RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 USP2O75604 605 aaPredicted RBP8.86□□□□□ -0.99
HDAC1-204ENST00000471488 DDX58O95786 925 aaKnown RBP8.86□□□□□ -0.99
HDAC1-204ENST00000471488 TRIM28Q13263 835 aaKnown RBP8.86□□□□□ -0.99
HDAC1-204ENST00000471488 RASA3Q14644 834 aa8.86□□□□□ -0.99
HDAC1-204ENST00000471488 CNKSR2Q8WXI2 1034 aa8.86□□□□□ -0.99
HDAC1-204ENST00000471488 OTUD5Q96G74 571 aa8.86□□□□□ -0.99
HDAC1-204ENST00000471488 ARHGAP39Q9C0H5 1083 aa8.86□□□□□ -0.99
HDAC1-204ENST00000471488 BSDC1Q9NW68 430 aaPredicted RBP8.86□□□□□ -0.99
HDAC1-204ENST00000471488 RBBP6Q7Z6E9 1792 aaKnown RBP8.86□□□□□ -0.99
HDAC1-204ENST00000471488 BRCA2P51587 3418 aa8.85□□□□□ -0.99
HDAC1-204ENST00000471488 TCP10L2B9ZVM9 353 aa8.85□□□□□ -0.99
HDAC1-204ENST00000471488 SNAP23O00161 211 aa8.85□□□□□ -0.99
HDAC1-204ENST00000471488 PLIN1O60240 522 aa8.85□□□□□ -0.99
HDAC1-204ENST00000471488 WDR43Q15061 677 aaKnown RBP eCLIP8.85□□□□□ -0.99
HDAC1-204ENST00000471488 MTFR1Q15390 333 aa8.85□□□□□ -0.99
HDAC1-204ENST00000471488 HELBQ8NG08 1087 aaPredicted RBP8.85□□□□□ -0.99
HDAC1-204ENST00000471488 MAP3K2Q9Y2U5 619 aa8.85□□□□□ -0.99
HDAC1-204ENST00000471488 LEMD3Q9Y2U8 911 aa8.85□□□□□ -0.99
HDAC1-204ENST00000471488 CHMP3Q9Y3E7 222 aa8.85□□□□□ -0.99
HDAC1-204ENST00000471488 PPP2R3BQ9Y5P8 575 aa8.85□□□□□ -0.99
HDAC1-204ENST00000471488 CSADQ9Y600 493 aa8.85□□□□□ -0.99
HDAC1-204ENST00000471488 SSC5DA1L4H1 1573 aa8.85□□□□□ -0.99
HDAC1-204ENST00000471488 COL1A1P02452 1464 aaPredicted RBP8.84□□□□□ -0.99
HDAC1-204ENST00000471488 TRIOBPQ9H2D6 2365 aa8.84□□□□□ -0.99
HDAC1-204ENST00000471488 TAF5LO75529 589 aa8.84□□□□□ -0.99
HDAC1-204ENST00000471488 HOXB7P09629 217 aa8.84□□□□□ -0.99
HDAC1-204ENST00000471488 GTF2A2P52657 109 aa8.84□□□□□ -0.99
HDAC1-204ENST00000471488 NEXNQ0ZGT2 675 aa8.84□□□□□ -0.99
HDAC1-204ENST00000471488 MAP3K11Q16584 847 aa8.84□□□□□ -0.99
HDAC1-204ENST00000471488 CWF19L2Q2TBE0 894 aaKnown RBP8.84□□□□□ -0.99
HDAC1-204ENST00000471488 UBE3BQ7Z3V4 1068 aa8.84□□□□□ -0.99
HDAC1-204ENST00000471488 FAM43AQ8N2R8 423 aa8.84□□□□□ -0.99
HDAC1-204ENST00000471488 TTLL11Q8NHH1 800 aa8.84□□□□□ -0.99
HDAC1-204ENST00000471488 RAET1EQ8TD07 263 aa8.84□□□□□ -0.99
HDAC1-204ENST00000471488 BRI3BPQ8WY22 251 aa8.84□□□□□ -0.99
HDAC1-204ENST00000471488 PRMT6Q96LA8 375 aaPredicted RBP8.84□□□□□ -0.99
HDAC1-204ENST00000471488 HTATIP2Q9BUP3 242 aa8.84□□□□□ -0.99
HDAC1-204ENST00000471488 METTL22Q9BUU2 404 aaPredicted RBP8.84□□□□□ -0.99
HDAC1-204ENST00000471488 ANKRD2Q9GZV1 360 aa8.84□□□□□ -0.99
HDAC1-204ENST00000471488 CD209Q9NNX6 404 aa8.84□□□□□ -0.99
HDAC1-204ENST00000471488 MBIPQ9NS73 344 aa8.84□□□□□ -0.99
HDAC1-204ENST00000471488 NR2E3Q9Y5X4 410 aa8.84□□□□□ -0.99
HDAC1-204ENST00000471488 SPDYE2BA6NHP3 402 aa8.83□□□□□ -1
HDAC1-204ENST00000471488 FMNL1O95466 1100 aaPredicted RBP8.83□□□□□ -1
HDAC1-204ENST00000471488 SPDYE6P0CI01 402 aa8.83□□□□□ -1
HDAC1-204ENST00000471488 ITGA6P23229 1130 aa8.83□□□□□ -1
HDAC1-204ENST00000471488 VGLL4Q14135 290 aa8.83□□□□□ -1
HDAC1-204ENST00000471488 ZNF804AQ7Z570 1209 aa8.83□□□□□ -1
HDAC1-204ENST00000471488 CERS5Q8N5B7 392 aa8.83□□□□□ -1
HDAC1-204ENST00000471488 LRCH3Q96II8 777 aa8.83□□□□□ -1
HDAC1-204ENST00000471488 RNF208Q9H0X6 261 aa8.83□□□□□ -1
HDAC1-204ENST00000471488 TDRD3Q9H7E2 651 aaKnown RBP8.83□□□□□ -1
HDAC1-204ENST00000471488 TAOK2Q9UL54 1235 aa8.83□□□□□ -1
HDAC1-204ENST00000471488 SZT2Q5T011 3432 aa8.83□□□□□ -1
HDAC1-204ENST00000471488 AOX1Q06278 1338 aa8.82□□□□□ -1
HDAC1-204ENST00000471488 PI4KAP2A4QPH2 592 aa8.82□□□□□ -1
HDAC1-204ENST00000471488 EVI5O60447 810 aa8.82□□□□□ -1
HDAC1-204ENST00000471488 MMP14P50281 582 aa8.82□□□□□ -1
HDAC1-204ENST00000471488 CHRNDQ07001 517 aa8.82□□□□□ -1
HDAC1-204ENST00000471488 TNFAIP1Q13829 316 aa8.82□□□□□ -1
HDAC1-204ENST00000471488 CDAN1Q8IWY9 1227 aa8.82□□□□□ -1
HDAC1-204ENST00000471488 PI4KAP1Q8N8J0 262 aa8.82□□□□□ -1
HDAC1-204ENST00000471488 ZBED3Q96IU2 234 aaPredicted RBP8.82□□□□□ -1
HDAC1-204ENST00000471488 TMEM39BQ9GZU3 492 aa8.82□□□□□ -1
HDAC1-204ENST00000471488 CPA4Q9UI42 421 aa8.82□□□□□ -1
HDAC1-204ENST00000471488 TRIM35Q9UPQ4 493 aa8.82□□□□□ -1
HDAC1-204ENST00000471488 ZSWIM8A7E2V4 1837 aa8.82□□□□□ -1
HDAC1-204ENST00000471488 CCL5P13501 91 aa8.81□□□□□ -1
HDAC1-204ENST00000471488 GRK4P32298 578 aa8.81□□□□□ -1
HDAC1-204ENST00000471488 PSMC4P43686 418 aa8.81□□□□□ -1
HDAC1-204ENST00000471488 TNNI2P48788 182 aa8.81□□□□□ -1
HDAC1-204ENST00000471488 MAP3K9P80192 1104 aa8.81□□□□□ -1
HDAC1-204ENST00000471488 LACTBP83111 547 aaPredicted RBP8.81□□□□□ -1
HDAC1-204ENST00000471488 TAF7LQ5H9L4 462 aa8.81□□□□□ -1
HDAC1-204ENST00000471488 NKX2-3Q8TAU0 364 aa8.81□□□□□ -1
HDAC1-204ENST00000471488 RUNDC1Q96C34 613 aa8.81□□□□□ -1
HDAC1-204ENST00000471488 SHISA4Q96DD7 197 aa8.81□□□□□ -1
HDAC1-204ENST00000471488 MS4A4AQ96JQ5 239 aa8.81□□□□□ -1
HDAC1-204ENST00000471488 ZNF70Q9UC06 446 aaPredicted RBP8.81□□□□□ -1
HDAC1-204ENST00000471488 STAP2Q9UGK3 403 aa8.81□□□□□ -1
HDAC1-204ENST00000471488 TTF2Q9UNY4 1162 aaKnown RBP8.81□□□□□ -1
HDAC1-204ENST00000471488 CEP290O15078 2479 aa8.8□□□□□ -1
HDAC1-204ENST00000471488 ANKRD18BA2A2Z9 1011 aa8.8□□□□□ -1
HDAC1-204ENST00000471488 TESPA1A2RU30 521 aaPredicted RBP8.8□□□□□ -1
HDAC1-204ENST00000471488 UNCXA6NJT0 531 aa8.8□□□□□ -1
HDAC1-204ENST00000471488 BTBD19C9JJ37 291 aa8.8□□□□□ -1
HDAC1-204ENST00000471488 SOX1O00570 391 aaPredicted RBP8.8□□□□□ -1
HDAC1-204ENST00000471488 TLR2O60603 784 aa8.8□□□□□ -1
HDAC1-204ENST00000471488 FARP2O94887 1054 aaPredicted RBP8.8□□□□□ -1
HDAC1-204ENST00000471488 TFRCP02786 760 aaKnown RBP8.8□□□□□ -1
HDAC1-204ENST00000471488 CETPP11597 493 aa8.8□□□□□ -1
HDAC1-204ENST00000471488 CACNB3P54284 484 aa8.8□□□□□ -1
HDAC1-204ENST00000471488 UBXN2AP68543 259 aa8.8□□□□□ -1
HDAC1-204ENST00000471488 CCDC30Q5VVM6 783 aa8.8□□□□□ -1
HDAC1-204ENST00000471488 PPP1R3FQ6ZSY5 799 aaPredicted RBP8.8□□□□□ -1
HDAC1-204ENST00000471488 ZKSCAN4Q969J2 545 aaPredicted RBP8.8□□□□□ -1
HDAC1-204ENST00000471488 TRIM47Q96LD4 638 aa8.8□□□□□ -1
HDAC1-204ENST00000471488 WRNIP1Q96S55 665 aa8.8□□□□□ -1
HDAC1-204ENST00000471488 STK31Q9BXU1 1019 aa8.8□□□□□ -1
HDAC1-204ENST00000471488 RIPOR2Q9Y4F9 1068 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms