RNA–Protein interactions for RNA: ENST00000380324.7

USP3-202, Transcript of ubiquitin specific peptidase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP3, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-202ENST00000380324 CCDC24Q8N4L8 307 aa14.24□□□□□ -0.13
USP3-202ENST00000380324 PANK2Q9BZ23 570 aa14.24□□□□□ -0.13
USP3-202ENST00000380324 ZNF532Q9HCE3 1301 aa14.24□□□□□ -0.13
USP3-202ENST00000380324 RPS6KA4O75676 772 aa14.24□□□□□ -0.13
USP3-202ENST00000380324 XRCC6P12956 609 aaKnown RBP eCLIP14.24□□□□□ -0.13
USP3-202ENST00000380324 BCAMP50895 628 aa14.24□□□□□ -0.13
USP3-202ENST00000380324 ZSCAN25Q6NSZ9 544 aa14.24□□□□□ -0.13
USP3-202ENST00000380324 DHX32Q7L7V1 743 aaKnown RBP14.24□□□□□ -0.13
USP3-202ENST00000380324 GTF3C6Q969F1 213 aa14.24□□□□□ -0.13
USP3-202ENST00000380324 NARFQ9UHQ1 456 aa14.24□□□□□ -0.13
USP3-202ENST00000380324 MTMR6Q9Y217 621 aa14.24□□□□□ -0.13
USP3-202ENST00000380324 CNPY2Q9Y2B0 182 aa14.24□□□□□ -0.13
USP3-202ENST00000380324 RTCBQ9Y3I0 505 aaKnown RBP14.24□□□□□ -0.13
USP3-202ENST00000380324 ATRNO75882 1429 aa14.23□□□□□ -0.13
USP3-202ENST00000380324 FGAP02671 866 aa14.23□□□□□ -0.13
USP3-202ENST00000380324 PDE6AP16499 860 aa14.23□□□□□ -0.13
USP3-202ENST00000380324 IMMTQ16891 758 aaKnown RBP14.23□□□□□ -0.13
USP3-202ENST00000380324 NAP1L2Q9ULW6 460 aaPredicted RBP14.23□□□□□ -0.13
USP3-202ENST00000380324 IQSEC3Q9UPP2 1182 aaPredicted RBP14.23□□□□□ -0.13
USP3-202ENST00000380324 JAK2O60674 1132 aa14.23□□□□□ -0.13
USP3-202ENST00000380324 ZSCAN23Q3MJ62 389 aa14.23□□□□□ -0.13
USP3-202ENST00000380324 LARP1BQ659C4 914 aaKnown RBP14.23□□□□□ -0.13
USP3-202ENST00000380324 CDC37L1Q7L3B6 337 aa14.23□□□□□ -0.13
USP3-202ENST00000380324 NBPF5PQ86XG9 351 aaPredicted RBP14.23□□□□□ -0.13
USP3-202ENST00000380324 ANKRD18AQ8IVF6 992 aa14.23□□□□□ -0.13
USP3-202ENST00000380324 SETDB2Q96T68 719 aa14.23□□□□□ -0.13
USP3-202ENST00000380324 GRPEL1Q9HAV7 217 aa14.23□□□□□ -0.13
USP3-202ENST00000380324 FIBPO43427 364 aa14.22□□□□□ -0.13
USP3-202ENST00000380324 APOBRQ0VD83 1088 aa14.22□□□□□ -0.13
USP3-202ENST00000380324 RC3H1Q5TC82 1133 aaKnown RBP14.22□□□□□ -0.13
USP3-202ENST00000380324 SEPT12Q8IYM1 358 aa14.22□□□□□ -0.13
USP3-202ENST00000380324 CTNNA3Q9UI47 895 aa14.22□□□□□ -0.13
USP3-202ENST00000380324 APPP05067 770 aa14.21□□□□□ -0.13
USP3-202ENST00000380324 FERMT3Q86UX7 667 aa14.21□□□□□ -0.13
USP3-202ENST00000380324 MAGEB6Q8N7X4 407 aa14.21□□□□□ -0.13
USP3-202ENST00000380324 WTIPA6NIX2 430 aaPredicted RBP14.21□□□□□ -0.13
USP3-202ENST00000380324 NPHP1O15259 732 aa14.21□□□□□ -0.13
USP3-202ENST00000380324 GADD45BO75293 160 aaPredicted RBP14.21□□□□□ -0.13
USP3-202ENST00000380324 MRE11P49959 708 aa14.21□□□□□ -0.13
USP3-202ENST00000380324 SCRN1Q12765 414 aa14.21□□□□□ -0.13
USP3-202ENST00000380324 UBE3CQ15386 1083 aa14.21□□□□□ -0.13
USP3-202ENST00000380324 USP48Q86UV5 1035 aa14.21□□□□□ -0.13
USP3-202ENST00000380324 CELF1Q92879 486 aaKnown RBP14.21□□□□□ -0.13
USP3-202ENST00000380324 TMEM63CQ9P1W3 806 aa14.21□□□□□ -0.13
USP3-202ENST00000380324 MBD3O95983 291 aa14.2□□□□□ -0.14
USP3-202ENST00000380324 SF3B3Q15393 1217 aaKnown RBP14.2□□□□□ -0.14
USP3-202ENST00000380324 ARHGEF1Q92888 912 aaKnown RBP14.2□□□□□ -0.14
USP3-202ENST00000380324 AIDAQ96BJ3 306 aa14.2□□□□□ -0.14
USP3-202ENST00000380324 DDX11Q96FC9 970 aa14.2□□□□□ -0.14
USP3-202ENST00000380324 TRPC5Q9UL62 973 aaPredicted RBP14.2□□□□□ -0.14
USP3-202ENST00000380324 ATP6V1DQ9Y5K8 247 aa14.2□□□□□ -0.14
USP3-202ENST00000380324 CHD4Q14839 1912 aa14.2□□□□□ -0.14
USP3-202ENST00000380324 TCRBV5S4A2TA0A5A2 114 aa14.2□□□□□ -0.14
USP3-202ENST00000380324 EXOSC10Q01780 885 aaKnown RBP14.2□□□□□ -0.14
USP3-202ENST00000380324 DNM1Q05193 864 aaKnown RBP14.2□□□□□ -0.14
USP3-202ENST00000380324 MAP3K12Q12852 859 aa14.2□□□□□ -0.14
USP3-202ENST00000380324 NYXQ9GZU5 481 aa14.2□□□□□ -0.14
USP3-202ENST00000380324 TNRC6CQ9HCJ0 1690 aaKnown RBP14.19□□□□□ -0.14
USP3-202ENST00000380324 ZNF213O14771 459 aa14.19□□□□□ -0.14
USP3-202ENST00000380324 PPFIA3O75145 1194 aa14.19□□□□□ -0.14
USP3-202ENST00000380324 PDCP20941 246 aa14.19□□□□□ -0.14
USP3-202ENST00000380324 GYG1P46976 350 aa14.19□□□□□ -0.14
USP3-202ENST00000380324 CCT2P78371 535 aaKnown RBP14.19□□□□□ -0.14
USP3-202ENST00000380324 GPHNQ9NQX3 736 aaPredicted RBP14.19□□□□□ -0.14
USP3-202ENST00000380324 ISY1Q9ULR0 285 aaKnown RBP14.19□□□□□ -0.14
USP3-202ENST00000380324 MYH13Q9UKX3 1938 aa14.19□□□□□ -0.14
USP3-202ENST00000380324 RFC4P35249 363 aa14.19□□□□□ -0.14
USP3-202ENST00000380324 RALYLQ86SE5 291 aaKnown RBP14.19□□□□□ -0.14
USP3-202ENST00000380324 NCOA5Q9HCD5 579 aaKnown RBP14.19□□□□□ -0.14
USP3-202ENST00000380324 MBD4O95243 580 aa14.18□□□□□ -0.14
USP3-202ENST00000380324 FAM196AQ6ZSG2 479 aa14.18□□□□□ -0.14
USP3-202ENST00000380324 BSDC1Q9NW68 430 aaPredicted RBP14.18□□□□□ -0.14
USP3-202ENST00000380324 SYCE3A1L190 88 aa14.18□□□□□ -0.14
USP3-202ENST00000380324 FOSBP53539 338 aa14.18□□□□□ -0.14
USP3-202ENST00000380324 FAM173BQ6P4H8 233 aa14.18□□□□□ -0.14
USP3-202ENST00000380324 NLRP3Q96P20 1036 aa14.18□□□□□ -0.14
USP3-202ENST00000380324 AGXT2Q9BYV1 514 aa14.18□□□□□ -0.14
USP3-202ENST00000380324 NBPF3Q9H094 633 aa14.18□□□□□ -0.14
USP3-202ENST00000380324 LRP2BPQ9P2M1 347 aa14.18□□□□□ -0.14
USP3-202ENST00000380324 DENND2AQ9ULE3 1009 aa14.18□□□□□ -0.14
USP3-202ENST00000380324 MINPP1Q9UNW1 487 aa14.18□□□□□ -0.14
USP3-202ENST00000380324 COL1A1P02452 1464 aaPredicted RBP14.17□□□□□ -0.14
USP3-202ENST00000380324 BRWD3Q6RI45 1802 aa14.17□□□□□ -0.14
USP3-202ENST00000380324 PRC1O43663 620 aa14.17□□□□□ -0.14
USP3-202ENST00000380324 PFKFB2O60825 505 aa14.17□□□□□ -0.14
USP3-202ENST00000380324 TBC1D10CQ8IV04 446 aa14.17□□□□□ -0.14
USP3-202ENST00000380324 TMEM87AQ8NBN3 555 aa14.17□□□□□ -0.14
USP3-202ENST00000380324 NCOA7Q8NI08 942 aa14.17□□□□□ -0.14
USP3-202ENST00000380324 ARMT1Q9H993 441 aa14.17□□□□□ -0.14
USP3-202ENST00000380324 LRRC4BQ9NT99 713 aa14.17□□□□□ -0.14
USP3-202ENST00000380324 ABCF2Q9UG63 623 aa14.17□□□□□ -0.14
USP3-202ENST00000380324 RGL2O15211 777 aa14.16□□□□□ -0.14
USP3-202ENST00000380324 ZNF445P59923 1031 aa14.16□□□□□ -0.14
USP3-202ENST00000380324 TPTE2Q6XPS3 522 aa14.16□□□□□ -0.14
USP3-202ENST00000380324 VPS37DQ86XT2 251 aa14.16□□□□□ -0.14
USP3-202ENST00000380324 MB21D2Q8IYB1 491 aaPredicted RBP14.16□□□□□ -0.14
USP3-202ENST00000380324 MIGA1Q8NAN2 632 aa14.16□□□□□ -0.14
USP3-202ENST00000380324 FAM184AQ8NB25 1140 aa14.16□□□□□ -0.14
USP3-202ENST00000380324 STRBPQ96SI9 672 aaKnown RBP14.16□□□□□ -0.14
USP3-202ENST00000380324 PTPDC1A2A3K4 754 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 145.6 ms