RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 FRAT2O75474 233 aaPredicted RBP22.45■■□□□ 1.18
CLN3-204ENST00000357857 MAP3K12Q12852 859 aa22.45■■□□□ 1.18
CLN3-204ENST00000357857 BECN1Q14457 450 aa22.45■■□□□ 1.18
CLN3-204ENST00000357857 RABEP1Q15276 862 aa22.45■■□□□ 1.18
CLN3-204ENST00000357857 WASHC4Q2M389 1173 aa22.45■■□□□ 1.18
CLN3-204ENST00000357857 SLC9C2Q5TAH2 1124 aa22.45■■□□□ 1.18
CLN3-204ENST00000357857 TBC1D16Q8TBP0 767 aa22.45■■□□□ 1.18
CLN3-204ENST00000357857 TMX4Q9H1E5 349 aaPredicted RBP22.45■■□□□ 1.18
CLN3-204ENST00000357857 MAST3O60307 1309 aa22.45■■□□□ 1.18
CLN3-204ENST00000357857 PDS5AQ29RF7 1337 aaKnown RBP22.45■■□□□ 1.18
CLN3-204ENST00000357857 ZBTB7AO95365 584 aa22.44■■□□□ 1.18
CLN3-204ENST00000357857 ZNF804AQ7Z570 1209 aa22.44■■□□□ 1.18
CLN3-204ENST00000357857 MAP4K1Q92918 833 aa22.44■■□□□ 1.18
CLN3-204ENST00000357857 CNKSR1Q969H4 720 aa22.44■■□□□ 1.18
CLN3-204ENST00000357857 OSBP2Q969R2 916 aa22.44■■□□□ 1.18
CLN3-204ENST00000357857 PALD1Q9ULE6 856 aa22.44■■□□□ 1.18
CLN3-204ENST00000357857 M0R2C6 588 aa22.43■■□□□ 1.18
CLN3-204ENST00000357857 PDE6AP16499 860 aa22.43■■□□□ 1.18
CLN3-204ENST00000357857 R3HDM1Q15032 1099 aaKnown RBP22.43■■□□□ 1.18
CLN3-204ENST00000357857 UBE3CQ15386 1083 aa22.43■■□□□ 1.18
CLN3-204ENST00000357857 GPR101Q96P66 508 aaPredicted RBP22.43■■□□□ 1.18
CLN3-204ENST00000357857 MTFR1LQ9H019 292 aa22.43■■□□□ 1.18
CLN3-204ENST00000357857 POLLQ9UGP5 575 aa22.43■■□□□ 1.18
CLN3-204ENST00000357857 WWC3Q9ULE0 1092 aa22.43■■□□□ 1.18
CLN3-204ENST00000357857 RBM8AQ9Y5S9 174 aaKnown RBP22.43■■□□□ 1.18
CLN3-204ENST00000357857 DAXXQ9UER7 740 aaPredicted RBP22.43■■□□□ 1.18
CLN3-204ENST00000357857 C6orf229H3BNL8 230 aa22.42■■□□□ 1.18
CLN3-204ENST00000357857 PRPF40BQ6NWY9 871 aaKnown RBP22.42■■□□□ 1.18
CLN3-204ENST00000357857 MPNDQ8N594 471 aa22.42■■□□□ 1.18
CLN3-204ENST00000357857 IL17RAQ96F46 866 aa22.42■■□□□ 1.18
CLN3-204ENST00000357857 LRP2BPQ9P2M1 347 aa22.42■■□□□ 1.18
CLN3-204ENST00000357857 DUOX1Q9NRD9 1551 aa22.41■■□□□ 1.18
CLN3-204ENST00000357857 ZNF532Q9HCE3 1301 aa22.41■■□□□ 1.18
CLN3-204ENST00000357857 CCDC88AQ3V6T2 1871 aa22.41■■□□□ 1.18
CLN3-204ENST00000357857 TCRBV5S4A2TA0A5A2 114 aa22.4■■□□□ 1.18
CLN3-204ENST00000357857 POLD1P28340 1107 aa22.4■■□□□ 1.18
CLN3-204ENST00000357857 NECTIN1Q15223 517 aa22.4■■□□□ 1.18
CLN3-204ENST00000357857 OLFM4Q6UX06 510 aa22.4■■□□□ 1.18
CLN3-204ENST00000357857 MAGEB6Q8N7X4 407 aa22.4■■□□□ 1.18
CLN3-204ENST00000357857 TDRD7Q8NHU6 1098 aaKnown RBP22.4■■□□□ 1.18
CLN3-204ENST00000357857 PUS7LQ9H0K6 701 aaKnown RBP22.4■■□□□ 1.18
CLN3-204ENST00000357857 ABCF2Q9UG63 623 aa22.4■■□□□ 1.18
CLN3-204ENST00000357857 ATF5Q9Y2D1 282 aaPredicted RBP22.4■■□□□ 1.18
CLN3-204ENST00000357857 DPP8Q6V1X1 898 aaPredicted RBP22.4■■□□□ 1.18
CLN3-204ENST00000357857 SNX21Q969T3 373 aa22.4■■□□□ 1.18
CLN3-204ENST00000357857 TBC1D2Q9BYX2 928 aa22.4■■□□□ 1.18
CLN3-204ENST00000357857 CHAF1AQ13111 956 aaPredicted RBP22.39■■□□□ 1.17
CLN3-204ENST00000357857 KCNB2Q92953 911 aa22.39■■□□□ 1.17
CLN3-204ENST00000357857 DSCC1Q9BVC3 393 aa22.39■■□□□ 1.17
CLN3-204ENST00000357857 SNX14Q9Y5W7 946 aa22.39■■□□□ 1.17
CLN3-204ENST00000357857 U3KPZ7 1027 aaPredicted RBP22.39■■□□□ 1.17
CLN3-204ENST00000357857 MAST2Q6P0Q8 1798 aa22.38■■□□□ 1.17
CLN3-204ENST00000357857 CREB3L3Q68CJ9 461 aa22.38■■□□□ 1.17
CLN3-204ENST00000357857 SLC4A3P48751 1232 aa22.37■■□□□ 1.17
CLN3-204ENST00000357857 HSCBQ8IWL3 235 aa22.37■■□□□ 1.17
CLN3-204ENST00000357857 RASEFQ8IZ41 740 aa22.37■■□□□ 1.17
CLN3-204ENST00000357857 CD209Q9NNX6 404 aa22.37■■□□□ 1.17
CLN3-204ENST00000357857 RAI14Q9P0K7 980 aa22.37■■□□□ 1.17
CLN3-204ENST00000357857 GPAA1O43292 621 aa22.37■■□□□ 1.17
CLN3-204ENST00000357857 HSPD1P10809 573 aaKnown RBP22.37■■□□□ 1.17
CLN3-204ENST00000357857 VPS53Q5VIR6 699 aa22.37■■□□□ 1.17
CLN3-204ENST00000357857 RNF20Q5VTR2 975 aa22.37■■□□□ 1.17
CLN3-204ENST00000357857 SLC27A2O14975 620 aa22.36■■□□□ 1.17
CLN3-204ENST00000357857 IL1R1P14778 569 aa22.36■■□□□ 1.17
CLN3-204ENST00000357857 ZKSCAN1P17029 563 aaPredicted RBP22.36■■□□□ 1.17
CLN3-204ENST00000357857 ERICH6Q7L0X2 663 aa22.36■■□□□ 1.17
CLN3-204ENST00000357857 WDR66Q8TBY9 1149 aa22.36■■□□□ 1.17
CLN3-204ENST00000357857 KIAA1551Q9HCM1 1747 aa22.36■■□□□ 1.17
CLN3-204ENST00000357857 ZGPATQ8N5A5 531 aaKnown RBP22.35■■□□□ 1.17
CLN3-204ENST00000357857 SALL1Q9NSC2 1324 aa22.35■■□□□ 1.17
CLN3-204ENST00000357857 DPEP1P16444 411 aa22.34■■□□□ 1.17
CLN3-204ENST00000357857 C7orf43Q8WVR3 580 aa22.34■■□□□ 1.17
CLN3-204ENST00000357857 EYA3Q99504 573 aa22.34■■□□□ 1.17
CLN3-204ENST00000357857 ZC3H12CQ9C0D7 883 aaKnown RBP22.34■■□□□ 1.17
CLN3-204ENST00000357857 ZNF219Q9P2Y4 722 aaPredicted RBP22.34■■□□□ 1.17
CLN3-204ENST00000357857 CHD4Q14839 1912 aa22.34■■□□□ 1.17
CLN3-204ENST00000357857 PSDA5PKW4 1024 aaPredicted RBP22.34■■□□□ 1.17
CLN3-204ENST00000357857 RIMBP2O15034 1052 aa22.34■■□□□ 1.17
CLN3-204ENST00000357857 ST18O60284 1047 aa22.34■■□□□ 1.17
CLN3-204ENST00000357857 CYP7A1P22680 504 aa22.34■■□□□ 1.17
CLN3-204ENST00000357857 SPTY2D1Q68D10 685 aaPredicted RBP22.34■■□□□ 1.17
CLN3-204ENST00000357857 CC2D2BQ6DHV5 1058 aa22.34■■□□□ 1.17
CLN3-204ENST00000357857 TTLL6Q8N841 843 aa22.34■■□□□ 1.17
CLN3-204ENST00000357857 AIDAQ96BJ3 306 aa22.34■■□□□ 1.17
CLN3-204ENST00000357857 JAG2Q9Y219 1238 aa22.34■■□□□ 1.17
CLN3-204ENST00000357857 A0A0G2JLW4 131 aa22.33■■□□□ 1.17
CLN3-204ENST00000357857 CD2BP2O95400 341 aaKnown RBP22.33■■□□□ 1.17
CLN3-204ENST00000357857 COA1Q9GZY4 146 aa22.33■■□□□ 1.17
CLN3-204ENST00000357857 KCNA3P22001 575 aa22.32■■□□□ 1.16
CLN3-204ENST00000357857 NEK4P51957 841 aa22.32■■□□□ 1.16
CLN3-204ENST00000357857 TGFB2P61812 414 aa22.32■■□□□ 1.16
CLN3-204ENST00000357857 NAA16Q6N069 864 aaPredicted RBP22.32■■□□□ 1.16
CLN3-204ENST00000357857 IGSF3O75054 1194 aa22.31■■□□□ 1.16
CLN3-204ENST00000357857 MBD4O95243 580 aa22.31■■□□□ 1.16
CLN3-204ENST00000357857 IL27Q8NEV9 243 aa22.31■■□□□ 1.16
CLN3-204ENST00000357857 STRBPQ96SI9 672 aaKnown RBP22.31■■□□□ 1.16
CLN3-204ENST00000357857 FOXP2O15409 715 aa22.31■■□□□ 1.16
CLN3-204ENST00000357857 PRDX5P30044 214 aa22.31■■□□□ 1.16
CLN3-204ENST00000357857 TSGA10IPQ3SY00 556 aa22.31■■□□□ 1.16
CLN3-204ENST00000357857 TMED8Q6PL24 325 aaPredicted RBP22.31■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms