RNA–Protein interactions for RNA: ENST00000439316.6

CLCNKA-203, Transcript of chloride voltage-gated channel Ka, humanhuman

TSL 2 BASIC

Gene CLCNKA, Length 1,997 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-203ENST00000439316 CHAF1AQ13111 956 aaPredicted RBP19.23■□□□□ 0.67
CLCNKA-203ENST00000439316 ATL3Q6DD88 541 aa19.23■□□□□ 0.67
CLCNKA-203ENST00000439316 CTAGE5O15320 804 aa19.23■□□□□ 0.67
CLCNKA-203ENST00000439316 SLFNL1Q499Z3 407 aa19.23■□□□□ 0.67
CLCNKA-203ENST00000439316 PTF1AQ7RTS3 328 aa19.23■□□□□ 0.67
CLCNKA-203ENST00000439316 NEUROD6Q96NK8 337 aa19.23■□□□□ 0.67
CLCNKA-203ENST00000439316 CCDC94Q9BW85 323 aaPredicted RBP19.23■□□□□ 0.67
CLCNKA-203ENST00000439316 CWC25Q9NXE8 425 aaPredicted RBP19.23■□□□□ 0.67
CLCNKA-203ENST00000439316 ZBTB1Q9Y2K1 713 aa19.23■□□□□ 0.67
CLCNKA-203ENST00000439316 MAST3O60307 1309 aa19.22■□□□□ 0.67
CLCNKA-203ENST00000439316 E7EWF7 191 aa19.22■□□□□ 0.67
CLCNKA-203ENST00000439316 HSPD1P10809 573 aaKnown RBP19.22■□□□□ 0.67
CLCNKA-203ENST00000439316 IQCB1Q15051 598 aa19.22■□□□□ 0.67
CLCNKA-203ENST00000439316 ZSCAN25Q6NSZ9 544 aa19.22■□□□□ 0.67
CLCNKA-203ENST00000439316 SARM1Q6SZW1 724 aa19.22■□□□□ 0.67
CLCNKA-203ENST00000439316 RIOK3O14730 519 aaKnown RBP19.21■□□□□ 0.67
CLCNKA-203ENST00000439316 LRMPQ12912 555 aa19.21■□□□□ 0.67
CLCNKA-203ENST00000439316 CCAR1Q8IX12 1150 aaKnown RBP19.21■□□□□ 0.67
CLCNKA-203ENST00000439316 DRC7Q8IY82 874 aa19.21■□□□□ 0.67
CLCNKA-203ENST00000439316 SEPT12Q8IYM1 358 aa19.21■□□□□ 0.67
CLCNKA-203ENST00000439316 SMARCC1Q92922 1105 aaPredicted RBP19.21■□□□□ 0.67
CLCNKA-203ENST00000439316 GOLPH3LQ9H4A5 285 aa19.21■□□□□ 0.67
CLCNKA-203ENST00000439316 BCL2L12Q9HB09 334 aa19.21■□□□□ 0.67
CLCNKA-203ENST00000439316 NRBP1Q9UHY1 535 aa19.21■□□□□ 0.67
CLCNKA-203ENST00000439316 EYA2O00167 538 aa19.21■□□□□ 0.67
CLCNKA-203ENST00000439316 RNF113AO15541 343 aaKnown RBP19.21■□□□□ 0.67
CLCNKA-203ENST00000439316 ZNF274Q96GC6 653 aaPredicted RBP19.21■□□□□ 0.67
CLCNKA-203ENST00000439316 ZNF396Q96N95 335 aaPredicted RBP19.21■□□□□ 0.67
CLCNKA-203ENST00000439316 A0A0G2JLW4 131 aa19.2■□□□□ 0.66
CLCNKA-203ENST00000439316 CIAO1O76071 339 aa19.2■□□□□ 0.66
CLCNKA-203ENST00000439316 TIMM10P62072 90 aa19.2■□□□□ 0.66
CLCNKA-203ENST00000439316 ITPK1Q13572 414 aa19.2■□□□□ 0.66
CLCNKA-203ENST00000439316 STX1AQ16623 288 aa19.2■□□□□ 0.66
CLCNKA-203ENST00000439316 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.2■□□□□ 0.66
CLCNKA-203ENST00000439316 USP28Q96RU2 1077 aa19.2■□□□□ 0.66
CLCNKA-203ENST00000439316 FTOQ9C0B1 505 aaKnown RBP eCLIP19.2■□□□□ 0.66
CLCNKA-203ENST00000439316 FOSBP53539 338 aa19.19■□□□□ 0.66
CLCNKA-203ENST00000439316 CEBPZQ03701 1054 aaKnown RBP19.19■□□□□ 0.66
CLCNKA-203ENST00000439316 SNW1Q13573 536 aaKnown RBP19.19■□□□□ 0.66
CLCNKA-203ENST00000439316 KIF6Q6ZMV9 814 aa19.19■□□□□ 0.66
CLCNKA-203ENST00000439316 C11orf57Q6ZUT1 292 aaPredicted RBP19.19■□□□□ 0.66
CLCNKA-203ENST00000439316 FBXL16Q8N461 479 aa19.19■□□□□ 0.66
CLCNKA-203ENST00000439316 CLIP2Q9UDT6 1046 aa19.19■□□□□ 0.66
CLCNKA-203ENST00000439316 MYH14Q7Z406 1995 aaKnown RBP19.19■□□□□ 0.66
CLCNKA-203ENST00000439316 CTIFO43310 598 aaKnown RBP19.19■□□□□ 0.66
CLCNKA-203ENST00000439316 IFIT1P09914 478 aaKnown RBP19.19■□□□□ 0.66
CLCNKA-203ENST00000439316 PDIA3P30101 505 aaKnown RBP19.19■□□□□ 0.66
CLCNKA-203ENST00000439316 CCT2P78371 535 aaKnown RBP19.19■□□□□ 0.66
CLCNKA-203ENST00000439316 CCDC73Q6ZRK6 1079 aa19.19■□□□□ 0.66
CLCNKA-203ENST00000439316 ENGASEQ8NFI3 743 aa19.19■□□□□ 0.66
CLCNKA-203ENST00000439316 CHMP4CQ96CF2 233 aa19.19■□□□□ 0.66
CLCNKA-203ENST00000439316 NCOA5Q9HCD5 579 aaKnown RBP19.19■□□□□ 0.66
CLCNKA-203ENST00000439316 BTAF1O14981 1849 aa19.18■□□□□ 0.66
CLCNKA-203ENST00000439316 LRRC24Q50LG9 513 aa19.18■□□□□ 0.66
CLCNKA-203ENST00000439316 ILDR1Q86SU0 546 aaPredicted RBP19.18■□□□□ 0.66
CLCNKA-203ENST00000439316 CCDC191Q8NCU4 936 aa19.18■□□□□ 0.66
CLCNKA-203ENST00000439316 CARMIL3Q8ND23 1372 aa19.18■□□□□ 0.66
CLCNKA-203ENST00000439316 A0A1B0GUL7 405 aa19.17■□□□□ 0.66
CLCNKA-203ENST00000439316 M0R2C6 588 aa19.17■□□□□ 0.66
CLCNKA-203ENST00000439316 IL6STP40189 918 aaPredicted RBP19.17■□□□□ 0.66
CLCNKA-203ENST00000439316 CRKLP46109 303 aaKnown RBP19.17■□□□□ 0.66
CLCNKA-203ENST00000439316 EVCP57679 992 aa19.17■□□□□ 0.66
CLCNKA-203ENST00000439316 FAM160A1Q05DH4 1040 aa19.17■□□□□ 0.66
CLCNKA-203ENST00000439316 CCDC144BQ3MJ40 725 aa19.17■□□□□ 0.66
CLCNKA-203ENST00000439316 INTS5Q6P9B9 1019 aaKnown RBP19.17■□□□□ 0.66
CLCNKA-203ENST00000439316 CCDC144CPQ8IYA2 1237 aa19.17■□□□□ 0.66
CLCNKA-203ENST00000439316 MRFAP1L1Q96HT8 127 aa19.17■□□□□ 0.66
CLCNKA-203ENST00000439316 SBF2Q86WG5 1849 aa19.17■□□□□ 0.66
CLCNKA-203ENST00000439316 DDX60Q8IY21 1712 aaKnown RBP19.17■□□□□ 0.66
CLCNKA-203ENST00000439316 FAM177BA6PVY3 158 aa19.17■□□□□ 0.66
CLCNKA-203ENST00000439316 GOLGA6L19H0YKK7 550 aa19.17■□□□□ 0.66
CLCNKA-203ENST00000439316 CACTINQ8WUQ7 758 aaKnown RBP19.17■□□□□ 0.66
CLCNKA-203ENST00000439316 NHSQ6T4R5 1651 aa19.16■□□□□ 0.66
CLCNKA-203ENST00000439316 MAP3K15Q6ZN16 1313 aa19.16■□□□□ 0.66
CLCNKA-203ENST00000439316 KINO60870 393 aaKnown RBP19.16■□□□□ 0.66
CLCNKA-203ENST00000439316 TCIRG1Q13488 830 aa19.16■□□□□ 0.66
CLCNKA-203ENST00000439316 ANKRD7Q92527 254 aa19.16■□□□□ 0.66
CLCNKA-203ENST00000439316 ARID3AQ99856 593 aa19.16■□□□□ 0.66
CLCNKA-203ENST00000439316 CCDC87Q9NVE4 849 aa19.16■□□□□ 0.66
CLCNKA-203ENST00000439316 CICQ96RK0 1608 aaPredicted RBP19.16■□□□□ 0.66
CLCNKA-203ENST00000439316 ZNF594Q96JF6 807 aaPredicted RBP19.15■□□□□ 0.66
CLCNKA-203ENST00000439316 FDPSP14324 419 aaKnown RBP19.15■□□□□ 0.66
CLCNKA-203ENST00000439316 KCNQ4P56696 695 aa19.15■□□□□ 0.66
CLCNKA-203ENST00000439316 HLFQ16534 295 aa19.15■□□□□ 0.66
CLCNKA-203ENST00000439316 SMAP1Q8IYB5 467 aaPredicted RBP19.15■□□□□ 0.66
CLCNKA-203ENST00000439316 FSIP1Q8NA03 581 aa19.15■□□□□ 0.66
CLCNKA-203ENST00000439316 OSBP2Q969R2 916 aa19.15■□□□□ 0.66
CLCNKA-203ENST00000439316 ISCA1Q9BUE6 129 aa19.15■□□□□ 0.66
CLCNKA-203ENST00000439316 ANO10Q9NW15 660 aa19.15■□□□□ 0.66
CLCNKA-203ENST00000439316 TBC1D2BQ9UPU7 963 aa19.15■□□□□ 0.66
CLCNKA-203ENST00000439316 EIF5P55010 431 aaKnown RBP19.14■□□□□ 0.65
CLCNKA-203ENST00000439316 TTLL5Q6EMB2 1281 aa19.14■□□□□ 0.65
CLCNKA-203ENST00000439316 DHX40Q8IX18 779 aaKnown RBP19.14■□□□□ 0.65
CLCNKA-203ENST00000439316 NUP98P52948 1817 aa19.14■□□□□ 0.65
CLCNKA-203ENST00000439316 SMTNL1A8MU46 457 aa19.13■□□□□ 0.65
CLCNKA-203ENST00000439316 GIGYF2Q6Y7W6 1299 aaKnown RBP19.13■□□□□ 0.65
CLCNKA-203ENST00000439316 CHST3Q7LGC8 479 aa19.13■□□□□ 0.65
CLCNKA-203ENST00000439316 DZIP3Q86Y13 1208 aaKnown RBP19.13■□□□□ 0.65
CLCNKA-203ENST00000439316 C16orf45Q96MC5 204 aaPredicted RBP19.13■□□□□ 0.65
CLCNKA-203ENST00000439316 PUS3Q9BZE2 481 aaKnown RBP19.13■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms