RNA–Protein interactions for RNA: ENST00000474020.5

ATPAF1-204, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 535 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-204ENST00000474020 IQSEC2Q5JU85 1478 aa7.49□□□□□ -1.21
ATPAF1-204ENST00000474020 ZMYM3Q14202 1370 aa7.49□□□□□ -1.21
ATPAF1-204ENST00000474020 SHISA8B8ZZ34 492 aa7.49□□□□□ -1.21
ATPAF1-204ENST00000474020 SEC13P55735 322 aa7.49□□□□□ -1.21
ATPAF1-204ENST00000474020 PMFBP1Q8TBY8 1022 aa7.49□□□□□ -1.21
ATPAF1-204ENST00000474020 C7orf43Q8WVR3 580 aa7.49□□□□□ -1.21
ATPAF1-204ENST00000474020 EDARADDQ8WWZ3 215 aa7.49□□□□□ -1.21
ATPAF1-204ENST00000474020 GGA1Q9UJY5 639 aa7.49□□□□□ -1.21
ATPAF1-204ENST00000474020 DNMT3AQ9Y6K1 912 aaPredicted RBP7.49□□□□□ -1.21
ATPAF1-204ENST00000474020 FAM135BQ49AJ0 1406 aa7.49□□□□□ -1.21
ATPAF1-204ENST00000474020 CNTNAP5Q8WYK1 1306 aa7.49□□□□□ -1.21
ATPAF1-204ENST00000474020 SHPRHQ149N8 1683 aa7.48□□□□□ -1.21
ATPAF1-204ENST00000474020 MYO5BQ9ULV0 1848 aa7.48□□□□□ -1.21
ATPAF1-204ENST00000474020 FAM196BA6NMK8 535 aa7.48□□□□□ -1.21
ATPAF1-204ENST00000474020 EFSO43281 561 aa7.48□□□□□ -1.21
ATPAF1-204ENST00000474020 CD33P20138 364 aa7.48□□□□□ -1.21
ATPAF1-204ENST00000474020 LMOD1P29536 600 aaPredicted RBP7.48□□□□□ -1.21
ATPAF1-204ENST00000474020 LMOD3Q0VAK6 560 aa7.48□□□□□ -1.21
ATPAF1-204ENST00000474020 PTK7Q13308 1070 aa7.48□□□□□ -1.21
ATPAF1-204ENST00000474020 LAMC2Q13753 1193 aa7.48□□□□□ -1.21
ATPAF1-204ENST00000474020 CRTC2Q53ET0 693 aaPredicted RBP7.48□□□□□ -1.21
ATPAF1-204ENST00000474020 C1orf53Q5VUE5 145 aa7.48□□□□□ -1.21
ATPAF1-204ENST00000474020 FTSJ3Q8IY81 847 aaKnown RBP7.48□□□□□ -1.21
ATPAF1-204ENST00000474020 RHPN1Q8TCX5 695 aa7.48□□□□□ -1.21
ATPAF1-204ENST00000474020 GGNBP2Q9H3C7 697 aa7.48□□□□□ -1.21
ATPAF1-204ENST00000474020 CHMP4BQ9H444 224 aaKnown RBP7.48□□□□□ -1.21
ATPAF1-204ENST00000474020 ANKRD26Q9UPS8 1709 aa7.48□□□□□ -1.21
ATPAF1-204ENST00000474020 EID1Q9Y6B2 187 aa7.48□□□□□ -1.21
ATPAF1-204ENST00000474020 IL16Q14005 1332 aa7.48□□□□□ -1.21
ATPAF1-204ENST00000474020 EDC4Q6P2E9 1401 aaKnown RBP7.47□□□□□ -1.21
ATPAF1-204ENST00000474020 FYB1O15117 783 aa7.47□□□□□ -1.21
ATPAF1-204ENST00000474020 IPO8O15397 1037 aaKnown RBP7.47□□□□□ -1.21
ATPAF1-204ENST00000474020 C21orf2O43822 256 aa7.47□□□□□ -1.21
ATPAF1-204ENST00000474020 PPP1R12BO60237 982 aaPredicted RBP7.47□□□□□ -1.21
ATPAF1-204ENST00000474020 LRRC69Q6ZNQ3 347 aa7.47□□□□□ -1.21
ATPAF1-204ENST00000474020 STAG2Q8N3U4 1231 aa7.47□□□□□ -1.21
ATPAF1-204ENST00000474020 GAS2L2Q8NHY3 880 aa7.47□□□□□ -1.21
ATPAF1-204ENST00000474020 FRAT1Q92837 279 aaPredicted RBP7.47□□□□□ -1.21
ATPAF1-204ENST00000474020 COG3Q96JB2 828 aa7.47□□□□□ -1.21
ATPAF1-204ENST00000474020 VRTNQ9H8Y1 702 aa7.47□□□□□ -1.21
ATPAF1-204ENST00000474020 AVENQ9NQS1 362 aaPredicted RBP7.47□□□□□ -1.21
ATPAF1-204ENST00000474020 MARK1Q9P0L2 795 aa7.47□□□□□ -1.21
ATPAF1-204ENST00000474020 RRP7AQ9Y3A4 280 aaKnown RBP7.47□□□□□ -1.21
ATPAF1-204ENST00000474020 NLRP1Q9C000 1473 aa7.47□□□□□ -1.21
ATPAF1-204ENST00000474020 PPIP5K1Q6PFW1 1433 aa7.46□□□□□ -1.21
ATPAF1-204ENST00000474020 KIF20BQ96Q89 1820 aa7.46□□□□□ -1.21
ATPAF1-204ENST00000474020 USP17L15C9J2P7 530 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 USP17L10C9JJH3 530 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 USP17L13C9JLJ4 530 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 USP17L12C9JPN9 530 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 USP17L11C9JVI0 530 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 USP17L21D6R901 530 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 USP17L18D6R9N7 530 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 USP17L22D6RA61 530 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 USP17L17D6RBQ6 530 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 USP17L19D6RCP7 530 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 USP17L20D6RJB6 530 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 EPXP11678 715 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 USP17L24Q0WX57 530 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 ZKSCAN2Q63HK3 967 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 NPM2Q86SE8 214 aaKnown RBP7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 ZNF428Q96B54 188 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 BACH2Q9BYV9 841 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 PHACTR1Q9C0D0 580 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 NEUROD4Q9HD90 331 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 HCN4Q9Y3Q4 1203 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 KDM2BQ8NHM5 1336 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 ADGRB2O60241 1585 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 TMEM2Q9UHN6 1383 aa7.46□□□□□ -1.22
ATPAF1-204ENST00000474020 TECPR2O15040 1411 aa7.45□□□□□ -1.22
ATPAF1-204ENST00000474020 KNDC1Q76NI1 1749 aa7.45□□□□□ -1.22
ATPAF1-204ENST00000474020 NEURL1BA8MQ27 555 aa7.45□□□□□ -1.22
ATPAF1-204ENST00000474020 PPM1GO15355 546 aaPredicted RBP7.45□□□□□ -1.22
ATPAF1-204ENST00000474020 BCAR3O75815 825 aa7.45□□□□□ -1.22
ATPAF1-204ENST00000474020 IGHA1P01876 353 aa7.45□□□□□ -1.22
ATPAF1-204ENST00000474020 ADH6P28332 368 aa7.45□□□□□ -1.22
ATPAF1-204ENST00000474020 TMPOP42166 694 aaKnown RBP7.45□□□□□ -1.22
ATPAF1-204ENST00000474020 RARSP54136 660 aaKnown RBP7.45□□□□□ -1.22
ATPAF1-204ENST00000474020 DPYDQ12882 1025 aa7.45□□□□□ -1.22
ATPAF1-204ENST00000474020 C20orf194Q5TEA3 1177 aa7.45□□□□□ -1.22
ATPAF1-204ENST00000474020 ANKMY2Q8IV38 441 aa7.45□□□□□ -1.22
ATPAF1-204ENST00000474020 SUGP2Q8IX01 1082 aaKnown RBP eCLIP7.45□□□□□ -1.22
ATPAF1-204ENST00000474020 C2orf49Q9BVC5 232 aaPredicted RBP7.45□□□□□ -1.22
ATPAF1-204ENST00000474020 RWDD1Q9H446 243 aaPredicted RBP7.45□□□□□ -1.22
ATPAF1-204ENST00000474020 STRN4Q9NRL3 753 aa7.45□□□□□ -1.22
ATPAF1-204ENST00000474020 MKL2Q9ULH7 1088 aa7.45□□□□□ -1.22
ATPAF1-204ENST00000474020 KIF16BQ96L93 1317 aa7.45□□□□□ -1.22
ATPAF1-204ENST00000474020 CPS1P31327 1500 aa7.44□□□□□ -1.22
ATPAF1-204ENST00000474020 PIK3R2O00459 728 aa7.44□□□□□ -1.22
ATPAF1-204ENST00000474020 RIPK4P57078 832 aa7.44□□□□□ -1.22
ATPAF1-204ENST00000474020 SNRPNP63162 240 aaKnown RBP7.44□□□□□ -1.22
ATPAF1-204ENST00000474020 ZNF468Q5VIY5 522 aaPredicted RBP7.44□□□□□ -1.22
ATPAF1-204ENST00000474020 WAPLQ7Z5K2 1190 aa7.44□□□□□ -1.22
ATPAF1-204ENST00000474020 TXNDC2Q86VQ3 553 aa7.44□□□□□ -1.22
ATPAF1-204ENST00000474020 SCG3Q8WXD2 468 aaKnown RBP7.44□□□□□ -1.22
ATPAF1-204ENST00000474020 NUDT16Q96DE0 195 aaKnown RBP7.44□□□□□ -1.22
ATPAF1-204ENST00000474020 UPF2Q9HAU5 1272 aaKnown RBP7.44□□□□□ -1.22
ATPAF1-204ENST00000474020 SMC4Q9NTJ3 1288 aa7.44□□□□□ -1.22
ATPAF1-204ENST00000474020 ANKIB1Q9P2G1 1089 aa7.44□□□□□ -1.22
ATPAF1-204ENST00000474020 KLF15Q9UIH9 416 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms