RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 A0A1B0GVL5 298 aa16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 ERICH2A1L162 156 aa16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 CYP2E1P05181 493 aaPredicted RBP16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 KIAA2012Q0VF49 1180 aa16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 TRIM29Q14134 588 aa16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 RABL6Q3YEC7 729 aaPredicted RBP16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 HMG20BQ9P0W2 317 aa16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 NCAPD2Q15021 1401 aa16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 PDE8BO95263 885 aa16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 ADCY5O95622 1261 aa16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 FILIP1Q7Z7B0 1213 aa16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 ANKRD18AQ8IVF6 992 aa16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 DNAJC25Q9H1X3 360 aa16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 KIF3AQ9Y496 699 aa16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 GOLGA6L19H0YKK7 550 aa16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 DHX16O60231 1041 aaKnown RBP16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 ST3GAL1Q11201 340 aa16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 CPLX2Q6PUV4 134 aaKnown RBP16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 NCOA7Q8NI08 942 aa16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 SETDB2Q96T68 719 aa16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 ISCA1Q9BUE6 129 aa16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 CCNL1Q9UK58 526 aaPredicted RBP16.1■□□□□ 0.17
CCDC88A-211ENST00000471947 RFC4P35249 363 aa16.09■□□□□ 0.17
CCDC88A-211ENST00000471947 AKAP17AQ02040 695 aaKnown RBP16.09■□□□□ 0.17
CCDC88A-211ENST00000471947 SENP2Q9HC62 589 aa16.09■□□□□ 0.17
CCDC88A-211ENST00000471947 KINO60870 393 aaKnown RBP16.09■□□□□ 0.17
CCDC88A-211ENST00000471947 MCM5P33992 734 aa16.09■□□□□ 0.17
CCDC88A-211ENST00000471947 CASP7P55210 303 aa16.09■□□□□ 0.17
CCDC88A-211ENST00000471947 FSIP1Q8NA03 581 aa16.09■□□□□ 0.17
CCDC88A-211ENST00000471947 UBN2Q6ZU65 1347 aa16.09■□□□□ 0.17
CCDC88A-211ENST00000471947 GOLGA8AA7E2F4 631 aa16.09■□□□□ 0.17
CCDC88A-211ENST00000471947 PDE6AP16499 860 aa16.09■□□□□ 0.17
CCDC88A-211ENST00000471947 PTPN21Q16825 1174 aa16.09■□□□□ 0.17
CCDC88A-211ENST00000471947 USP21Q9UK80 565 aa16.09■□□□□ 0.17
CCDC88A-211ENST00000471947 ATP2B2Q01814 1243 aa16.08■□□□□ 0.17
CCDC88A-211ENST00000471947 RASGRF1Q13972 1273 aa16.08■□□□□ 0.17
CCDC88A-211ENST00000471947 ZMYM1Q5SVZ6 1142 aa16.08■□□□□ 0.17
CCDC88A-211ENST00000471947 CCAR1Q8IX12 1150 aaKnown RBP16.08■□□□□ 0.17
CCDC88A-211ENST00000471947 APPBP2Q92624 585 aa16.08■□□□□ 0.17
CCDC88A-211ENST00000471947 XRN1Q8IZH2 1706 aaKnown RBP16.08■□□□□ 0.17
CCDC88A-211ENST00000471947 METAP2P50579 478 aaKnown RBP eCLIP16.08■□□□□ 0.16
CCDC88A-211ENST00000471947 CHRNDQ07001 517 aa16.08■□□□□ 0.16
CCDC88A-211ENST00000471947 MAP3K11Q16584 847 aa16.08■□□□□ 0.16
CCDC88A-211ENST00000471947 SPATA5Q8NB90 893 aa16.08■□□□□ 0.16
CCDC88A-211ENST00000471947 UBAC1Q9BSL1 405 aa16.08■□□□□ 0.16
CCDC88A-211ENST00000471947 FAM13BQ9NYF5 915 aa16.08■□□□□ 0.16
CCDC88A-211ENST00000471947 BAZ2BQ9UIF8 2168 aaKnown RBP16.07■□□□□ 0.16
CCDC88A-211ENST00000471947 NR1I2O75469 434 aa16.07■□□□□ 0.16
CCDC88A-211ENST00000471947 DYNLL1P63167 89 aaKnown RBP16.07■□□□□ 0.16
CCDC88A-211ENST00000471947 AEBP2Q6ZN18 517 aaPredicted RBP16.07■□□□□ 0.16
CCDC88A-211ENST00000471947 RIMBP2O15034 1052 aa16.07■□□□□ 0.16
CCDC88A-211ENST00000471947 ANO6Q4KMQ2 910 aa16.07■□□□□ 0.16
CCDC88A-211ENST00000471947 KLHL34Q8N239 644 aa16.07■□□□□ 0.16
CCDC88A-211ENST00000471947 RASSF8Q8NHQ8 419 aa16.07■□□□□ 0.16
CCDC88A-211ENST00000471947 GTF3C6Q969F1 213 aa16.07■□□□□ 0.16
CCDC88A-211ENST00000471947 ZNF652Q9Y2D9 606 aa16.07■□□□□ 0.16
CCDC88A-211ENST00000471947 CCDC192P0DO97 292 aa16.07■□□□□ 0.16
CCDC88A-211ENST00000471947 CAVIN4Q5BKX8 364 aa16.07■□□□□ 0.16
CCDC88A-211ENST00000471947 AATFQ9NY61 560 aaKnown RBP eCLIP16.07■□□□□ 0.16
CCDC88A-211ENST00000471947 KCNJ14Q9UNX9 436 aa16.07■□□□□ 0.16
CCDC88A-211ENST00000471947 SLC12A7Q9Y666 1083 aa16.07■□□□□ 0.16
CCDC88A-211ENST00000471947 MED1Q15648 1581 aaPredicted RBP16.07■□□□□ 0.16
CCDC88A-211ENST00000471947 PUM3Q15397 648 aaKnown RBP16.06■□□□□ 0.16
CCDC88A-211ENST00000471947 CELF1Q92879 486 aaKnown RBP16.06■□□□□ 0.16
CCDC88A-211ENST00000471947 USP28Q96RU2 1077 aa16.06■□□□□ 0.16
CCDC88A-211ENST00000471947 COL15A1P39059 1388 aa16.06■□□□□ 0.16
CCDC88A-211ENST00000471947 C3orf67Q6ZVT6 689 aa16.06■□□□□ 0.16
CCDC88A-211ENST00000471947 UIMC1Q96RL1 719 aa16.06■□□□□ 0.16
CCDC88A-211ENST00000471947 HELLSQ9NRZ9 838 aa16.06■□□□□ 0.16
CCDC88A-211ENST00000471947 C6orf229H3BNL8 230 aa16.06■□□□□ 0.16
CCDC88A-211ENST00000471947 MFSD6Q6ZSS7 791 aa16.06■□□□□ 0.16
CCDC88A-211ENST00000471947 LEO1Q8WVC0 666 aaPredicted RBP16.06■□□□□ 0.16
CCDC88A-211ENST00000471947 AK7Q96M32 723 aa16.06■□□□□ 0.16
CCDC88A-211ENST00000471947 ALG1Q9BT22 464 aa16.06■□□□□ 0.16
CCDC88A-211ENST00000471947 NACAP1Q9BZK3 213 aa16.06■□□□□ 0.16
CCDC88A-211ENST00000471947 RPAP1Q9BWH6 1393 aaPredicted RBP16.05■□□□□ 0.16
CCDC88A-211ENST00000471947 PDIA3P30101 505 aaKnown RBP16.05■□□□□ 0.16
CCDC88A-211ENST00000471947 ZSCAN25Q6NSZ9 544 aa16.05■□□□□ 0.16
CCDC88A-211ENST00000471947 NLRP3Q96P20 1036 aa16.05■□□□□ 0.16
CCDC88A-211ENST00000471947 TOPAZ1Q8N9V7 1692 aa16.05■□□□□ 0.16
CCDC88A-211ENST00000471947 FAM47AQ5JRC9 791 aa16.05■□□□□ 0.16
CCDC88A-211ENST00000471947 LCORLQ8N3X6 602 aa16.05■□□□□ 0.16
CCDC88A-211ENST00000471947 OVOS2A0A0G2JMS6 1433 aa16.04■□□□□ 0.16
CCDC88A-211ENST00000471947 UTYO14607 1347 aa16.04■□□□□ 0.16
CCDC88A-211ENST00000471947 KLRK1P26718 216 aa16.04■□□□□ 0.16
CCDC88A-211ENST00000471947 CDC5LQ99459 802 aaKnown RBP16.04■□□□□ 0.16
CCDC88A-211ENST00000471947 RGPD5Q99666 1765 aa16.04■□□□□ 0.16
CCDC88A-211ENST00000471947 LPIN2Q92539 896 aa16.04■□□□□ 0.16
CCDC88A-211ENST00000471947 TM6SF1Q9BZW5 370 aa16.04■□□□□ 0.16
CCDC88A-211ENST00000471947 VAT1LQ9HCJ6 419 aa16.04■□□□□ 0.16
CCDC88A-211ENST00000471947 GNL3LQ9NVN8 582 aaKnown RBP16.04■□□□□ 0.16
CCDC88A-211ENST00000471947 COL5A2P05997 1499 aaPredicted RBP16.04■□□□□ 0.16
CCDC88A-211ENST00000471947 PALLDQ8WX93 1383 aa16.04■□□□□ 0.16
CCDC88A-211ENST00000471947 MSL1Q68DK7 614 aa16.04■□□□□ 0.16
CCDC88A-211ENST00000471947 SCAND2PQ9GZW5 306 aaPredicted RBP16.04■□□□□ 0.16
CCDC88A-211ENST00000471947 SAP30BPQ9UHR5 308 aaKnown RBP16.04■□□□□ 0.16
CCDC88A-211ENST00000471947 IL6STP40189 918 aaPredicted RBP16.03■□□□□ 0.16
CCDC88A-211ENST00000471947 TBC1D10CQ8IV04 446 aa16.03■□□□□ 0.16
CCDC88A-211ENST00000471947 TSC1Q92574 1164 aa16.03■□□□□ 0.16
CCDC88A-211ENST00000471947 PPP1R1BQ9UD71 204 aaPredicted RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms