.9
SF3B1-210ENST00000482158 PCDH1Q08174 1060 aa9.42□□□□□ -0.9
SF3B1-210ENST00000482158 HGSNATQ68CP4 663 aa9.42□□□□□ -0.9
SF3B1-210ENST00000482158 NECAB3Q96P71 396 aaPredicted RBP9.42□□□□□ -0.9
SF3B1-210ENST00000482158 TRIM56Q9BRZ2 755 aaKnown RBP9.42□□□□□ -0.9
SF3B1-210ENST00000482158 ZFYVE1Q9HBF4 777 aa9.42□□□□□ -0.9
SF3B1-210ENST00000482158 ENC1O14682 589 aa9.41□□□□□ -0.9
SF3B1-210ENST00000482158 B3GALT4O96024 378 aa9.41□□□□□ -0.9
SF3B1-210ENST00000482158 ESRRAP11474 423 aaPredicted RBP9.41□□□□□ -0.9
SF3B1-210ENST00000482158 ERMP1Q7Z2K6 904 aa9.41□□□□□ -0.9
SF3B1-210ENST00000482158 CACTIN-AS1Q8N1I8 211 aa9.41□□□□□ -0.9
SF3B1-210ENST00000482158 NOC4LQ9BVI4 516 aaKnown RBP9.41□□□□□ -0.9
SF3B1-210ENST00000482158 SOX1O00570 391 aaPredicted RBP9.4□□□□□ -0.9
SF3B1-210ENST00000482158 TM4SF5O14894 197 aa9.4□□□□□ -0.9
SF3B1-210ENST00000482158 CELA3AP09093 270 aa9.4□□□□□ -0.9
SF3B1-210ENST00000482158 AMPD1P23109 780 aa9.4□□□□□ -0.9
SF3B1-210ENST00000482158 ZNF157P51786 506 aaPredicted RBP9.4□□□□□ -0.9
SF3B1-210ENST00000482158 MSL1Q68DK7 614 aa9.4□□□□□ -0.9
SF3B1-210ENST00000482158 SV2BQ7L1I2 683 aa9.4□□□□□ -0.9
SF3B1-210ENST00000482158 NT5DC4Q86YG4 428 aa9.4□□□□□ -0.9
SF3B1-210ENST00000482158 PPME1Q9Y570 386 aa9.4□□□□□ -0.9
SF3B1-210ENST00000482158 H3BRJ5 948 aa9.39□□□□□ -0.91
SF3B1-210ENST00000482158 PAGE1O75459 146 aa9.39□□□□□ -0.91
SF3B1-210ENST00000482158 CCDC85BQ15834 202 aaPredicted RBP9.39□□□□□ -0.91
SF3B1-210ENST00000482158 TXNDC11Q6PKC3 985 aa9.39□□□□□ -0.91
SF3B1-210ENST00000482158 SVOPQ8N4V2 548 aa9.39□□□□□ -0.91
SF3B1-210ENST00000482158 COPRSQ9NQ92 184 aa9.39□□□□□ -0.91
SF3B1-210ENST00000482158 LINC01387J3KSC0 135 aa9.38□□□□□ -0.91
SF3B1-210ENST00000482158 CDC25BP30305 580 aa9.38□□□□□ -0.91
SF3B1-210ENST00000482158 SNRPNP63162 240 aaKnown RBP9.38□□□□□ -0.91
SF3B1-210ENST00000482158 IKBKEQ14164 716 aa9.38□□□□□ -0.91
SF3B1-210ENST00000482158 LINC00114Q6XXX2 140 aa9.38□□□□□ -0.91
SF3B1-210ENST00000482158 CEP44Q9C0F1 390 aa9.38□□□□□ -0.91
SF3B1-210ENST00000482158 RACK1P63244 317 aaKnown RBP9.37□□□□□ -0.91
SF3B1-210ENST00000482158 ZNF394Q53GI3 561 aa9.37□□□□□ -0.91
SF3B1-210ENST00000482158 HS2ST1Q7LGA3 356 aa9.37□□□□□ -0.91
SF3B1-210ENST00000482158 WFDC8Q8IUA0 241 aa9.37□□□□□ -0.91
SF3B1-210ENST00000482158 STK35Q8TDR2 534 aa9.37□□□□□ -0.91
SF3B1-210ENST00000482158 SRA1Q9HD15 236 aaKnown RBP9.37□□□□□ -0.91
SF3B1-210ENST00000482158 TMEM39AQ9NV64 488 aa9.37□□□□□ -0.91
SF3B1-210ENST00000482158 GPN3Q9UHW5 284 aaPredicted RBP9.37□□□□□ -0.91
SF3B1-210ENST00000482158 GGT7Q9UJ14 662 aa9.37□□□□□ -0.91
SF3B1-210ENST00000482158 ERCC5P28715 1186 aaPredicted RBP9.36□□□□□ -0.91
SF3B1-210ENST00000482158 RASIP1Q5U651 963 aa9.36□□□□□ -0.91
SF3B1-210ENST00000482158 DMRTC2Q8IXT2 367 aaPredicted RBP9.36□□□□□ -0.91
SF3B1-210ENST00000482158 NEDD1Q8NHV4 660 aa9.36□□□□□ -0.91
SF3B1-210ENST00000482158 TRIM11Q96F44 468 aa9.36□□□□□ -0.91
SF3B1-210ENST00000482158 RSRP1Q9BUV0 290 aa9.36□□□□□ -0.91
SF3B1-210ENST00000482158 DDX41Q9UJV9 622 aaKnown RBP9.36□□□□□ -0.91
SF3B1-210ENST00000482158 PCDHGB7Q9Y5F8 929 aa9.36□□□□□ -0.91
SF3B1-210ENST00000482158 F6X3S4 739 aa9.35□□□□□ -0.91
SF3B1-210ENST00000482158 BMP6P22004 513 aa9.35□□□□□ -0.91
SF3B1-210ENST00000482158 CABP4P57796 275 aa9.35□□□□□ -0.91
SF3B1-210ENST00000482158 SETDB1Q15047 1291 aa9.35□□□□□ -0.91
SF3B1-210ENST00000482158 SOX17Q9H6I2 414 aaPredicted RBP9.35□□□□□ -0.91
SF3B1-210ENST00000482158 ENAMQ9NRM1 1142 aa9.35□□□□□ -0.91
SF3B1-210ENST00000482158 KBTBD4Q9NVX7 518 aa9.35□□□□□ -0.91
SF3B1-210ENST00000482158 FSCN2O14926 492 aa9.34□□□□□ -0.91
SF3B1-210ENST00000482158 DEAF1O75398 565 aaPredicted RBP9.34□□□□□ -0.91
SF3B1-210ENST00000482158 PIP4K2BP78356 416 aa9.34□□□□□ -0.91
SF3B1-210ENST00000482158 MAP3K11Q16584 847 aa9.34□□□□□ -0.91
SF3B1-210ENST00000482158 GALNT11Q8NCW6 608 aa9.34□□□□□ -0.91
SF3B1-210ENST00000482158 WNT8BQ93098 351 aa9.34□□□□□ -0.91
SF3B1-210ENST00000482158 CARD10Q9BWT7 1032 aa9.34□□□□□ -0.91
SF3B1-210ENST00000482158 NRSN2Q9GZP1 204 aa9.34□□□□□ -0.91
SF3B1-210ENST00000482158 RRAGCQ9HB90 399 aa9.34□□□□□ -0.91
SF3B1-210ENST00000482158 FAM177BA6PVY3 158 aa9.33□□□□□ -0.92
SF3B1-210ENST00000482158 LIG3P49916 1009 aa9.33□□□□□ -0.92
SF3B1-210ENST00000482158 USP48Q86UV5 1035 aa9.33□□□□□ -0.92
SF3B1-210ENST00000482158 PHC3Q8NDX5 983 aa9.33□□□□□ -0.92
SF3B1-210ENST00000482158 SLC7A3Q8WY07 619 aa9.33□□□□□ -0.92
SF3B1-210ENST00000482158 TGIF2Q9GZN2 237 aa9.33□□□□□ -0.92
SF3B1-210ENST00000482158 TLR6Q9Y2C9 796 aa9.33□□□□□ -0.92
SF3B1-210ENST00000482158 PPP2R3AQ06190 1150 aa9.32□□□□□ -0.92
SF3B1-210ENST00000482158 PCNX4Q63HM2 1172 aa9.32□□□□□ -0.92
SF3B1-210ENST00000482158 KLHDC7BQ96G42 594 aa9.32□□□□□ -0.92
SF3B1-210ENST00000482158 TMEM74Q96NL1 305 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms