RNA–Protein interactions for RNA: ENST00000368020.5

USF1-202, Transcript of upstream transcription factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USF1, Length 1,717 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-202ENST00000368020 FKBP4Q02790 459 aaKnown RBP eCLIP16.59■□□□□ 0.25
USF1-202ENST00000368020 CCDC129Q6ZRS4 1044 aa16.59■□□□□ 0.25
USF1-202ENST00000368020 USP48Q86UV5 1035 aa16.59■□□□□ 0.25
USF1-202ENST00000368020 COL23A1Q86Y22 540 aaPredicted RBP16.59■□□□□ 0.25
USF1-202ENST00000368020 APPBP2Q92624 585 aa16.59■□□□□ 0.25
USF1-202ENST00000368020 GTF3C6Q969F1 213 aa16.59■□□□□ 0.25
USF1-202ENST00000368020 SEC62Q99442 399 aaKnown RBP16.59■□□□□ 0.25
USF1-202ENST00000368020 PANK2Q9BZ23 570 aa16.59■□□□□ 0.25
USF1-202ENST00000368020 PNPLA7Q6ZV29 1317 aa16.59■□□□□ 0.25
USF1-202ENST00000368020 RTL9Q8NET4 1388 aa16.59■□□□□ 0.25
USF1-202ENST00000368020 FGD1P98174 961 aa16.59■□□□□ 0.25
USF1-202ENST00000368020 FBXL16Q8N461 479 aa16.59■□□□□ 0.25
USF1-202ENST00000368020 LARP6Q9BRS8 491 aaKnown RBP16.59■□□□□ 0.25
USF1-202ENST00000368020 PDE8BO95263 885 aa16.58■□□□□ 0.24
USF1-202ENST00000368020 ST3GAL1Q11201 340 aa16.58■□□□□ 0.24
USF1-202ENST00000368020 PUM3Q15397 648 aaKnown RBP16.58■□□□□ 0.24
USF1-202ENST00000368020 NLGN1Q8N2Q7 840 aa16.58■□□□□ 0.24
USF1-202ENST00000368020 SETDB2Q96T68 719 aa16.58■□□□□ 0.24
USF1-202ENST00000368020 UTP14AQ9BVJ6 771 aaKnown RBP16.58■□□□□ 0.24
USF1-202ENST00000368020 TMEM63CQ9P1W3 806 aa16.58■□□□□ 0.24
USF1-202ENST00000368020 IMMTQ16891 758 aaKnown RBP16.57■□□□□ 0.24
USF1-202ENST00000368020 TBC1D9BQ66K14 1250 aa16.57■□□□□ 0.24
USF1-202ENST00000368020 Q6ZUG5 572 aa16.57■□□□□ 0.24
USF1-202ENST00000368020 VGLL2Q8N8G2 317 aa16.57■□□□□ 0.24
USF1-202ENST00000368020 NECAB1Q8N987 351 aa16.57■□□□□ 0.24
USF1-202ENST00000368020 TRIM44Q96DX7 344 aaPredicted RBP16.57■□□□□ 0.24
USF1-202ENST00000368020 AGXT2Q9BYV1 514 aa16.57■□□□□ 0.24
USF1-202ENST00000368020 DDX60Q8IY21 1712 aaKnown RBP16.57■□□□□ 0.24
USF1-202ENST00000368020 VPS37CA5D8V6 355 aaPredicted RBP16.56■□□□□ 0.24
USF1-202ENST00000368020 ADORA1P30542 326 aa16.56■□□□□ 0.24
USF1-202ENST00000368020 KRT85P78386 507 aa16.56■□□□□ 0.24
USF1-202ENST00000368020 HMGN5P82970 282 aaKnown RBP16.56■□□□□ 0.24
USF1-202ENST00000368020 SUSD4Q5VX71 490 aa16.56■□□□□ 0.24
USF1-202ENST00000368020 LPIN2Q92539 896 aa16.56■□□□□ 0.24
USF1-202ENST00000368020 ELP1O95163 1332 aa16.56■□□□□ 0.24
USF1-202ENST00000368020 ARID4AP29374 1257 aaPredicted RBP16.56■□□□□ 0.24
USF1-202ENST00000368020 WASHC4Q2M389 1173 aa16.56■□□□□ 0.24
USF1-202ENST00000368020 CCDC152Q4G0S7 254 aa16.56■□□□□ 0.24
USF1-202ENST00000368020 CCDC183Q5T5S1 534 aa16.56■□□□□ 0.24
USF1-202ENST00000368020 NYXQ9GZU5 481 aa16.56■□□□□ 0.24
USF1-202ENST00000368020 COL24A1Q17RW2 1714 aa16.55■□□□□ 0.24
USF1-202ENST00000368020 CARMIL3Q8ND23 1372 aa16.55■□□□□ 0.24
USF1-202ENST00000368020 WDR19Q8NEZ3 1342 aa16.55■□□□□ 0.24
USF1-202ENST00000368020 PFKFB2O60825 505 aa16.55■□□□□ 0.24
USF1-202ENST00000368020 NTSR2O95665 410 aa16.55■□□□□ 0.24
USF1-202ENST00000368020 SLC5A1P13866 664 aa16.55■□□□□ 0.24
USF1-202ENST00000368020 TM4SF1P30408 202 aa16.55■□□□□ 0.24
USF1-202ENST00000368020 EXOSC10Q01780 885 aaKnown RBP16.55■□□□□ 0.24
USF1-202ENST00000368020 NFIXQ14938 502 aa16.55■□□□□ 0.24
USF1-202ENST00000368020 FAM184AQ8NB25 1140 aa16.55■□□□□ 0.24
USF1-202ENST00000368020 CCDC85AQ96PX6 553 aaPredicted RBP16.55■□□□□ 0.24
USF1-202ENST00000368020 PPP1R9BQ96SB3 815 aa16.55■□□□□ 0.24
USF1-202ENST00000368020 SCAND2PQ9GZW5 306 aaPredicted RBP16.55■□□□□ 0.24
USF1-202ENST00000368020 CNPY2Q9Y2B0 182 aa16.55■□□□□ 0.24
USF1-202ENST00000368020 TAF6LQ9Y6J9 622 aa16.55■□□□□ 0.24
USF1-202ENST00000368020 DOCK2Q92608 1830 aa16.54■□□□□ 0.24
USF1-202ENST00000368020 E7EWF7 191 aa16.54■□□□□ 0.24
USF1-202ENST00000368020 ZAP70P43403 619 aa16.54■□□□□ 0.24
USF1-202ENST00000368020 UBE3CQ15386 1083 aa16.54■□□□□ 0.24
USF1-202ENST00000368020 TPTE2Q6XPS3 522 aa16.54■□□□□ 0.24
USF1-202ENST00000368020 OSBP2Q969R2 916 aa16.54■□□□□ 0.24
USF1-202ENST00000368020 ZNF274Q96GC6 653 aaPredicted RBP16.54■□□□□ 0.24
USF1-202ENST00000368020 RBM27Q9P2N5 1060 aaKnown RBP16.54■□□□□ 0.24
USF1-202ENST00000368020 SYCE3A1L190 88 aa16.53■□□□□ 0.24
USF1-202ENST00000368020 M0R2C6 588 aa16.53■□□□□ 0.24
USF1-202ENST00000368020 SLC16A10Q8TF71 515 aa16.53■□□□□ 0.24
USF1-202ENST00000368020 TCEANC2Q96MN5 208 aa16.53■□□□□ 0.24
USF1-202ENST00000368020 MPHOSPH8Q99549 860 aa16.53■□□□□ 0.24
USF1-202ENST00000368020 ZSCAN16Q9H4T2 348 aaPredicted RBP16.53■□□□□ 0.24
USF1-202ENST00000368020 BICDL1Q6ZP65 573 aa16.53■□□□□ 0.24
USF1-202ENST00000368020 SYNE4Q8N205 404 aa16.53■□□□□ 0.24
USF1-202ENST00000368020 BRF1Q92994 677 aa16.53■□□□□ 0.24
USF1-202ENST00000368020 TSPY26PQ9H489 355 aa16.53■□□□□ 0.24
USF1-202ENST00000368020 MYH15Q9Y2K3 1946 aa16.52■□□□□ 0.24
USF1-202ENST00000368020 FIBPO43427 364 aa16.52■□□□□ 0.24
USF1-202ENST00000368020 FGFR2P21802 821 aa16.52■□□□□ 0.24
USF1-202ENST00000368020 ADD2P35612 726 aa16.52■□□□□ 0.24
USF1-202ENST00000368020 IGHMBP2P38935 993 aaKnown RBP16.52■□□□□ 0.24
USF1-202ENST00000368020 MCAMP43121 646 aa16.52■□□□□ 0.24
USF1-202ENST00000368020 SLC10A5Q5PT55 438 aa16.52■□□□□ 0.24
USF1-202ENST00000368020 STOX1Q6ZVD7 989 aa16.52■□□□□ 0.24
USF1-202ENST00000368020 NBPF5PQ86XG9 351 aaPredicted RBP16.52■□□□□ 0.24
USF1-202ENST00000368020 SMARCC2Q8TAQ2 1214 aa16.52■□□□□ 0.24
USF1-202ENST00000368020 CHAMP1Q96JM3 812 aa16.52■□□□□ 0.24
USF1-202ENST00000368020 ZMYM6O95789 1325 aa16.52■□□□□ 0.23
USF1-202ENST00000368020 DHX16O60231 1041 aaKnown RBP16.51■□□□□ 0.23
USF1-202ENST00000368020 EVCP57679 992 aa16.51■□□□□ 0.23
USF1-202ENST00000368020 DNM1Q05193 864 aaKnown RBP16.51■□□□□ 0.23
USF1-202ENST00000368020 FOXD4L6Q3SYB3 417 aaPredicted RBP16.51■□□□□ 0.23
USF1-202ENST00000368020 HS1BP3Q53T59 392 aa16.51■□□□□ 0.23
USF1-202ENST00000368020 CCDC102BQ68D86 513 aa16.51■□□□□ 0.23
USF1-202ENST00000368020 FOXD4L3Q6VB84 417 aaPredicted RBP16.51■□□□□ 0.23
USF1-202ENST00000368020 GDPD2Q9HCC8 539 aa16.51■□□□□ 0.23
USF1-202ENST00000368020 NSFL1CQ9UNZ2 370 aaKnown RBP16.51■□□□□ 0.23
USF1-202ENST00000368020 GPAA1O43292 621 aa16.5■□□□□ 0.23
USF1-202ENST00000368020 GADD45BO75293 160 aaPredicted RBP16.5■□□□□ 0.23
USF1-202ENST00000368020 CHGBP05060 677 aa16.5■□□□□ 0.23
USF1-202ENST00000368020 STK3Q13188 491 aa16.5■□□□□ 0.23
USF1-202ENST00000368020 SCARF1Q14162 830 aa16.5■□□□□ 0.23
USF1-202ENST00000368020 ATL3Q6DD88 541 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms