RNA–Protein interactions for RNA: ENST00000422991.1

COL7A1-202, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 597 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-202ENST00000422991 RASGRF1Q13972 1273 aa20.81■□□□□ 0.92
COL7A1-202ENST00000422991 TTC39AQ5SRH9 613 aa20.81■□□□□ 0.92
COL7A1-202ENST00000422991 C16orf71Q8IYS4 520 aaPredicted RBP20.81■□□□□ 0.92
COL7A1-202ENST00000422991 OTUD7AQ8TE49 926 aaPredicted RBP20.81■□□□□ 0.92
COL7A1-202ENST00000422991 PDS5AQ29RF7 1337 aaKnown RBP20.8■□□□□ 0.92
COL7A1-202ENST00000422991 USP17L3A6NCW0 530 aa20.8■□□□□ 0.92
COL7A1-202ENST00000422991 USP17L4A6NCW7 530 aa20.8■□□□□ 0.92
COL7A1-202ENST00000422991 FRAT2O75474 233 aaPredicted RBP20.8■□□□□ 0.92
COL7A1-202ENST00000422991 CIAPIN1Q6FI81 312 aa20.8■□□□□ 0.92
COL7A1-202ENST00000422991 USP17L1Q7RTZ2 530 aa20.8■□□□□ 0.92
COL7A1-202ENST00000422991 PSMD14O00487 310 aa20.79■□□□□ 0.92
COL7A1-202ENST00000422991 MCAMP43121 646 aa20.79■□□□□ 0.92
COL7A1-202ENST00000422991 GTF2IP78347 998 aa20.79■□□□□ 0.92
COL7A1-202ENST00000422991 SCARF1Q14162 830 aa20.79■□□□□ 0.92
COL7A1-202ENST00000422991 TNIP1Q15025 636 aa20.79■□□□□ 0.92
COL7A1-202ENST00000422991 DACT2Q5SW24 774 aa20.79■□□□□ 0.92
COL7A1-202ENST00000422991 STRIP1Q5VSL9 837 aa20.79■□□□□ 0.92
COL7A1-202ENST00000422991 NMRK2Q9NPI5 230 aa20.79■□□□□ 0.92
COL7A1-202ENST00000422991 DENND2AQ9ULE3 1009 aa20.79■□□□□ 0.92
COL7A1-202ENST00000422991 MX1P20591 662 aa20.78■□□□□ 0.92
COL7A1-202ENST00000422991 CHAF1AQ13111 956 aaPredicted RBP20.78■□□□□ 0.92
COL7A1-202ENST00000422991 TTLL5Q6EMB2 1281 aa20.78■□□□□ 0.92
COL7A1-202ENST00000422991 FBXW7Q969H0 707 aa20.78■□□□□ 0.92
COL7A1-202ENST00000422991 GPATCH3Q96I76 525 aa20.78■□□□□ 0.92
COL7A1-202ENST00000422991 ECHDC1Q9NTX5 307 aa20.78■□□□□ 0.92
COL7A1-202ENST00000422991 HMG20BQ9P0W2 317 aa20.78■□□□□ 0.92
COL7A1-202ENST00000422991 JAG2Q9Y219 1238 aa20.78■□□□□ 0.92
COL7A1-202ENST00000422991 DOCK2Q92608 1830 aa20.77■□□□□ 0.92
COL7A1-202ENST00000422991 VIL1P09327 827 aaKnown RBP20.77■□□□□ 0.92
COL7A1-202ENST00000422991 PI16Q6UXB8 463 aa20.77■□□□□ 0.92
COL7A1-202ENST00000422991 GPC2Q8N158 579 aa20.77■□□□□ 0.92
COL7A1-202ENST00000422991 SPATA5Q8NB90 893 aa20.77■□□□□ 0.92
COL7A1-202ENST00000422991 PPIL4Q8WUA2 492 aaKnown RBP eCLIP20.77■□□□□ 0.92
COL7A1-202ENST00000422991 WDR90Q96KV7 1748 aa20.77■□□□□ 0.92
COL7A1-202ENST00000422991 TTC41PQ6P2S7 1318 aa20.77■□□□□ 0.91
COL7A1-202ENST00000422991 GLTPD2A6NH11 291 aa20.76■□□□□ 0.91
COL7A1-202ENST00000422991 ATP5JP18859 108 aa20.76■□□□□ 0.91
COL7A1-202ENST00000422991 PDE4AP27815 886 aa20.76■□□□□ 0.91
COL7A1-202ENST00000422991 FKBP1AP62942 108 aaKnown RBP20.76■□□□□ 0.91
COL7A1-202ENST00000422991 TSHZ3Q63HK5 1081 aa20.76■□□□□ 0.91
COL7A1-202ENST00000422991 RSBN1LQ6PCB5 846 aaPredicted RBP20.76■□□□□ 0.91
COL7A1-202ENST00000422991 STAP2Q9UGK3 403 aa20.76■□□□□ 0.91
COL7A1-202ENST00000422991 GJA3Q9Y6H8 435 aa20.76■□□□□ 0.91
COL7A1-202ENST00000422991 MAST2Q6P0Q8 1798 aa20.76■□□□□ 0.91
COL7A1-202ENST00000422991 MYO5AQ9Y4I1 1855 aaKnown RBP20.75■□□□□ 0.91
COL7A1-202ENST00000422991 TOMM70O94826 608 aa20.75■□□□□ 0.91
COL7A1-202ENST00000422991 CERS5Q8N5B7 392 aa20.75■□□□□ 0.91
COL7A1-202ENST00000422991 WDR66Q8TBY9 1149 aa20.75■□□□□ 0.91
COL7A1-202ENST00000422991 TBC1D22AQ8WUA7 517 aa20.75■□□□□ 0.91
COL7A1-202ENST00000422991 MXD3Q9BW11 206 aa20.75■□□□□ 0.91
COL7A1-202ENST00000422991 MYO3BQ8WXR4 1341 aa20.75■□□□□ 0.91
COL7A1-202ENST00000422991 SALL1Q9NSC2 1324 aa20.75■□□□□ 0.91
COL7A1-202ENST00000422991 DDNO94850 711 aaPredicted RBP20.74■□□□□ 0.91
COL7A1-202ENST00000422991 PDE1AP54750 535 aa20.74■□□□□ 0.91
COL7A1-202ENST00000422991 MFSD14BQ5SR56 506 aa20.74■□□□□ 0.91
COL7A1-202ENST00000422991 DPY19L2Q6NUT2 758 aa20.74■□□□□ 0.91
COL7A1-202ENST00000422991 GMLQ99445 158 aa20.74■□□□□ 0.91
COL7A1-202ENST00000422991 SNRKQ9NRH2 765 aa20.74■□□□□ 0.91
COL7A1-202ENST00000422991 AOX1Q06278 1338 aa20.74■□□□□ 0.91
COL7A1-202ENST00000422991 RPS12P25398 132 aaKnown RBP20.73■□□□□ 0.91
COL7A1-202ENST00000422991 GMPSP49915 693 aaPredicted RBP20.73■□□□□ 0.91
COL7A1-202ENST00000422991 PLEKHM2Q8IWE5 1019 aa20.73■□□□□ 0.91
COL7A1-202ENST00000422991 AGBL3Q8NEM8 1001 aa20.73■□□□□ 0.91
COL7A1-202ENST00000422991 PI4K2BQ8TCG2 481 aa20.73■□□□□ 0.91
COL7A1-202ENST00000422991 RRAGCQ9HB90 399 aa20.73■□□□□ 0.91
COL7A1-202ENST00000422991 ZBTB12Q9Y330 459 aaPredicted RBP20.73■□□□□ 0.91
COL7A1-202ENST00000422991 SCN4AP35499 1836 aa20.73■□□□□ 0.91
COL7A1-202ENST00000422991 ERC2O15083 957 aa20.72■□□□□ 0.91
COL7A1-202ENST00000422991 ZAP70P43403 619 aa20.72■□□□□ 0.91
COL7A1-202ENST00000422991 L3MBTL3Q96JM7 780 aaPredicted RBP20.72■□□□□ 0.91
COL7A1-202ENST00000422991 HAUS7Q99871 368 aa20.72■□□□□ 0.91
COL7A1-202ENST00000422991 NDUFB9Q9Y6M9 179 aa20.72■□□□□ 0.91
COL7A1-202ENST00000422991 ADAMTSL1Q8N6G6 1762 aa20.72■□□□□ 0.91
COL7A1-202ENST00000422991 GLRX3O76003 335 aaKnown RBP20.71■□□□□ 0.91
COL7A1-202ENST00000422991 CYP2E1P05181 493 aaPredicted RBP20.71■□□□□ 0.91
COL7A1-202ENST00000422991 DPF2Q92785 391 aa20.71■□□□□ 0.91
COL7A1-202ENST00000422991 BOLA2Q9H3K6 86 aa20.71■□□□□ 0.91
COL7A1-202ENST00000422991 OSBPL3Q9H4L5 887 aa20.71■□□□□ 0.91
COL7A1-202ENST00000422991 GTF3C3Q9Y5Q9 886 aa20.71■□□□□ 0.91
COL7A1-202ENST00000422991 MYH7P12883 1935 aa20.7■□□□□ 0.91
COL7A1-202ENST00000422991 VEGFAP15692 232 aaPredicted RBP20.7■□□□□ 0.9
COL7A1-202ENST00000422991 SCNN1DP51172 638 aa20.7■□□□□ 0.9
COL7A1-202ENST00000422991 GRIK5Q16478 980 aa20.7■□□□□ 0.9
COL7A1-202ENST00000422991 ZGPATQ8N5A5 531 aaKnown RBP20.7■□□□□ 0.9
COL7A1-202ENST00000422991 RBM46Q8TBY0 533 aaKnown RBP20.7■□□□□ 0.9
COL7A1-202ENST00000422991 DNAJC2Q99543 621 aaKnown RBP20.7■□□□□ 0.9
COL7A1-202ENST00000422991 SUGT1Q9Y2Z0 365 aa20.7■□□□□ 0.9
COL7A1-202ENST00000422991 TBC1D9Q6ZT07 1266 aa20.69■□□□□ 0.9
COL7A1-202ENST00000422991 KIAA0825Q8IV33 1275 aa20.69■□□□□ 0.9
COL7A1-202ENST00000422991 PIH1D3Q9NQM4 214 aaKnown RBP20.69■□□□□ 0.9
COL7A1-202ENST00000422991 PRDX5P30044 214 aa20.68■□□□□ 0.9
COL7A1-202ENST00000422991 SKAP1Q86WV1 359 aa20.68■□□□□ 0.9
COL7A1-202ENST00000422991 ANTXR1Q9H6X2 564 aa20.68■□□□□ 0.9
COL7A1-202ENST00000422991 PAG1Q9NWQ8 432 aa20.68■□□□□ 0.9
COL7A1-202ENST00000422991 GPRC5DQ9NZD1 345 aa20.68■□□□□ 0.9
COL7A1-202ENST00000422991 AK9Q5TCS8 1911 aa20.68■□□□□ 0.9
COL7A1-202ENST00000422991 SHTN1A0MZ66 631 aa20.67■□□□□ 0.9
COL7A1-202ENST00000422991 GOLIM4O00461 696 aa20.67■□□□□ 0.9
COL7A1-202ENST00000422991 LDHBP07195 334 aaKnown RBP20.67■□□□□ 0.9
COL7A1-202ENST00000422991 HSPA6P17066 643 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms