RNA–Protein interactions for RNA: ENST00000398022.6

TM9SF4-202, Transcript of transmembrane 9 superfamily member 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TM9SF4, Length 3,978 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF4-202ENST00000398022 CLASRPQ8N2M8 674 aaKnown RBP7.67□□□□□ -1.18
TM9SF4-202ENST00000398022 ALDH8A1Q9H2A2 487 aaPredicted RBP7.67□□□□□ -1.18
TM9SF4-202ENST00000398022 CWC15Q9P013 229 aaKnown RBP7.67□□□□□ -1.18
TM9SF4-202ENST00000398022 OFD1O75665 1012 aa7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 CCDC102AQ96A19 550 aa7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 AK7Q96M32 723 aa7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 PRAM1Q96QH2 718 aa7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 VEZTQ9HBM0 779 aa7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 VCAM1P19320 739 aa7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 IRX1P78414 480 aaPredicted RBP7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 FAM160A1Q05DH4 1040 aa7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 TRAF1Q13077 416 aa7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 RABEP1Q15276 862 aa7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 GOLGA6L1Q8N7Z2 621 aa7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 POM121Q96HA1 1249 aa7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 RMDN2Q96LZ7 410 aa7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 CEP89Q96ST8 783 aa7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 IFT57Q9NWB7 429 aa7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 NHSQ6T4R5 1651 aa7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 SESN3P58005 492 aa7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 NUCB2P80303 420 aa7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 GABPB1Q06547 395 aaPredicted RBP7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 SYAP1Q96A49 352 aaPredicted RBP7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 CHMP3Q9Y3E7 222 aa7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.66□□□□□ -1.18
TM9SF4-202ENST00000398022 INHBEP58166 350 aa7.65□□□□□ -1.18
TM9SF4-202ENST00000398022 DHX8Q14562 1220 aaKnown RBP7.65□□□□□ -1.18
TM9SF4-202ENST00000398022 INF2Q27J81 1249 aa7.65□□□□□ -1.18
TM9SF4-202ENST00000398022 WWC2Q6AWC2 1192 aa7.65□□□□□ -1.18
TM9SF4-202ENST00000398022 RSPH14Q9UHP6 348 aa7.65□□□□□ -1.18
TM9SF4-202ENST00000398022 PTK7Q13308 1070 aa7.65□□□□□ -1.18
TM9SF4-202ENST00000398022 TBC1D9Q6ZT07 1266 aa7.65□□□□□ -1.18
TM9SF4-202ENST00000398022 UHMK1Q8TAS1 419 aaKnown RBP7.65□□□□□ -1.18
TM9SF4-202ENST00000398022 EPAS1Q99814 870 aa7.65□□□□□ -1.18
TM9SF4-202ENST00000398022 IKBKGQ9Y6K9 419 aa7.65□□□□□ -1.18
TM9SF4-202ENST00000398022 COL3A1P02461 1466 aaPredicted RBP7.65□□□□□ -1.19
TM9SF4-202ENST00000398022 ZBTB7BO15156 539 aaPredicted RBP7.65□□□□□ -1.19
TM9SF4-202ENST00000398022 ATF3P18847 181 aa7.65□□□□□ -1.19
TM9SF4-202ENST00000398022 CCDC173Q0VFZ6 552 aa7.65□□□□□ -1.19
TM9SF4-202ENST00000398022 FXNQ16595 210 aa7.65□□□□□ -1.19
TM9SF4-202ENST00000398022 FILIP1LQ4L180 1135 aa7.65□□□□□ -1.19
TM9SF4-202ENST00000398022 FMNL3Q8IVF7 1028 aa7.65□□□□□ -1.19
TM9SF4-202ENST00000398022 SPOCK2Q92563 424 aa7.65□□□□□ -1.19
TM9SF4-202ENST00000398022 CDK19Q9BWU1 502 aa7.65□□□□□ -1.19
TM9SF4-202ENST00000398022 ZNF652Q9Y2D9 606 aa7.65□□□□□ -1.19
TM9SF4-202ENST00000398022 TRIM37O94972 964 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 ATP6V1AP38606 617 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 USP5P45974 858 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 TTC39BQ5VTQ0 682 aaPredicted RBP7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 SDE2Q6IQ49 451 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 ARHGEF25Q86VW2 580 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 VMP1Q96GC9 406 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 SSH2Q76I76 1423 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 LY75O60449 1722 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 DDIT3P35638 169 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 TMED1Q13445 227 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 TWISTNBQ3B726 338 aaPredicted RBP7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 MRPL50Q8N5N7 158 aaKnown RBP7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 NEK9Q8TD19 979 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 CABP1Q9NZU7 370 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 PPIP5K1Q6PFW1 1433 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 ST18O60284 1047 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 VAMP4O75379 141 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 CCDC159P0C7I6 412 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 ZNF131P52739 623 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 DCTN1Q14203 1278 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 AP1ARQ63HQ0 302 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 INTS3Q68E01 1043 aaKnown RBP7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 WAPLQ7Z5K2 1190 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 NDUFAF2Q8N183 169 aa7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 SMARCC1Q92922 1105 aaPredicted RBP7.64□□□□□ -1.19
TM9SF4-202ENST00000398022 NASPP49321 788 aaPredicted RBP7.63□□□□□ -1.19
TM9SF4-202ENST00000398022 HDGFP51858 240 aaKnown RBP7.63□□□□□ -1.19
TM9SF4-202ENST00000398022 TRIM29Q14134 588 aa7.63□□□□□ -1.19
TM9SF4-202ENST00000398022 PLEKHG6Q3KR16 790 aa7.63□□□□□ -1.19
TM9SF4-202ENST00000398022 GOLGA1Q92805 767 aa7.63□□□□□ -1.19
TM9SF4-202ENST00000398022 IP6K2Q9UHH9 426 aa7.63□□□□□ -1.19
TM9SF4-202ENST00000398022 BLOC1S6Q9UL45 172 aa7.63□□□□□ -1.19
TM9SF4-202ENST00000398022 LTN1O94822 1766 aa7.63□□□□□ -1.19
TM9SF4-202ENST00000398022 CD248Q9HCU0 757 aa7.63□□□□□ -1.19
TM9SF4-202ENST00000398022 FAM208AQ9UK61 1670 aaKnown RBP7.63□□□□□ -1.19
TM9SF4-202ENST00000398022 HMOX1P09601 288 aa7.63□□□□□ -1.19
TM9SF4-202ENST00000398022 GSCP56915 257 aaPredicted RBP7.63□□□□□ -1.19
TM9SF4-202ENST00000398022 PRPF4BQ13523 1007 aaKnown RBP7.63□□□□□ -1.19
TM9SF4-202ENST00000398022 KLHL40Q2TBA0 621 aa7.63□□□□□ -1.19
TM9SF4-202ENST00000398022 KRT77Q7Z794 578 aa7.63□□□□□ -1.19
TM9SF4-202ENST00000398022 DDX27Q96GQ7 796 aaKnown RBP7.63□□□□□ -1.19
TM9SF4-202ENST00000398022 IWS1Q96ST2 819 aa7.63□□□□□ -1.19
TM9SF4-202ENST00000398022 PRR36Q9H6K5 1346 aa7.63□□□□□ -1.19
TM9SF4-202ENST00000398022 ELL2O00472 640 aaPredicted RBP7.62□□□□□ -1.19
TM9SF4-202ENST00000398022 MEX3CQ5U5Q3 659 aaKnown RBP7.62□□□□□ -1.19
TM9SF4-202ENST00000398022 TRIML1Q8N9V2 468 aa7.62□□□□□ -1.19
TM9SF4-202ENST00000398022 CENPTQ96BT3 561 aa7.62□□□□□ -1.19
TM9SF4-202ENST00000398022 GJD4Q96KN9 370 aaPredicted RBP7.62□□□□□ -1.19
TM9SF4-202ENST00000398022 NFAT5O94916 1531 aa7.62□□□□□ -1.19
TM9SF4-202ENST00000398022 KIF24Q5T7B8 1368 aa7.62□□□□□ -1.19
TM9SF4-202ENST00000398022 ANKRD26Q9UPS8 1709 aa7.62□□□□□ -1.19
TM9SF4-202ENST00000398022 REC8O95072 547 aa7.62□□□□□ -1.19
TM9SF4-202ENST00000398022 SLC7A5Q01650 507 aa7.62□□□□□ -1.19
TM9SF4-202ENST00000398022 RELL1Q8IUW5 271 aa7.62□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms