RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 CEP57L1Q8IYX8 460 aa11.42□□□□□ -0.58
CD44-206ENST00000415148 CCDC112Q8NEF3 446 aa11.42□□□□□ -0.58
CD44-206ENST00000415148 OGFRQ9NZT2 677 aa11.42□□□□□ -0.58
CD44-206ENST00000415148 NUP188Q5SRE5 1749 aa11.42□□□□□ -0.58
CD44-206ENST00000415148 CARMIL3Q8ND23 1372 aa11.42□□□□□ -0.58
CD44-206ENST00000415148 TIMM10P62072 90 aa11.42□□□□□ -0.58
CD44-206ENST00000415148 ILDR1Q86SU0 546 aaPredicted RBP11.42□□□□□ -0.58
CD44-206ENST00000415148 FMR1NBQ8N0W7 255 aaPredicted RBP11.42□□□□□ -0.58
CD44-206ENST00000415148 NCOA5Q9HCD5 579 aaKnown RBP11.42□□□□□ -0.58
CD44-206ENST00000415148 IMPACTQ9P2X3 320 aa11.42□□□□□ -0.58
CD44-206ENST00000415148 DDX41Q9UJV9 622 aaKnown RBP11.42□□□□□ -0.58
CD44-206ENST00000415148 MAST3O60307 1309 aa11.42□□□□□ -0.58
CD44-206ENST00000415148 A0A0U1RQG5 324 aaPredicted RBP11.41□□□□□ -0.58
CD44-206ENST00000415148 NPHP1O15259 732 aa11.41□□□□□ -0.58
CD44-206ENST00000415148 YEATS4O95619 227 aa11.41□□□□□ -0.58
CD44-206ENST00000415148 CSB-PGBD3P0DP91 1061 aa11.41□□□□□ -0.58
CD44-206ENST00000415148 ME1P48163 572 aa11.41□□□□□ -0.58
CD44-206ENST00000415148 GSDMDP57764 484 aa11.41□□□□□ -0.58
CD44-206ENST00000415148 CCT2P78371 535 aaKnown RBP11.41□□□□□ -0.58
CD44-206ENST00000415148 NYAP1Q6ZVC0 841 aa11.41□□□□□ -0.58
CD44-206ENST00000415148 FSIP1Q8NA03 581 aa11.41□□□□□ -0.58
CD44-206ENST00000415148 KIF18AQ8NI77 898 aa11.41□□□□□ -0.58
CD44-206ENST00000415148 MRPS27Q92552 414 aaKnown RBP11.41□□□□□ -0.58
CD44-206ENST00000415148 WDR19Q8NEZ3 1342 aa11.41□□□□□ -0.58
CD44-206ENST00000415148 CCDC69A6NI79 296 aa11.41□□□□□ -0.58
CD44-206ENST00000415148 SKILP12757 684 aa11.41□□□□□ -0.58
CD44-206ENST00000415148 CHST3Q7LGC8 479 aa11.41□□□□□ -0.58
CD44-206ENST00000415148 KCNG4Q8TDN1 519 aa11.41□□□□□ -0.58
CD44-206ENST00000415148 PCDHA7Q9UN72 937 aa11.41□□□□□ -0.58
CD44-206ENST00000415148 AKAP2Q9Y2D5 859 aa11.41□□□□□ -0.58
CD44-206ENST00000415148 ABCC12Q96J65 1359 aa11.4□□□□□ -0.58
CD44-206ENST00000415148 TJP1Q07157 1748 aa11.4□□□□□ -0.58
CD44-206ENST00000415148 NBPF26B4DH59 902 aa11.4□□□□□ -0.58
CD44-206ENST00000415148 KIF2AO00139 706 aaPredicted RBP11.4□□□□□ -0.58
CD44-206ENST00000415148 SLFN14P0C7P3 912 aa11.4□□□□□ -0.58
CD44-206ENST00000415148 FDPSP14324 419 aaKnown RBP11.4□□□□□ -0.58
CD44-206ENST00000415148 NBPF14Q5TI25 921 aa11.4□□□□□ -0.58
CD44-206ENST00000415148 NBPF10Q6P3W6 841 aaKnown RBP11.4□□□□□ -0.58
CD44-206ENST00000415148 BRAPQ7Z569 592 aa11.4□□□□□ -0.58
CD44-206ENST00000415148 NBPF11Q86T75 865 aa11.4□□□□□ -0.58
CD44-206ENST00000415148 NBPF15Q8N660 670 aa11.4□□□□□ -0.58
CD44-206ENST00000415148 POLR3EQ9NVU0 708 aa11.4□□□□□ -0.58
CD44-206ENST00000415148 CGNQ9P2M7 1197 aaKnown RBP11.4□□□□□ -0.58
CD44-206ENST00000415148 A0A1B0GUL7 405 aa11.4□□□□□ -0.58
CD44-206ENST00000415148 ERVV-2B6SEH9 535 aa11.4□□□□□ -0.58
CD44-206ENST00000415148 ELF2Q15723 593 aa11.4□□□□□ -0.58
CD44-206ENST00000415148 IMMTQ16891 758 aaKnown RBP11.4□□□□□ -0.58
CD44-206ENST00000415148 CCDC158Q5M9N0 1113 aa11.4□□□□□ -0.58
CD44-206ENST00000415148 LINC00301Q8NCQ3 95 aa11.4□□□□□ -0.58
CD44-206ENST00000415148 OSBPL5Q9H0X9 879 aaPredicted RBP11.4□□□□□ -0.58
CD44-206ENST00000415148 UBR2Q8IWV8 1755 aa11.4□□□□□ -0.59
CD44-206ENST00000415148 KIF20AO95235 890 aa11.39□□□□□ -0.59
CD44-206ENST00000415148 PTPN14Q15678 1187 aa11.39□□□□□ -0.59
CD44-206ENST00000415148 OTUD7BQ6GQQ9 843 aa11.39□□□□□ -0.59
CD44-206ENST00000415148 FBXO38Q6PIJ6 1188 aa11.39□□□□□ -0.59
CD44-206ENST00000415148 AOPEPQ8N6M6 819 aa11.39□□□□□ -0.59
CD44-206ENST00000415148 GPHNQ9NQX3 736 aaPredicted RBP11.39□□□□□ -0.59
CD44-206ENST00000415148 KIAA1468Q9P260 1216 aa11.39□□□□□ -0.59
CD44-206ENST00000415148 CEP126Q9P2H0 1117 aa11.39□□□□□ -0.59
CD44-206ENST00000415148 CPDO75976 1380 aa11.39□□□□□ -0.59
CD44-206ENST00000415148 M0R2C6 588 aa11.39□□□□□ -0.59
CD44-206ENST00000415148 TUBB4AP04350 444 aa11.39□□□□□ -0.59
CD44-206ENST00000415148 LRRC24Q50LG9 513 aa11.39□□□□□ -0.59
CD44-206ENST00000415148 ZNF771Q7L3S4 317 aaPredicted RBP11.39□□□□□ -0.59
CD44-206ENST00000415148 FBXO18Q8NFZ0 1043 aa11.39□□□□□ -0.59
CD44-206ENST00000415148 SDF4Q9BRK5 362 aa11.39□□□□□ -0.59
CD44-206ENST00000415148 ZNF446Q9NWS9 450 aa11.39□□□□□ -0.59
CD44-206ENST00000415148 MORC2Q9Y6X9 1032 aaPredicted RBP11.39□□□□□ -0.59
CD44-206ENST00000415148 DCCP43146 1447 aa11.38□□□□□ -0.59
CD44-206ENST00000415148 ZBTB22O15209 634 aa11.38□□□□□ -0.59
CD44-206ENST00000415148 KCNJ6P48051 423 aa11.38□□□□□ -0.59
CD44-206ENST00000415148 CCAR2Q8N163 923 aaKnown RBP11.38□□□□□ -0.59
CD44-206ENST00000415148 OSBP2Q969R2 916 aa11.38□□□□□ -0.59
CD44-206ENST00000415148 C8orf76Q96K31 380 aa11.38□□□□□ -0.59
CD44-206ENST00000415148 TPM4P67936 248 aa11.38□□□□□ -0.59
CD44-206ENST00000415148 STK38Q15208 465 aa11.38□□□□□ -0.59
CD44-206ENST00000415148 SF3A1Q15459 793 aaKnown RBP11.38□□□□□ -0.59
CD44-206ENST00000415148 ZRSR1Q15695 479 aaKnown RBP11.38□□□□□ -0.59
CD44-206ENST00000415148 TTLL7Q6ZT98 887 aa11.38□□□□□ -0.59
CD44-206ENST00000415148 GJB4Q9NTQ9 266 aa11.38□□□□□ -0.59
CD44-206ENST00000415148 NAP1L2Q9ULW6 460 aaPredicted RBP11.38□□□□□ -0.59
CD44-206ENST00000415148 DDX60Q8IY21 1712 aaKnown RBP11.37□□□□□ -0.59
CD44-206ENST00000415148 A0A1B0GVL5 298 aa11.37□□□□□ -0.59
CD44-206ENST00000415148 SPTLC2O15270 562 aa11.37□□□□□ -0.59
CD44-206ENST00000415148 ATF3P18847 181 aa11.37□□□□□ -0.59
CD44-206ENST00000415148 PTPN21Q16825 1174 aa11.37□□□□□ -0.59
CD44-206ENST00000415148 TTC39AQ5SRH9 613 aa11.37□□□□□ -0.59
CD44-206ENST00000415148 MB21D2Q8IYB1 491 aaPredicted RBP11.37□□□□□ -0.59
CD44-206ENST00000415148 NCOA7Q8NI08 942 aa11.37□□□□□ -0.59
CD44-206ENST00000415148 TIGD1Q96MW7 591 aa11.37□□□□□ -0.59
CD44-206ENST00000415148 NEDD4P46934 1319 aa11.37□□□□□ -0.59
CD44-206ENST00000415148 PAPPAQ13219 1627 aa11.37□□□□□ -0.59
CD44-206ENST00000415148 NWD2Q9ULI1 1742 aa11.37□□□□□ -0.59
CD44-206ENST00000415148 CMA1P23946 247 aa11.36□□□□□ -0.59
CD44-206ENST00000415148 NDUFA8P51970 172 aa11.36□□□□□ -0.59
CD44-206ENST00000415148 NLRP12P59046 1061 aa11.36□□□□□ -0.59
CD44-206ENST00000415148 TRIM28Q13263 835 aaKnown RBP11.36□□□□□ -0.59
CD44-206ENST00000415148 NKX1-1Q15270 411 aaPredicted RBP11.36□□□□□ -0.59
CD44-206ENST00000415148 CCDC57Q2TAC2 916 aa11.36□□□□□ -0.59
CD44-206ENST00000415148 E4F1Q66K89 784 aaPredicted RBP11.36□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms