RNA–Protein interactions for RNA: ENST00000380393.7

PTPRA-204, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

TSL 1 (best) BASIC

Gene PTPRA, Length 3,636 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-204ENST00000380393 PLEKHG4BQ96PX9 1271 aa10.75□□□□□ -0.69
PTPRA-204ENST00000380393 CHMP3Q9Y3E7 222 aa10.75□□□□□ -0.69
PTPRA-204ENST00000380393 USP16Q9Y5T5 823 aa10.75□□□□□ -0.69
PTPRA-204ENST00000380393 TULP4Q9NRJ4 1543 aa10.75□□□□□ -0.69
PTPRA-204ENST00000380393 ARHGEF28Q8N1W1 1705 aaKnown RBP10.74□□□□□ -0.69
PTPRA-204ENST00000380393 ABCC11Q96J66 1382 aa10.74□□□□□ -0.69
PTPRA-204ENST00000380393 EZRP15311 586 aaKnown RBP10.74□□□□□ -0.69
PTPRA-204ENST00000380393 THEMIS2Q5TEJ8 643 aa10.74□□□□□ -0.69
PTPRA-204ENST00000380393 CCDC181Q5TID7 509 aa10.74□□□□□ -0.69
PTPRA-204ENST00000380393 HDXQ7Z353 690 aa10.74□□□□□ -0.69
PTPRA-204ENST00000380393 CEP112Q8N8E3 955 aa10.74□□□□□ -0.69
PTPRA-204ENST00000380393 NUP133Q8WUM0 1156 aa10.74□□□□□ -0.69
PTPRA-204ENST00000380393 YIPF2Q9BWQ6 316 aa10.74□□□□□ -0.69
PTPRA-204ENST00000380393 PHF8Q9UPP1 1060 aa10.74□□□□□ -0.69
PTPRA-204ENST00000380393 CDC25BP30305 580 aa10.74□□□□□ -0.69
PTPRA-204ENST00000380393 CKAP2LQ8IYA6 745 aa10.74□□□□□ -0.69
PTPRA-204ENST00000380393 SLIT1O75093 1534 aa10.74□□□□□ -0.69
PTPRA-204ENST00000380393 CCDC151A5D8V7 595 aa10.73□□□□□ -0.69
PTPRA-204ENST00000380393 ETF1P62495 437 aaKnown RBP10.73□□□□□ -0.69
PTPRA-204ENST00000380393 CDCA2Q69YH5 1023 aaPredicted RBP10.73□□□□□ -0.69
PTPRA-204ENST00000380393 ARL10Q8N8L6 244 aa10.73□□□□□ -0.69
PTPRA-204ENST00000380393 TDRD7Q8NHU6 1098 aaKnown RBP10.73□□□□□ -0.69
PTPRA-204ENST00000380393 FAM71BQ8TC56 605 aa10.73□□□□□ -0.69
PTPRA-204ENST00000380393 TBC1D5Q92609 795 aa10.73□□□□□ -0.69
PTPRA-204ENST00000380393 MMTAG2Q9BU76 263 aaKnown RBP10.73□□□□□ -0.69
PTPRA-204ENST00000380393 TSPYL2Q9H2G4 693 aaPredicted RBP10.73□□□□□ -0.69
PTPRA-204ENST00000380393 RTN3O95197 1032 aaPredicted RBP10.73□□□□□ -0.69
PTPRA-204ENST00000380393 RPSAP08865 295 aaKnown RBP10.73□□□□□ -0.69
PTPRA-204ENST00000380393 TRIM42Q8IWZ5 723 aa10.73□□□□□ -0.69
PTPRA-204ENST00000380393 RBM12BQ8IXT5 1001 aaKnown RBP10.73□□□□□ -0.69
PTPRA-204ENST00000380393 BICD2Q8TD16 824 aa10.73□□□□□ -0.69
PTPRA-204ENST00000380393 TSGA10Q9BZW7 698 aa10.73□□□□□ -0.69
PTPRA-204ENST00000380393 NUP62CLQ9H1M0 184 aa10.73□□□□□ -0.69
PTPRA-204ENST00000380393 NSD3Q9BZ95 1437 aa10.73□□□□□ -0.69
PTPRA-204ENST00000380393 WASLO00401 505 aaPredicted RBP10.73□□□□□ -0.69
PTPRA-204ENST00000380393 ZSCAN9O15535 394 aaPredicted RBP10.73□□□□□ -0.69
PTPRA-204ENST00000380393 FMNL1O95466 1100 aaPredicted RBP10.73□□□□□ -0.69
PTPRA-204ENST00000380393 ZNF165P49910 485 aa10.73□□□□□ -0.69
PTPRA-204ENST00000380393 E4F1Q66K89 784 aaPredicted RBP10.73□□□□□ -0.69
PTPRA-204ENST00000380393 LMBR1Q8WVP7 490 aa10.73□□□□□ -0.69
PTPRA-204ENST00000380393 ZRANB1Q9UGI0 708 aa10.73□□□□□ -0.69
PTPRA-204ENST00000380393 PRR36Q9H6K5 1346 aa10.73□□□□□ -0.69
PTPRA-204ENST00000380393 TUBB4AP04350 444 aa10.72□□□□□ -0.69
PTPRA-204ENST00000380393 RANBP17Q9H2T7 1088 aaKnown RBP10.72□□□□□ -0.69
PTPRA-204ENST00000380393 SETD1AO15047 1707 aaKnown RBP10.72□□□□□ -0.69
PTPRA-204ENST00000380393 GOLGA6L19H0YKK7 550 aa10.72□□□□□ -0.69
PTPRA-204ENST00000380393 DBN1Q16643 649 aa10.72□□□□□ -0.69
PTPRA-204ENST00000380393 INTS3Q68E01 1043 aaKnown RBP10.72□□□□□ -0.69
PTPRA-204ENST00000380393 RCSD1Q6JBY9 416 aa10.72□□□□□ -0.69
PTPRA-204ENST00000380393 AFAP1L1Q8TED9 768 aa10.72□□□□□ -0.69
PTPRA-204ENST00000380393 BICD1Q96G01 975 aa10.72□□□□□ -0.69
PTPRA-204ENST00000380393 GGNBP2Q9H3C7 697 aa10.72□□□□□ -0.69
PTPRA-204ENST00000380393 KCND1Q9NSA2 647 aa10.72□□□□□ -0.69
PTPRA-204ENST00000380393 TTC41PQ6P2S7 1318 aa10.72□□□□□ -0.69
PTPRA-204ENST00000380393 TMPOP42166 694 aaKnown RBP10.72□□□□□ -0.69
PTPRA-204ENST00000380393 PDIA5Q14554 519 aa10.72□□□□□ -0.69
PTPRA-204ENST00000380393 BRD3Q15059 726 aa10.72□□□□□ -0.69
PTPRA-204ENST00000380393 CCDC178Q5BJE1 867 aa10.72□□□□□ -0.69
PTPRA-204ENST00000380393 AMOTL1Q8IY63 956 aa10.72□□□□□ -0.69
PTPRA-204ENST00000380393 NUDT16Q96DE0 195 aaKnown RBP10.72□□□□□ -0.69
PTPRA-204ENST00000380393 INTS4Q96HW7 963 aaKnown RBP10.72□□□□□ -0.69
PTPRA-204ENST00000380393 KLC4Q9NSK0 619 aa10.72□□□□□ -0.69
PTPRA-204ENST00000380393 DDX20Q9UHI6 824 aaKnown RBP10.72□□□□□ -0.69
PTPRA-204ENST00000380393 PHLPP2Q6ZVD8 1323 aa10.72□□□□□ -0.69
PTPRA-204ENST00000380393 KIAA0754O94854 1291 aa10.71□□□□□ -0.69
PTPRA-204ENST00000380393 CUL4AQ13619 759 aa10.71□□□□□ -0.69
PTPRA-204ENST00000380393 LZTS2Q9BRK4 669 aa10.71□□□□□ -0.69
PTPRA-204ENST00000380393 HOMER3Q9NSC5 361 aa10.71□□□□□ -0.69
PTPRA-204ENST00000380393 POLR3AO14802 1390 aaPredicted RBP10.71□□□□□ -0.69
PTPRA-204ENST00000380393 RABGGTAQ92696 567 aa10.71□□□□□ -0.69
PTPRA-204ENST00000380393 MIS18AQ9NYP9 233 aa10.71□□□□□ -0.69
PTPRA-204ENST00000380393 RPAP1Q9BWH6 1393 aaPredicted RBP10.71□□□□□ -0.7
PTPRA-204ENST00000380393 PPP1R12BO60237 982 aaPredicted RBP10.71□□□□□ -0.7
PTPRA-204ENST00000380393 CDR1P51861 262 aa10.71□□□□□ -0.7
PTPRA-204ENST00000380393 SLC8A3P57103 927 aa10.71□□□□□ -0.7
PTPRA-204ENST00000380393 E2F5Q15329 346 aa10.71□□□□□ -0.7
PTPRA-204ENST00000380393 VPS53Q5VIR6 699 aa10.71□□□□□ -0.7
PTPRA-204ENST00000380393 KIAA0825Q8IV33 1275 aa10.71□□□□□ -0.7
PTPRA-204ENST00000380393 OTUD7AQ8TE49 926 aaPredicted RBP10.71□□□□□ -0.7
PTPRA-204ENST00000380393 GCC1Q96CN9 775 aa10.71□□□□□ -0.7
PTPRA-204ENST00000380393 RABEP2Q9H5N1 569 aa10.71□□□□□ -0.7
PTPRA-204ENST00000380393 MED14O60244 1454 aa10.71□□□□□ -0.7
PTPRA-204ENST00000380393 DTNBO60941 627 aa10.7□□□□□ -0.7
PTPRA-204ENST00000380393 GSPT1P15170 499 aaKnown RBP10.7□□□□□ -0.7
PTPRA-204ENST00000380393 PPP2R3AQ06190 1150 aa10.7□□□□□ -0.7
PTPRA-204ENST00000380393 RSRC1Q96IZ7 334 aaKnown RBP10.7□□□□□ -0.7
PTPRA-204ENST00000380393 DNAJC25Q9H1X3 360 aa10.7□□□□□ -0.7
PTPRA-204ENST00000380393 TNMDQ9H2S6 317 aa10.7□□□□□ -0.7
PTPRA-204ENST00000380393 ATAD2Q6PL18 1390 aa10.7□□□□□ -0.7
PTPRA-204ENST00000380393 NPHP4O75161 1426 aaPredicted RBP10.7□□□□□ -0.7
PTPRA-204ENST00000380393 SHTN1A0MZ66 631 aa10.7□□□□□ -0.7
PTPRA-204ENST00000380393 PSDA5PKW4 1024 aaPredicted RBP10.7□□□□□ -0.7
PTPRA-204ENST00000380393 MYL1P05976 194 aa10.7□□□□□ -0.7
PTPRA-204ENST00000380393 FNTAP49354 379 aa10.7□□□□□ -0.7
PTPRA-204ENST00000380393 MAP3K9P80192 1104 aa10.7□□□□□ -0.7
PTPRA-204ENST00000380393 FILIP1LQ4L180 1135 aa10.7□□□□□ -0.7
PTPRA-204ENST00000380393 UTP14AQ9BVJ6 771 aaKnown RBP10.7□□□□□ -0.7
PTPRA-204ENST00000380393 YIPF3Q9GZM5 350 aa10.7□□□□□ -0.7
PTPRA-204ENST00000380393 IQCGQ9H095 443 aaKnown RBP10.7□□□□□ -0.7
PTPRA-204ENST00000380393 RRP12Q5JTH9 1297 aaKnown RBP10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms