RNA–Protein interactions for RNA: ENST00000370576.8

MCF2-203, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MCF2, Length 3,688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-203ENST00000370576 WWC3Q9ULE0 1092 aa4.84□□□□□ -1.63
MCF2-203ENST00000370576 PPP2R3BQ9Y5P8 575 aa4.84□□□□□ -1.63
MCF2-203ENST00000370576 FANCIQ9NVI1 1328 aa4.84□□□□□ -1.63
MCF2-203ENST00000370576 P4HBP07237 508 aaKnown RBP4.84□□□□□ -1.63
MCF2-203ENST00000370576 RACK1P63244 317 aaKnown RBP4.84□□□□□ -1.63
MCF2-203ENST00000370576 MORC3Q14149 939 aa4.84□□□□□ -1.63
MCF2-203ENST00000370576 DCAF8Q5TAQ9 597 aa4.84□□□□□ -1.63
MCF2-203ENST00000370576 IQCEQ6IPM2 695 aa4.84□□□□□ -1.63
MCF2-203ENST00000370576 ERP27Q96DN0 273 aa4.84□□□□□ -1.63
MCF2-203ENST00000370576 NELL2Q99435 816 aa4.84□□□□□ -1.63
MCF2-203ENST00000370576 SRA1Q9HD15 236 aaKnown RBP4.84□□□□□ -1.63
MCF2-203ENST00000370576 CTDP1Q9Y5B0 961 aaPredicted RBP4.84□□□□□ -1.63
MCF2-203ENST00000370576 ANKRD31Q8N7Z5 1873 aa4.84□□□□□ -1.64
MCF2-203ENST00000370576 ATP9BO43861 1147 aa4.84□□□□□ -1.64
MCF2-203ENST00000370576 DIAPH1O60610 1272 aaKnown RBP4.84□□□□□ -1.64
MCF2-203ENST00000370576 MTA2O94776 668 aa4.84□□□□□ -1.64
MCF2-203ENST00000370576 S100BP04271 92 aaPredicted RBP4.84□□□□□ -1.64
MCF2-203ENST00000370576 RARSP54136 660 aaKnown RBP4.84□□□□□ -1.64
MCF2-203ENST00000370576 EXOSC10Q01780 885 aaKnown RBP4.84□□□□□ -1.64
MCF2-203ENST00000370576 WASHC4Q2M389 1173 aa4.84□□□□□ -1.64
MCF2-203ENST00000370576 DRC7Q8IY82 874 aa4.84□□□□□ -1.64
MCF2-203ENST00000370576 FAM126AQ9BYI3 521 aaPredicted RBP4.84□□□□□ -1.64
MCF2-203ENST00000370576 ANAPC4Q9UJX5 808 aa4.84□□□□□ -1.64
MCF2-203ENST00000370576 ECM29Q5VYK3 1845 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 CDKN1CP49918 316 aaPredicted RBP4.83□□□□□ -1.64
MCF2-203ENST00000370576 GOLGA2Q08379 1002 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 HDAC1Q13547 482 aaPredicted RBP4.83□□□□□ -1.64
MCF2-203ENST00000370576 CCDC174Q6PII3 467 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 KIAA1958Q8N8K9 716 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 RNF19AQ9NV58 838 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 PRSS47A8MTI9 375 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 BPNT1O95861 308 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 IBSPP21815 317 aaPredicted RBP4.83□□□□□ -1.64
MCF2-203ENST00000370576 GPSM2P81274 684 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 PTPN12Q05209 780 aaKnown RBP4.83□□□□□ -1.64
MCF2-203ENST00000370576 DSC3Q14574 896 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 ERFEQ4G0M1 354 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 RNF187Q5TA31 235 aaPredicted RBP4.83□□□□□ -1.64
MCF2-203ENST00000370576 MIGA1Q8NAN2 632 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 TMC1Q8TDI8 760 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 POGKQ9P215 609 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 NPHP3Q7Z494 1330 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 DPYSL4O14531 572 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 TBX3O15119 743 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 NPR3P17342 541 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 EIF5P55010 431 aaKnown RBP4.83□□□□□ -1.64
MCF2-203ENST00000370576 INHBEP58166 350 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 PDXDC2PQ6P474 469 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 TCP11L2Q8N4U5 519 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 CREBZFQ9NS37 354 aa4.83□□□□□ -1.64
MCF2-203ENST00000370576 SALL3Q9BXA9 1300 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 HOXC13P31276 330 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 SLC4A3P48751 1232 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 KIAA1614Q5VZ46 1190 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 RGL4Q8IZJ4 473 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 ESF1Q9H501 851 aaKnown RBP4.82□□□□□ -1.64
MCF2-203ENST00000370576 ZRANB1Q9UGI0 708 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 PAPPA2Q9BXP8 1791 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 CC2D1BQ5T0F9 858 aaKnown RBP4.82□□□□□ -1.64
MCF2-203ENST00000370576 KRT26Q7Z3Y9 468 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 METTL3Q86U44 580 aaKnown RBP4.82□□□□□ -1.64
MCF2-203ENST00000370576 IFNL3Q8IZI9 196 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 MRPL50Q8N5N7 158 aaKnown RBP4.82□□□□□ -1.64
MCF2-203ENST00000370576 COG3Q96JB2 828 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 SLC26A8Q96RN1 970 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 CEP89Q96ST8 783 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 CDC5LQ99459 802 aaKnown RBP4.82□□□□□ -1.64
MCF2-203ENST00000370576 DNAJC25Q9H1X3 360 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 NGRNQ9NPE2 291 aaKnown RBP4.82□□□□□ -1.64
MCF2-203ENST00000370576 LZTS1Q9Y250 596 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 COL4A1P02462 1669 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 CLCN1P35523 988 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 DAB2P98082 770 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 OCLNQ16625 522 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 CREBRFQ8IUR6 639 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 PLEKHM2Q8IWE5 1019 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 JMYQ8N9B5 988 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 TRMT2BQ96GJ1 504 aaKnown RBP4.82□□□□□ -1.64
MCF2-203ENST00000370576 PHACTR3Q96KR7 559 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 CFAP53Q96M91 514 aa4.82□□□□□ -1.64
MCF2-203ENST00000370576 SPTLC1O15269 473 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 TSPAN6O43657 245 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 RNASEH2AO75792 299 aaKnown RBP4.81□□□□□ -1.64
MCF2-203ENST00000370576 GTF2F1P35269 517 aaKnown RBP eCLIP4.81□□□□□ -1.64
MCF2-203ENST00000370576 SYCP2LQ5T4T6 812 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 INTS3Q68E01 1043 aaKnown RBP4.81□□□□□ -1.64
MCF2-203ENST00000370576 TMC4Q7Z404 712 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 PLPP6Q8IY26 295 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 CHPFQ8IZ52 775 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 EYA1Q99502 592 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 PPP4R2Q9NY27 417 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 EMILIN1Q9Y6C2 1016 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 RBP3P10745 1247 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 PYGBP11216 843 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 HTR3AP46098 478 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 ZSWIM6Q9HCJ5 1215 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 ABCF2Q9UG63 623 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 NOVA2Q9UNW9 492 aaKnown RBP4.81□□□□□ -1.64
MCF2-203ENST00000370576 NDUFB9Q9Y6M9 179 aa4.81□□□□□ -1.64
MCF2-203ENST00000370576 PRRT4C9JH25 899 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 64.7 ms