RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 GTF3C6Q969F1 213 aa21.57■■□□□ 1.04
CCDC88B-204ENST00000463837 STMN4Q9H169 189 aaPredicted RBP21.57■■□□□ 1.04
CCDC88B-204ENST00000463837 GNAT2P19087 354 aa21.57■■□□□ 1.04
CCDC88B-204ENST00000463837 PRPHP41219 470 aa21.57■■□□□ 1.04
CCDC88B-204ENST00000463837 KARSQ15046 597 aaKnown RBP21.57■■□□□ 1.04
CCDC88B-204ENST00000463837 ZNF569Q5MCW4 686 aa21.57■■□□□ 1.04
CCDC88B-204ENST00000463837 ABCC2Q92887 1545 aa21.57■■□□□ 1.04
CCDC88B-204ENST00000463837 COPS6Q7L5N1 327 aa21.57■■□□□ 1.04
CCDC88B-204ENST00000463837 CBX8Q9HC52 389 aa21.57■■□□□ 1.04
CCDC88B-204ENST00000463837 PA2G4Q9UQ80 394 aaKnown RBP21.57■■□□□ 1.04
CCDC88B-204ENST00000463837 NF2P35240 595 aa21.57■■□□□ 1.04
CCDC88B-204ENST00000463837 KIAA0753Q2KHM9 967 aa21.57■■□□□ 1.04
CCDC88B-204ENST00000463837 UTP14AQ9BVJ6 771 aaKnown RBP21.57■■□□□ 1.04
CCDC88B-204ENST00000463837 CRNKL1Q9BZJ0 848 aaKnown RBP21.57■■□□□ 1.04
CCDC88B-204ENST00000463837 RASSF4Q9H2L5 321 aa21.57■■□□□ 1.04
CCDC88B-204ENST00000463837 AKR1B15C9JRZ8 316 aaPredicted RBP21.56■■□□□ 1.04
CCDC88B-204ENST00000463837 PHACTR2O75167 634 aa21.56■■□□□ 1.04
CCDC88B-204ENST00000463837 U2AF2P26368 475 aaKnown RBP eCLIP21.56■■□□□ 1.04
CCDC88B-204ENST00000463837 PPP2R3AQ06190 1150 aa21.56■■□□□ 1.04
CCDC88B-204ENST00000463837 TRIM14Q14142 442 aa21.56■■□□□ 1.04
CCDC88B-204ENST00000463837 LMBR1LQ6UX01 489 aa21.56■■□□□ 1.04
CCDC88B-204ENST00000463837 C17orf53Q8N3J3 647 aaPredicted RBP21.56■■□□□ 1.04
CCDC88B-204ENST00000463837 PLVAPQ9BX97 442 aa21.56■■□□□ 1.04
CCDC88B-204ENST00000463837 ADAMTS12P58397 1594 aa21.56■■□□□ 1.04
CCDC88B-204ENST00000463837 IFIT1BQ5T764 474 aaKnown RBP21.56■■□□□ 1.04
CCDC88B-204ENST00000463837 HOOK3Q86VS8 718 aa21.56■■□□□ 1.04
CCDC88B-204ENST00000463837 TNRQ92752 1358 aa21.56■■□□□ 1.04
CCDC88B-204ENST00000463837 MICALL1Q8N3F8 863 aa21.56■■□□□ 1.04
CCDC88B-204ENST00000463837 DHX58Q96C10 678 aa21.56■■□□□ 1.04
CCDC88B-204ENST00000463837 TSGA10Q9BZW7 698 aa21.56■■□□□ 1.04
CCDC88B-204ENST00000463837 PUF60Q9UHX1 559 aaKnown RBP21.56■■□□□ 1.04
CCDC88B-204ENST00000463837 BAG3O95817 575 aa21.55■■□□□ 1.04
CCDC88B-204ENST00000463837 LMBR1Q8WVP7 490 aa21.55■■□□□ 1.04
CCDC88B-204ENST00000463837 CALML3P27482 149 aa21.55■■□□□ 1.04
CCDC88B-204ENST00000463837 RASAL2Q9UJF2 1139 aa21.55■■□□□ 1.04
CCDC88B-204ENST00000463837 DNAI2Q9GZS0 605 aa21.55■■□□□ 1.04
CCDC88B-204ENST00000463837 LZTFL1Q9NQ48 299 aa21.55■■□□□ 1.04
CCDC88B-204ENST00000463837 ATRIPQ8WXE1 791 aa21.55■■□□□ 1.04
CCDC88B-204ENST00000463837 SLC27A2O14975 620 aa21.54■■□□□ 1.04
CCDC88B-204ENST00000463837 HOXB7P09629 217 aa21.54■■□□□ 1.04
CCDC88B-204ENST00000463837 CCDC42Q96M95 316 aa21.54■■□□□ 1.04
CCDC88B-204ENST00000463837 TM6SF1Q9BZW5 370 aa21.54■■□□□ 1.04
CCDC88B-204ENST00000463837 TMEM63CQ9P1W3 806 aa21.54■■□□□ 1.04
CCDC88B-204ENST00000463837 CCDC129Q6ZRS4 1044 aa21.54■■□□□ 1.04
CCDC88B-204ENST00000463837 OTUD7AQ8TE49 926 aaPredicted RBP21.54■■□□□ 1.04
CCDC88B-204ENST00000463837 FSD2A1L4K1 749 aa21.54■■□□□ 1.04
CCDC88B-204ENST00000463837 A6NNZ2 444 aa21.54■■□□□ 1.04
CCDC88B-204ENST00000463837 TUBB8Q3ZCM7 444 aa21.54■■□□□ 1.04
CCDC88B-204ENST00000463837 KDM5DQ9BY66 1539 aa21.54■■□□□ 1.04
CCDC88B-204ENST00000463837 GPTP24298 496 aa21.54■■□□□ 1.04
CCDC88B-204ENST00000463837 TTF2Q9UNY4 1162 aaKnown RBP21.54■■□□□ 1.04
CCDC88B-204ENST00000463837 SPAG5Q96R06 1193 aa21.53■■□□□ 1.04
CCDC88B-204ENST00000463837 FAM76AQ8TAV0 307 aa21.53■■□□□ 1.04
CCDC88B-204ENST00000463837 LEO1Q8WVC0 666 aaPredicted RBP21.53■■□□□ 1.04
CCDC88B-204ENST00000463837 RHOXF2BP0C7M4 288 aa21.53■■□□□ 1.04
CCDC88B-204ENST00000463837 KRT2P35908 639 aa21.53■■□□□ 1.04
CCDC88B-204ENST00000463837 RHOXF2Q9BQY4 288 aa21.53■■□□□ 1.04
CCDC88B-204ENST00000463837 CPA1P15085 419 aa21.53■■□□□ 1.04
CCDC88B-204ENST00000463837 PPP1R2P41236 205 aa21.53■■□□□ 1.04
CCDC88B-204ENST00000463837 VAV2P52735 878 aa21.53■■□□□ 1.04
CCDC88B-204ENST00000463837 C10orf67Q8IYJ2 551 aa21.53■■□□□ 1.04
CCDC88B-204ENST00000463837 ANKS4BQ8N8V4 417 aa21.53■■□□□ 1.04
CCDC88B-204ENST00000463837 LUC7L2Q9Y383 392 aaKnown RBP21.53■■□□□ 1.04
CCDC88B-204ENST00000463837 SLC4A4Q9Y6R1 1079 aa21.53■■□□□ 1.04
CCDC88B-204ENST00000463837 C6orf229H3BNL8 230 aa21.52■■□□□ 1.04
CCDC88B-204ENST00000463837 CHL1O00533 1208 aa21.52■■□□□ 1.04
CCDC88B-204ENST00000463837 SLC9C2Q5TAH2 1124 aa21.52■■□□□ 1.04
CCDC88B-204ENST00000463837 UBXN1Q04323 297 aa21.52■■□□□ 1.04
CCDC88B-204ENST00000463837 NAA16Q6N069 864 aaPredicted RBP21.52■■□□□ 1.04
CCDC88B-204ENST00000463837 CCDC121Q6ZUS5 278 aa21.52■■□□□ 1.04
CCDC88B-204ENST00000463837 OTUD6BQ8N6M0 293 aa21.52■■□□□ 1.04
CCDC88B-204ENST00000463837 TBC1D5Q92609 795 aa21.52■■□□□ 1.04
CCDC88B-204ENST00000463837 TOM1O60784 492 aa21.52■■□□□ 1.03
CCDC88B-204ENST00000463837 KRT24Q2M2I5 525 aa21.52■■□□□ 1.03
CCDC88B-204ENST00000463837 IQUBQ8NA54 791 aa21.52■■□□□ 1.03
CCDC88B-204ENST00000463837 ERMNQ8TAM6 284 aa21.52■■□□□ 1.03
CCDC88B-204ENST00000463837 GUCA1BQ9UMX6 200 aa21.51■■□□□ 1.03
CCDC88B-204ENST00000463837 IL13P35225 146 aa21.51■■□□□ 1.03
CCDC88B-204ENST00000463837 PPP4R3AQ6IN85 833 aa21.51■■□□□ 1.03
CCDC88B-204ENST00000463837 A0A1B0GVL5 298 aa21.51■■□□□ 1.03
CCDC88B-204ENST00000463837 WDR7Q9Y4E6 1490 aa21.51■■□□□ 1.03
CCDC88B-204ENST00000463837 ABCC4O15439 1325 aa21.51■■□□□ 1.03
CCDC88B-204ENST00000463837 GSTO1P78417 241 aa21.51■■□□□ 1.03
CCDC88B-204ENST00000463837 TRMT2AQ8IZ69 625 aaKnown RBP21.51■■□□□ 1.03
CCDC88B-204ENST00000463837 CAPZA3Q96KX2 299 aa21.51■■□□□ 1.03
CCDC88B-204ENST00000463837 UHRF1BP1LA0JNW5 1464 aa21.5■■□□□ 1.03
CCDC88B-204ENST00000463837 PLXNC1O60486 1568 aa21.5■■□□□ 1.03
CCDC88B-204ENST00000463837 GADD45BO75293 160 aaPredicted RBP21.5■■□□□ 1.03
CCDC88B-204ENST00000463837 CHST3Q7LGC8 479 aa21.5■■□□□ 1.03
CCDC88B-204ENST00000463837 KIAA0232Q92628 1395 aa21.5■■□□□ 1.03
CCDC88B-204ENST00000463837 RILPL1Q5EBL4 403 aa21.5■■□□□ 1.03
CCDC88B-204ENST00000463837 VAT1LQ9HCJ6 419 aa21.5■■□□□ 1.03
CCDC88B-204ENST00000463837 A0A1B0GUL7 405 aa21.5■■□□□ 1.03
CCDC88B-204ENST00000463837 ASIC1P78348 528 aa21.5■■□□□ 1.03
CCDC88B-204ENST00000463837 FANCCQ00597 558 aa21.5■■□□□ 1.03
CCDC88B-204ENST00000463837 CCDC152Q4G0S7 254 aa21.5■■□□□ 1.03
CCDC88B-204ENST00000463837 C6orf163Q5TEZ5 329 aa21.5■■□□□ 1.03
CCDC88B-204ENST00000463837 ANO1Q5XXA6 986 aa21.5■■□□□ 1.03
CCDC88B-204ENST00000463837 EDC4Q6P2E9 1401 aaKnown RBP21.49■■□□□ 1.03
CCDC88B-204ENST00000463837 STX17P56962 302 aa21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms