RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 GNL3LQ9NVN8 582 aaKnown RBP18.88■□□□□ 0.61
SDC3-203ENST00000471567 ADAMTSL1Q8N6G6 1762 aa18.88■□□□□ 0.61
SDC3-203ENST00000471567 ZNF646O15015 1829 aaPredicted RBP18.87■□□□□ 0.61
SDC3-203ENST00000471567 FRAT2O75474 233 aaPredicted RBP18.87■□□□□ 0.61
SDC3-203ENST00000471567 SAMD7Q7Z3H4 446 aa18.87■□□□□ 0.61
SDC3-203ENST00000471567 ERC1Q8IUD2 1116 aa18.87■□□□□ 0.61
SDC3-203ENST00000471567 OGFOD1Q8N543 542 aa18.87■□□□□ 0.61
SDC3-203ENST00000471567 TRPM4Q8TD43 1214 aa18.87■□□□□ 0.61
SDC3-203ENST00000471567 PGAP2Q9UHJ9 254 aa18.87■□□□□ 0.61
SDC3-203ENST00000471567 HIRAP54198 1017 aaPredicted RBP18.86■□□□□ 0.61
SDC3-203ENST00000471567 CERS5Q8N5B7 392 aa18.86■□□□□ 0.61
SDC3-203ENST00000471567 TBC1D22AQ8WUA7 517 aa18.86■□□□□ 0.61
SDC3-203ENST00000471567 XAGE2Q96GT9 111 aa18.86■□□□□ 0.61
SDC3-203ENST00000471567 HDAC9Q9UKV0 1011 aa18.86■□□□□ 0.61
SDC3-203ENST00000471567 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP18.86■□□□□ 0.61
SDC3-203ENST00000471567 SEMA3EO15041 775 aa18.85■□□□□ 0.61
SDC3-203ENST00000471567 ADORA1P30542 326 aa18.85■□□□□ 0.61
SDC3-203ENST00000471567 KIF4BQ2VIQ3 1234 aa18.85■□□□□ 0.61
SDC3-203ENST00000471567 TBC1D10BQ4KMP7 808 aaPredicted RBP18.85■□□□□ 0.61
SDC3-203ENST00000471567 NEUROD6Q96NK8 337 aa18.85■□□□□ 0.61
SDC3-203ENST00000471567 CRBNQ96SW2 442 aa18.85■□□□□ 0.61
SDC3-203ENST00000471567 MYOZ2Q9NPC6 264 aa18.85■□□□□ 0.61
SDC3-203ENST00000471567 IQSEC3Q9UPP2 1182 aaPredicted RBP18.85■□□□□ 0.61
SDC3-203ENST00000471567 EXOC6BQ9Y2D4 811 aa18.85■□□□□ 0.61
SDC3-203ENST00000471567 PHKA1P46020 1223 aa18.84■□□□□ 0.61
SDC3-203ENST00000471567 AAMPQ13685 434 aa18.84■□□□□ 0.61
SDC3-203ENST00000471567 TNNI3KQ59H18 835 aa18.84■□□□□ 0.61
SDC3-203ENST00000471567 MFSD14BQ5SR56 506 aa18.84■□□□□ 0.61
SDC3-203ENST00000471567 RBM26Q5T8P6 1007 aaKnown RBP18.84■□□□□ 0.61
SDC3-203ENST00000471567 CCDC102BQ68D86 513 aa18.84■□□□□ 0.61
SDC3-203ENST00000471567 KIAA0825Q8IV33 1275 aa18.84■□□□□ 0.61
SDC3-203ENST00000471567 CNTROBQ8N137 903 aa18.84■□□□□ 0.61
SDC3-203ENST00000471567 JAG2Q9Y219 1238 aa18.84■□□□□ 0.61
SDC3-203ENST00000471567 SUPT16HQ9Y5B9 1047 aaKnown RBP18.84■□□□□ 0.61
SDC3-203ENST00000471567 FPGT-TNNI3KV9GXZ4 949 aa18.84■□□□□ 0.61
SDC3-203ENST00000471567 ARAP2Q8WZ64 1704 aa18.83■□□□□ 0.61
SDC3-203ENST00000471567 RAB11FIP3O75154 756 aa18.83■□□□□ 0.6
SDC3-203ENST00000471567 EGFRP00533 1210 aa18.83■□□□□ 0.6
SDC3-203ENST00000471567 CHAF1AQ13111 956 aaPredicted RBP18.83■□□□□ 0.6
SDC3-203ENST00000471567 MAP1SQ66K74 1059 aaPredicted RBP18.83■□□□□ 0.6
SDC3-203ENST00000471567 WDR66Q8TBY9 1149 aa18.83■□□□□ 0.6
SDC3-203ENST00000471567 DENND2AQ9ULE3 1009 aa18.83■□□□□ 0.6
SDC3-203ENST00000471567 ITGBL1O95965 494 aaPredicted RBP18.82■□□□□ 0.6
SDC3-203ENST00000471567 HSPA6P17066 643 aa18.82■□□□□ 0.6
SDC3-203ENST00000471567 GORABQ5T7V8 394 aa18.82■□□□□ 0.6
SDC3-203ENST00000471567 SUGT1Q9Y2Z0 365 aa18.82■□□□□ 0.6
SDC3-203ENST00000471567 PDS5AQ29RF7 1337 aaKnown RBP18.81■□□□□ 0.6
SDC3-203ENST00000471567 RHPN1Q8TCX5 695 aa18.81■□□□□ 0.6
SDC3-203ENST00000471567 KIF1BPQ96EK5 621 aa18.81■□□□□ 0.6
SDC3-203ENST00000471567 PASKQ96RG2 1323 aa18.8■□□□□ 0.6
SDC3-203ENST00000471567 SCARF1Q14162 830 aa18.8■□□□□ 0.6
SDC3-203ENST00000471567 MTMR14Q8NCE2 650 aa18.8■□□□□ 0.6
SDC3-203ENST00000471567 SALL1Q9NSC2 1324 aa18.79■□□□□ 0.6
SDC3-203ENST00000471567 F8W031 263 aaPredicted RBP18.79■□□□□ 0.6
SDC3-203ENST00000471567 UQCRFS1P1P0C7P4 283 aa18.79■□□□□ 0.6
SDC3-203ENST00000471567 CCDC158Q5M9N0 1113 aa18.79■□□□□ 0.6
SDC3-203ENST00000471567 CDC37L1Q7L3B6 337 aa18.79■□□□□ 0.6
SDC3-203ENST00000471567 DCPSQ96C86 337 aaKnown RBP18.79■□□□□ 0.6
SDC3-203ENST00000471567 EAF2Q96CJ1 260 aaPredicted RBP18.79■□□□□ 0.6
SDC3-203ENST00000471567 ZBED3Q96IU2 234 aaPredicted RBP18.79■□□□□ 0.6
SDC3-203ENST00000471567 MRIQ9BWK5 157 aa18.79■□□□□ 0.6
SDC3-203ENST00000471567 TTF2Q9UNY4 1162 aaKnown RBP18.79■□□□□ 0.6
SDC3-203ENST00000471567 PCDHB15Q9Y5E8 787 aa18.79■□□□□ 0.6
SDC3-203ENST00000471567 WNT10BO00744 389 aa18.78■□□□□ 0.6
SDC3-203ENST00000471567 ARID4AP29374 1257 aaPredicted RBP18.78■□□□□ 0.6
SDC3-203ENST00000471567 APLP1P51693 650 aa18.78■□□□□ 0.6
SDC3-203ENST00000471567 HDLBPQ00341 1268 aaKnown RBP18.78■□□□□ 0.6
SDC3-203ENST00000471567 RASGRF1Q13972 1273 aa18.78■□□□□ 0.6
SDC3-203ENST00000471567 DLGAP5Q15398 846 aa18.78■□□□□ 0.6
SDC3-203ENST00000471567 CLASRPQ8N2M8 674 aaKnown RBP18.78■□□□□ 0.6
SDC3-203ENST00000471567 ZNF512BQ96KM6 892 aaPredicted RBP18.78■□□□□ 0.6
SDC3-203ENST00000471567 DBNDD2Q9BQY9 259 aa18.78■□□□□ 0.6
SDC3-203ENST00000471567 DCTPP1Q9H773 170 aa18.78■□□□□ 0.6
SDC3-203ENST00000471567 SERPINA10Q9UK55 444 aa18.78■□□□□ 0.6
SDC3-203ENST00000471567 COL1A1P02452 1464 aaPredicted RBP18.77■□□□□ 0.6
SDC3-203ENST00000471567 MAST3O60307 1309 aa18.77■□□□□ 0.6
SDC3-203ENST00000471567 PITPNM2Q9BZ72 1349 aa18.77■□□□□ 0.6
SDC3-203ENST00000471567 NBPF9Q3BBW0 867 aa18.77■□□□□ 0.6
SDC3-203ENST00000471567 ZGPATQ8N5A5 531 aaKnown RBP18.77■□□□□ 0.6
SDC3-203ENST00000471567 GGA3Q9NZ52 723 aa18.77■□□□□ 0.6
SDC3-203ENST00000471567 DBNLQ9UJU6 430 aaKnown RBP18.77■□□□□ 0.6
SDC3-203ENST00000471567 GRIK5Q16478 980 aa18.76■□□□□ 0.59
SDC3-203ENST00000471567 CFAP100Q494V2 611 aa18.76■□□□□ 0.59
SDC3-203ENST00000471567 ANGEL2Q5VTE6 544 aaKnown RBP18.76■□□□□ 0.59
SDC3-203ENST00000471567 AACSQ86V21 672 aa18.76■□□□□ 0.59
SDC3-203ENST00000471567 GLIS2Q9BZE0 524 aaPredicted RBP18.76■□□□□ 0.59
SDC3-203ENST00000471567 CCDC8Q9H0W5 538 aaPredicted RBP18.76■□□□□ 0.59
SDC3-203ENST00000471567 IL1RAPL2Q9NP60 686 aa18.76■□□□□ 0.59
SDC3-203ENST00000471567 MYH13Q9UKX3 1938 aa18.76■□□□□ 0.59
SDC3-203ENST00000471567 ASTN2O75129 1339 aaPredicted RBP18.75■□□□□ 0.59
SDC3-203ENST00000471567 SPDYE2BA6NHP3 402 aa18.75■□□□□ 0.59
SDC3-203ENST00000471567 APBB1O00213 710 aa18.75■□□□□ 0.59
SDC3-203ENST00000471567 SPDYE6P0CI01 402 aa18.75■□□□□ 0.59
SDC3-203ENST00000471567 TTC39AQ5SRH9 613 aa18.75■□□□□ 0.59
SDC3-203ENST00000471567 KRT26Q7Z3Y9 468 aa18.75■□□□□ 0.59
SDC3-203ENST00000471567 SULF1Q8IWU6 871 aa18.75■□□□□ 0.59
SDC3-203ENST00000471567 SPATA5Q8NB90 893 aa18.75■□□□□ 0.59
SDC3-203ENST00000471567 HMG20BQ9P0W2 317 aa18.75■□□□□ 0.59
SDC3-203ENST00000471567 MYO1BO43795 1136 aa18.74■□□□□ 0.59
SDC3-203ENST00000471567 LDHBP07195 334 aaKnown RBP18.74■□□□□ 0.59
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms